Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00363 * 2 1 4 4 O 1.20833 * 119.99162 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00426 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47077 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47049 * 179.97438 * 6 5 3 8 8 C 1.36937 * 119.99931 * 263.28482 * 7 6 5 9 9 H 1.07995 * 119.99406 * 187.76004 * 8 7 6 10 10 C 1.38806 * 120.00135 * 7.76041 * 8 7 6 11 11 N 1.31616 * 120.00311 * 26.62896 * 10 8 7 12 12 Si 1.86801 * 119.99820 * 206.63024 * 10 8 7 13 13 H 1.48501 * 109.47078 * 84.98576 * 12 10 8 14 14 H 1.48500 * 109.47229 * 204.98637 * 12 10 8 15 15 H 1.48501 * 109.47001 * 324.98954 * 12 10 8 16 16 C 1.46500 * 119.99396 * 83.27969 * 7 6 5 17 17 H 1.08992 * 109.47588 * 0.02562 * 16 7 6 18 18 C 1.53002 * 109.47397 * 239.99724 * 16 7 6 19 19 C 1.50710 * 109.46660 * 120.00361 * 16 7 6 20 20 O 1.21284 * 119.99955 * 359.97438 * 19 16 7 21 21 N 1.34774 * 120.00070 * 179.97438 * 19 16 7 22 22 C 1.46497 * 120.00148 * 179.97438 * 21 19 16 23 23 C 1.53004 * 109.47030 * 179.97438 * 22 21 19 24 24 C 1.52992 * 109.47235 * 295.00303 * 23 22 21 25 25 C 1.53004 * 109.47235 * 179.97438 * 24 23 22 26 26 C 1.53009 * 109.46842 * 59.99491 * 25 24 23 27 27 C 1.52991 * 109.47255 * 300.00333 * 26 25 24 28 28 C 1.52999 * 109.46756 * 174.99757 * 23 22 21 29 29 H 1.08993 * 109.47244 * 299.99657 * 1 2 3 30 30 H 1.09009 * 109.47005 * 59.99910 * 1 2 3 31 31 H 1.08997 * 109.47073 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47200 * 60.00154 * 5 3 2 33 33 H 1.09001 * 109.46818 * 300.00301 * 5 3 2 34 34 H 1.09004 * 109.47288 * 60.00313 * 6 5 3 35 35 H 1.08997 * 109.46774 * 299.99917 * 6 5 3 36 36 H 0.97001 * 120.00393 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47329 * 300.00907 * 18 16 7 38 38 H 1.09004 * 109.46802 * 60.00545 * 18 16 7 39 39 H 1.08994 * 109.47460 * 180.02562 * 18 16 7 40 40 H 0.97002 * 119.99756 * 359.97438 * 21 19 16 41 41 H 1.09001 * 109.46845 * 60.00140 * 22 21 19 42 42 H 1.08997 * 109.47160 * 300.00191 * 22 21 19 43 43 H 1.09004 * 109.47016 * 55.00378 * 23 22 21 44 44 H 1.09004 * 109.47180 * 299.99974 * 24 23 22 45 45 H 1.08998 * 109.47459 * 59.99944 * 24 23 22 46 46 H 1.09004 * 109.47016 * 300.00075 * 25 24 23 47 47 H 1.08993 * 109.47594 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.46800 * 179.97438 * 26 25 24 49 49 H 1.09004 * 109.46838 * 60.00475 * 26 25 24 50 50 H 1.09004 * 109.47313 * 299.99851 * 27 26 25 51 51 H 1.08998 * 109.47093 * 180.02562 * 27 26 25 52 52 H 1.08998 * 109.47479 * 300.00187 * 28 23 22 53 53 H 1.09004 * 109.46851 * 60.00520 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4632 2.8188 0.0023 8 6 6.1387 2.9930 1.1806 9 1 7.2032 3.1749 1.1709 10 6 5.4553 2.9357 2.3874 11 7 4.3474 2.2318 2.4837 12 14 6.1081 3.8580 3.8750 13 1 5.6312 5.2637 3.8344 14 1 5.6191 3.2051 5.1160 15 1 7.5928 3.8383 3.8573 16 6 6.2033 2.7090 -1.2572 17 1 5.5017 2.5757 -2.0806 18 6 7.1472 1.5066 -1.1910 19 6 7.0053 3.9654 -1.4797 20 8 6.9624 4.8642 -0.6664 21 7 7.7702 4.0903 -2.5823 22 6 8.5493 5.3119 -2.7988 23 6 9.3235 5.1967 -4.1135 24 6 10.3555 4.0729 -4.0009 25 6 11.1292 3.9573 -5.3158 26 6 11.8437 5.2791 -5.6050 27 6 10.8116 6.4028 -5.7176 28 6 10.0380 6.5185 -4.4020 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6107 3.2363 -0.8889 36 1 3.8700 2.1915 3.3271 37 1 7.8488 1.6403 -0.3677 38 1 6.5672 0.5979 -1.0301 39 1 7.6982 1.4252 -2.1279 40 1 7.8048 3.3713 -3.2325 41 1 9.2506 5.4462 -1.9752 42 1 7.8767 6.1682 -2.8466 43 1 8.6305 4.9737 -4.9248 44 1 11.0485 4.2960 -3.1896 45 1 9.8465 3.1313 -3.7954 46 1 10.4360 3.7341 -6.1269 47 1 11.8642 3.1565 -5.2358 48 1 12.3953 5.1966 -6.5415 49 1 12.5370 5.5023 -4.7940 50 1 10.1184 6.1796 -6.5286 51 1 11.3206 7.3443 -5.9240 52 1 9.3027 7.3191 -4.4822 53 1 10.7309 6.7415 -3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475552.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -139.074017 kcal Electronic energy + Delta-G solvation = -30898.749174 eV Core-core repulsion = 26769.756213 eV Total energy + Delta-G solvation = -4128.992961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27822 -40.81199 -39.47283 -37.87767 -37.14698 -35.62276 -34.00042 -32.79373 -32.02346 -31.53773 -30.22751 -28.47942 -26.87574 -26.39883 -24.78602 -23.56394 -23.06843 -22.03351 -21.42175 -21.07999 -20.47727 -19.08001 -18.29289 -17.50758 -17.29914 -17.22377 -17.09835 -16.50315 -16.35840 -15.91428 -15.53191 -15.40800 -14.95481 -14.89367 -14.78792 -14.60697 -14.43897 -14.23035 -13.68928 -13.52322 -13.39849 -13.22481 -13.06778 -13.01933 -12.92289 -12.82186 -12.77559 -12.64001 -12.56071 -12.34983 -11.96640 -11.93394 -11.87790 -11.77189 -11.69100 -11.44774 -11.30955 -11.28778 -11.02555 -10.89435 -10.50267 -10.33624 -9.88165 -8.90514 -7.85576 -5.06704 1.41657 1.42886 1.49552 1.54280 1.95656 1.99514 2.39241 2.57584 3.33230 3.56432 3.71121 3.82588 3.88100 4.14031 4.23287 4.25730 4.37063 4.37962 4.38658 4.39559 4.42424 4.50190 4.53170 4.58795 4.61166 4.67778 4.72616 4.74951 4.82422 4.83555 4.86362 4.93286 4.99091 5.06911 5.16029 5.21478 5.30670 5.31393 5.33414 5.42809 5.44598 5.48799 5.55012 5.61247 5.62620 5.70579 5.73329 5.89332 6.31325 6.80307 6.96947 7.20230 7.58529 7.89391 8.24943 9.19800 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002727 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.367229 B =10266.255337 C =11732.603631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.475 3.525 4 O -0.551 6.551 5 C -0.103 4.103 6 C 0.190 3.810 7 N -0.583 5.583 8 C -0.208 4.208 9 H 0.058 0.942 10 C -0.046 4.046 11 N -0.913 5.913 12 Si 0.934 3.066 13 H -0.307 1.307 14 H -0.293 1.293 15 H -0.281 1.281 16 C 0.147 3.853 17 H 0.108 0.892 18 C -0.137 4.137 19 C 0.488 3.512 20 O -0.571 6.571 21 N -0.720 5.720 22 C 0.126 3.874 23 C -0.084 4.084 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.114 4.114 28 C -0.114 4.114 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.245 0.755 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.411 0.589 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.066 0.934 52 H 0.062 0.938 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.216 -2.930 -19.948 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.320 3.680 4 O -0.441 6.441 5 C -0.142 4.142 6 C 0.064 3.936 7 N -0.302 5.302 8 C -0.338 4.338 9 H 0.076 0.924 10 C -0.240 4.240 11 N -0.562 5.562 12 Si 0.765 3.235 13 H -0.236 1.236 14 H -0.219 1.219 15 H -0.207 1.207 16 C 0.036 3.964 17 H 0.126 0.874 18 C -0.196 4.196 19 C 0.273 3.727 20 O -0.448 6.448 21 N -0.375 5.375 22 C 0.002 3.998 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.081 0.919 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.879 -2.018 -19.203 20.854 hybrid contribution -0.085 0.752 1.361 1.557 sum 7.794 -1.266 -17.842 19.511 Atomic orbital electron populations 1.23468 0.75688 1.05390 1.02000 1.86532 1.24543 1.33442 1.84143 1.24419 0.92867 0.80692 0.69980 1.90565 1.68198 1.37590 1.47783 1.22061 0.84594 1.02317 1.05247 1.20385 0.81982 0.92485 0.98720 1.43988 1.01423 1.82881 1.01913 1.19002 0.92549 1.38235 0.84018 0.92395 1.24983 0.98675 1.01548 0.98779 1.70089 1.20603 1.40570 1.24897 0.85767 0.77720 0.79070 0.80894 1.23607 1.21929 1.20700 1.20617 0.94329 0.91592 0.89832 0.87412 1.22033 0.98894 0.96917 1.01800 1.22447 0.79568 0.90124 0.80516 1.90678 1.65060 1.43343 1.45691 1.46039 1.47204 1.20368 1.23932 1.21309 0.93643 0.87114 0.97718 1.21315 0.96926 0.96781 0.95264 1.21601 0.97427 0.98042 0.98166 1.21518 0.99333 0.97501 0.96968 1.21562 0.97769 0.94855 1.01699 1.21504 0.97979 0.98951 0.96738 1.21528 0.99177 0.96091 0.98386 0.93157 0.91891 0.84847 0.88252 0.86607 0.92248 0.96134 0.94540 0.94609 0.91510 0.89378 0.75133 0.94047 0.93603 0.89353 0.93005 0.91358 0.91153 0.91553 0.91186 0.92643 0.91345 0.91497 0.91883 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.37 -12.80 10.57 -51.45 -0.54 -13.34 16 3 C 0.47 19.51 7.96 71.23 0.57 20.08 16 4 O -0.55 -25.57 15.73 21.94 0.35 -25.22 16 5 C -0.10 -4.28 5.66 29.85 0.17 -4.11 16 6 C 0.19 9.16 4.10 86.38 0.35 9.52 16 7 N -0.58 -27.81 2.28 -682.19 -1.55 -29.36 16 8 C -0.21 -11.41 7.56 84.03 0.64 -10.78 16 9 H 0.06 3.33 7.21 -2.91 -0.02 3.30 16 10 C -0.05 -2.59 4.86 84.86 0.41 -2.18 16 11 N -0.91 -51.72 8.75 21.65 0.19 -51.53 16 12 Si 0.93 48.21 29.63 68.60 2.03 50.24 16 13 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 14 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 15 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 16 C 0.15 5.34 3.17 44.25 0.14 5.48 16 17 H 0.11 3.26 7.88 -2.39 -0.02 3.25 16 18 C -0.14 -4.11 9.06 71.98 0.65 -3.46 16 19 C 0.49 18.55 6.96 87.66 0.61 19.16 16 20 O -0.57 -28.61 15.06 -3.04 -0.05 -28.65 16 21 N -0.72 -19.03 5.18 -463.05 -2.40 -21.42 16 22 C 0.13 3.18 5.06 86.38 0.44 3.62 16 23 C -0.08 -1.40 2.22 -10.79 -0.02 -1.42 16 24 C -0.11 -1.74 5.08 30.59 0.16 -1.59 16 25 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 26 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 27 C -0.11 -1.39 5.92 30.61 0.18 -1.21 16 28 C -0.11 -1.77 5.21 30.61 0.16 -1.61 16 29 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.12 5.53 6.42 -2.39 -0.02 5.52 16 34 H 0.06 3.43 5.76 -2.38 -0.01 3.41 16 35 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16 36 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 37 H 0.03 1.27 7.43 -2.39 -0.02 1.25 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.09 1.79 7.56 -2.39 -0.02 1.77 16 40 H 0.41 7.68 7.07 -92.71 -0.66 7.02 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.98 7.18 -2.39 -0.02 0.97 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -74.16 414.99 4.26 -69.90 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.22 Total: 18.42 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 6.01 Total: 30.97 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.76 Total: -102.31 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -0.24 Total: -67.22 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -74.16 4.26 -69.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475552.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.174 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds