Wall clock time and date at job start Sat Apr 11 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47111 * 2 1 4 4 C 1.34775 * 119.99461 * 269.99373 * 3 2 1 5 5 O 1.21290 * 119.99408 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.00510 * 0.02562 * 4 3 2 7 7 N 1.46497 * 109.47019 * 179.97438 * 6 4 3 8 8 C 1.36937 * 120.00288 * 90.00093 * 7 6 4 9 9 H 1.07991 * 120.00144 * 7.75812 * 8 7 6 10 10 C 1.38819 * 119.99869 * 187.77109 * 8 7 6 11 11 N 1.31620 * 120.00100 * 25.65938 * 10 8 7 12 12 Si 1.86799 * 119.99698 * 205.66783 * 10 8 7 13 13 H 1.48500 * 109.47034 * 84.98128 * 12 10 8 14 14 H 1.48500 * 109.47256 * 204.98303 * 12 10 8 15 15 H 1.48502 * 109.47206 * 324.98203 * 12 10 8 16 16 C 1.46507 * 119.99551 * 269.99119 * 7 6 4 17 17 C 1.53003 * 109.46604 * 84.02097 * 16 7 6 18 18 C 1.50700 * 109.46917 * 179.97438 * 17 16 7 19 19 O 1.20825 * 120.00036 * 359.97438 * 18 17 16 20 20 O 1.34230 * 120.00333 * 179.97438 * 18 17 16 21 21 C 1.45198 * 117.00343 * 180.02562 * 20 18 17 22 22 C 1.46493 * 120.00031 * 89.99709 * 3 2 1 23 23 C 1.53004 * 109.47011 * 119.99738 * 22 3 2 24 24 C 1.52998 * 109.47225 * 179.97438 * 23 22 3 25 25 C 1.53003 * 109.47084 * 300.00258 * 24 23 22 26 26 C 1.53004 * 109.47300 * 59.99788 * 25 24 23 27 27 C 1.52995 * 109.47314 * 239.99691 * 22 3 2 28 28 H 1.08998 * 109.46994 * 300.00334 * 1 2 3 29 29 H 1.08997 * 109.46682 * 60.00557 * 1 2 3 30 30 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46994 * 239.99666 * 2 1 3 32 32 H 1.09000 * 109.46496 * 120.00194 * 2 1 3 33 33 H 1.09001 * 109.46801 * 299.99158 * 6 4 3 34 34 H 1.08993 * 109.47443 * 59.99428 * 6 4 3 35 35 H 0.96999 * 119.99971 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.47065 * 204.01414 * 16 7 6 37 37 H 1.08991 * 109.47453 * 324.01997 * 16 7 6 38 38 H 1.08997 * 109.47219 * 299.99466 * 17 16 7 39 39 H 1.09004 * 109.47172 * 59.99987 * 17 16 7 40 40 H 1.09003 * 109.47214 * 300.00060 * 21 20 18 41 41 H 1.08999 * 109.47185 * 59.99992 * 21 20 18 42 42 H 1.08997 * 109.47005 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.47364 * 0.02562 * 22 3 2 44 44 H 1.08994 * 109.47204 * 300.00249 * 23 22 3 45 45 H 1.08998 * 109.46750 * 60.00000 * 23 22 3 46 46 H 1.08993 * 109.47327 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.47154 * 59.99774 * 24 23 22 48 48 H 1.08998 * 109.47141 * 300.00123 * 25 24 23 49 49 H 1.09002 * 109.47648 * 179.97438 * 25 24 23 50 50 H 1.08994 * 109.47204 * 179.97438 * 26 25 24 51 51 H 1.08998 * 109.46750 * 60.00096 * 26 25 24 52 52 H 1.08998 * 109.47250 * 300.00493 * 27 22 3 53 53 H 1.09002 * 109.47061 * 60.00045 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0164 -1.1672 5 8 2.6470 3.1601 -1.1672 6 6 1.9915 1.3061 -2.4723 7 7 2.3085 2.2038 -3.5858 8 6 3.5747 2.2281 -4.1067 9 1 4.3052 1.5010 -3.7843 10 6 3.9193 3.1875 -5.0489 11 7 3.2759 4.3352 -5.0852 12 14 5.2960 2.8496 -6.2654 13 1 4.7553 2.1043 -7.4304 14 1 5.8759 4.1365 -6.7268 15 1 6.3515 2.0394 -5.6060 16 6 1.2706 3.0754 -4.1422 17 6 1.1740 4.3522 -3.3046 18 6 0.1069 5.2491 -3.8772 19 8 -0.5124 4.9029 -4.8552 20 8 -0.1556 6.4325 -3.3008 21 6 -1.1966 7.2440 -3.9058 22 6 2.2625 2.0718 1.2687 23 6 3.7335 2.4847 1.3498 24 6 3.9884 3.2065 2.6745 25 6 3.1038 4.4523 2.7548 26 6 1.6328 4.0395 2.6737 27 6 1.3780 3.3176 1.3497 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.6215 0.4185 -2.5302 34 1 0.9435 1.0123 -2.5300 35 1 3.5165 5.0054 -5.7438 36 1 1.5257 3.3337 -5.1701 37 1 0.3125 2.5563 -4.1251 38 1 0.9190 4.0940 -2.2768 39 1 2.1323 4.8714 -3.3218 40 1 -0.9254 7.4738 -4.9363 41 1 -2.1387 6.6960 -3.8917 42 1 -1.3069 8.1715 -3.3440 43 1 2.0268 1.4039 2.0972 44 1 4.3637 1.5972 1.2921 45 1 3.9696 3.1524 0.5213 46 1 5.0362 3.5010 2.7321 47 1 3.7521 2.5391 3.5032 48 1 3.3400 5.1197 1.9261 49 1 3.2850 4.9664 3.6988 50 1 1.0026 4.9269 2.7314 51 1 1.3965 3.3721 3.5025 52 1 1.6141 3.9853 0.5211 53 1 0.3300 3.0235 1.2919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475795.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:49 Heat of formation + Delta-G solvation = -119.636881 kcal Electronic energy + Delta-G solvation = -32742.478341 eV Core-core repulsion = 28614.328238 eV Total energy + Delta-G solvation = -4128.150103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37694 -41.12822 -38.76103 -37.65059 -37.01628 -36.36111 -33.34388 -32.38907 -31.86851 -31.59478 -29.97049 -28.64665 -28.01815 -25.96486 -24.23679 -23.80362 -23.39500 -22.70539 -21.42385 -20.84069 -19.65880 -18.96378 -18.23365 -17.60016 -17.47461 -17.34487 -17.05049 -16.68162 -16.02762 -15.76754 -15.35976 -15.14214 -14.96774 -14.83532 -14.67763 -14.57739 -14.41010 -14.14367 -13.80769 -13.54744 -13.53370 -13.23113 -13.14004 -13.10412 -13.04133 -12.77644 -12.66264 -12.52812 -12.45935 -12.28482 -12.06113 -11.91567 -11.84493 -11.75830 -11.74659 -11.53511 -11.48992 -11.31035 -11.08959 -11.05451 -10.53144 -10.08933 -9.32516 -8.89294 -7.83062 -5.12824 1.35389 1.49416 1.52217 1.58638 1.98040 2.07503 2.27666 2.56868 3.30678 3.61671 3.74498 3.90817 4.02911 4.13224 4.22372 4.25368 4.31045 4.32556 4.36846 4.41249 4.48333 4.51390 4.52457 4.59512 4.66054 4.66354 4.67809 4.67900 4.70803 4.77185 4.88922 4.91474 4.93011 5.02810 5.10651 5.13484 5.22898 5.27627 5.34651 5.39869 5.42550 5.46077 5.46617 5.56113 5.61457 5.72122 5.88740 6.03981 6.28542 6.75481 6.90723 7.15753 7.65992 7.89258 8.25789 9.20746 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008312 B = 0.004670 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.690595 B = 5994.212861 C = 7278.055819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.619 5.619 4 C 0.474 3.526 5 O -0.545 6.545 6 C 0.125 3.875 7 N -0.580 5.580 8 C -0.249 4.249 9 H 0.077 0.923 10 C -0.049 4.049 11 N -0.917 5.917 12 Si 0.959 3.041 13 H -0.287 1.287 14 H -0.304 1.304 15 H -0.273 1.273 16 C 0.196 3.804 17 C -0.089 4.089 18 C 0.472 3.528 19 O -0.545 6.545 20 O -0.377 6.377 21 C 0.027 3.973 22 C 0.158 3.842 23 C -0.133 4.133 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.106 4.106 27 C -0.131 4.131 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.033 0.967 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.083 0.917 52 H 0.044 0.956 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 -6.016 16.919 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.354 5.354 4 C 0.261 3.739 5 O -0.421 6.421 6 C -0.005 4.005 7 N -0.298 5.298 8 C -0.378 4.378 9 H 0.095 0.905 10 C -0.244 4.244 11 N -0.563 5.563 12 Si 0.789 3.211 13 H -0.214 1.214 14 H -0.231 1.231 15 H -0.198 1.198 16 C 0.070 3.930 17 C -0.129 4.129 18 C 0.317 3.683 19 O -0.436 6.436 20 O -0.293 6.293 21 C -0.066 4.066 22 C 0.055 3.945 23 C -0.171 4.171 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.144 4.144 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.052 0.948 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.101 0.899 52 H 0.062 0.938 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.827 -5.389 16.475 18.630 hybrid contribution 0.742 0.642 -1.167 1.524 sum -6.085 -4.747 15.308 17.144 Atomic orbital electron populations 1.22179 0.95480 1.03073 1.01610 1.21770 0.94792 0.81199 1.04325 1.48527 1.66723 1.15043 1.05142 1.22884 0.76630 0.87522 0.86908 1.90632 1.44763 1.19432 1.87312 1.21230 1.01418 0.93730 0.84133 1.44294 1.07978 1.43796 1.33754 1.19447 0.90157 1.10704 1.17533 0.90480 1.25364 1.01228 0.94931 1.02831 1.70235 1.45438 1.04797 1.35852 0.85394 0.79322 0.76242 0.80154 1.21423 1.23098 1.19848 1.20486 0.88018 0.87040 0.97502 1.22069 0.95622 0.96208 0.98983 1.24637 0.82081 0.80371 0.81194 1.90520 1.51204 1.74715 1.27173 1.86564 1.55292 1.30831 1.56651 1.23483 0.88743 0.95049 0.99335 1.21005 0.94008 0.93668 0.85824 1.21870 0.96462 1.00140 0.98634 1.21434 0.99405 0.96954 0.96609 1.21535 0.95387 0.97564 1.01269 1.21428 0.96147 1.00185 0.96672 1.21853 0.98754 0.97654 0.98667 0.92550 0.94114 0.89491 0.89932 0.88389 0.89089 0.89220 0.94695 0.91504 0.95648 0.91053 0.87760 0.92803 0.91728 0.85038 0.87612 0.92530 0.93915 0.92242 0.89807 0.94768 0.90333 0.92082 0.89864 0.93761 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 71.98 0.74 -2.01 16 2 C 0.10 1.87 5.90 86.38 0.51 2.38 16 3 N -0.62 -16.92 2.42 -797.84 -1.93 -18.85 16 4 C 0.47 17.77 6.81 87.66 0.60 18.37 16 5 O -0.55 -25.49 10.24 -3.06 -0.03 -25.52 16 6 C 0.13 4.70 4.74 85.63 0.41 5.10 16 7 N -0.58 -28.18 2.12 -706.34 -1.49 -29.68 16 8 C -0.25 -13.37 9.70 84.04 0.82 -12.55 16 9 H 0.08 4.03 7.94 -2.92 -0.02 4.01 16 10 C -0.05 -2.71 4.89 84.86 0.42 -2.29 16 11 N -0.92 -53.78 8.63 21.65 0.19 -53.59 16 12 Si 0.96 45.73 29.62 68.60 2.03 47.77 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.20 9.87 4.21 86.38 0.36 10.23 16 17 C -0.09 -4.40 4.61 29.85 0.14 -4.27 16 18 C 0.47 22.00 7.96 71.24 0.57 22.56 16 19 O -0.55 -26.87 15.73 21.97 0.35 -26.52 16 20 O -0.38 -15.32 10.56 -51.42 -0.54 -15.86 16 21 C 0.03 0.80 10.56 113.37 1.20 1.99 16 22 C 0.16 3.95 2.55 44.99 0.11 4.07 16 23 C -0.13 -3.72 5.13 30.59 0.16 -3.56 16 24 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 25 C -0.12 -2.72 5.92 30.60 0.18 -2.54 16 26 C -0.11 -2.27 5.92 30.58 0.18 -2.09 16 27 C -0.13 -3.58 5.13 30.57 0.16 -3.42 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.84 7.22 -2.39 -0.02 0.82 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.50 6.44 -2.39 -0.02 1.48 16 32 H 0.10 1.31 7.92 -2.39 -0.02 1.29 16 33 H 0.09 3.09 7.29 -2.39 -0.02 3.07 16 34 H 0.09 2.93 6.99 -2.39 -0.02 2.91 16 35 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.07 3.87 5.78 -2.38 -0.01 3.85 16 37 H 0.03 1.19 7.94 -2.39 -0.02 1.17 16 38 H 0.07 3.47 6.42 -2.39 -0.02 3.45 16 39 H 0.10 6.05 6.36 -2.38 -0.02 6.04 16 40 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 41 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 42 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.11 1.95 7.79 -2.39 -0.02 1.94 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.64 6.17 -2.39 -0.01 1.63 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.04 1.65 6.17 -2.39 -0.01 1.63 16 53 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.93 405.41 6.16 -65.77 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.88 Total: 26.64 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 6.72 Total: 29.85 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.24 Total: -102.13 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -0.23 Total: -67.90 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.77 kcal Total: -71.93 6.16 -65.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475795.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.863 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds