Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47013 * 2 1 4 4 C 1.46505 * 119.99962 * 269.99844 * 3 2 1 5 5 C 1.50703 * 109.46890 * 270.00027 * 4 3 2 6 6 H 1.08001 * 120.00262 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99540 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46973 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47299 * 119.99712 * 9 7 5 12 12 H 1.48493 * 109.46983 * 239.99855 * 9 7 5 13 13 C 1.34774 * 119.99819 * 90.00510 * 3 2 1 14 14 O 1.21283 * 119.99721 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00270 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47404 * 180.02562 * 15 13 3 17 17 C 1.46847 * 110.99904 * 293.95826 * 16 15 13 18 18 C 1.53036 * 109.52272 * 174.16031 * 17 16 15 19 19 C 1.53121 * 109.28021 * 59.17448 * 18 17 16 20 20 C 1.53119 * 109.16297 * 302.34812 * 19 18 17 21 21 H 1.09000 * 109.50078 * 297.67530 * 20 19 18 22 22 C 1.53000 * 109.50328 * 177.59381 * 20 19 18 23 23 C 1.52999 * 109.47278 * 65.07911 * 22 20 19 24 24 C 1.50698 * 109.47248 * 179.97438 * 23 22 20 25 25 O 1.20822 * 119.99804 * 0.02562 * 24 23 22 26 26 O 1.34231 * 120.00053 * 180.02562 * 24 23 22 27 27 C 1.45198 * 116.99983 * 180.02562 * 26 24 23 28 28 C 1.46850 * 110.99693 * 169.70324 * 16 15 13 29 29 H 1.08998 * 109.46896 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47120 * 300.00082 * 1 2 3 31 31 H 1.09005 * 109.46684 * 59.99666 * 1 2 3 32 32 H 1.09004 * 109.47120 * 239.99918 * 2 1 3 33 33 H 1.09005 * 109.47119 * 120.00021 * 2 1 3 34 34 H 1.08992 * 109.47026 * 30.00007 * 4 3 2 35 35 H 1.09001 * 109.46583 * 150.00336 * 4 3 2 36 36 H 0.97000 * 119.99903 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47272 * 60.00309 * 15 13 3 38 38 H 1.08999 * 109.47261 * 300.00773 * 15 13 3 39 39 H 1.08995 * 109.46395 * 54.14148 * 17 16 15 40 40 H 1.09005 * 109.45727 * 294.17187 * 17 16 15 41 41 H 1.09007 * 109.50596 * 299.23765 * 18 17 16 42 42 H 1.08996 * 109.50704 * 179.11565 * 18 17 16 43 43 H 1.09000 * 109.52344 * 182.44380 * 19 18 17 44 44 H 1.08998 * 109.52223 * 62.25529 * 19 18 17 45 45 H 1.08998 * 109.47230 * 305.07538 * 22 20 19 46 46 H 1.09004 * 109.46598 * 185.07812 * 22 20 19 47 47 H 1.09008 * 109.46866 * 59.99380 * 23 22 20 48 48 H 1.09001 * 109.47046 * 300.00263 * 23 22 20 49 49 H 1.09002 * 109.47379 * 59.99613 * 27 26 24 50 50 H 1.09001 * 109.46782 * 299.99696 * 27 26 24 51 51 H 1.09004 * 109.47085 * 179.97438 * 27 26 24 52 52 H 1.09000 * 109.43122 * 65.80710 * 28 16 15 53 53 H 1.09000 * 109.49472 * 305.83687 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9135 2.0964 -3.4170 10 1 6.6005 1.2394 -2.4176 11 1 5.9206 1.4182 -4.7381 12 1 6.6216 3.3972 -3.5246 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9915 1.3063 2.4723 16 7 2.3093 2.2064 3.5889 17 6 3.7454 2.5102 3.6276 18 6 4.0173 3.5598 4.7076 19 6 3.5536 3.0213 6.0640 20 6 2.0662 2.6673 5.9824 21 1 1.4893 3.5670 5.7683 22 6 1.6088 2.0724 7.3157 23 6 1.7101 3.1363 8.4105 24 6 1.2590 2.5505 9.7237 25 8 0.8945 1.3999 9.7783 26 8 1.2623 3.3069 10.8325 27 6 0.8155 2.6766 12.0618 28 6 1.8500 1.6439 4.8653 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6757 3.5177 -4.4431 37 1 2.6213 0.4186 2.5302 38 1 0.9434 1.0124 2.5299 39 1 4.0613 2.8961 2.6584 40 1 4.3027 1.6016 3.8557 41 1 3.4711 4.4734 4.4729 42 1 5.0853 3.7735 4.7468 43 1 3.7055 3.7824 6.8293 44 1 4.1269 2.1295 6.3171 45 1 2.2445 1.2250 7.5726 46 1 0.5750 1.7378 7.2287 47 1 1.0744 3.9837 8.1535 48 1 2.7438 3.4709 8.4974 49 1 1.4565 1.8241 12.2869 50 1 -0.2131 2.3362 11.9425 51 1 0.8681 3.3960 12.8790 52 1 2.4157 0.7391 5.0872 53 1 0.7897 1.4012 4.7953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880038955.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -153.790228 kcal Electronic energy + Delta-G solvation = -30271.223982 eV Core-core repulsion = 26141.592879 eV Total energy + Delta-G solvation = -4129.631103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50951 -41.02164 -39.64046 -37.63448 -36.92268 -35.82503 -34.89660 -33.41597 -31.62030 -31.17522 -29.80906 -28.55134 -27.86266 -25.77665 -24.96029 -24.25647 -23.55055 -22.63304 -21.34076 -20.60311 -19.78529 -18.63356 -18.56466 -17.94401 -17.61993 -17.52241 -17.21419 -16.55724 -16.47762 -16.01293 -15.77681 -15.35756 -15.15363 -15.02945 -14.66029 -14.57318 -14.42257 -14.31911 -14.04157 -13.76341 -13.60143 -13.48135 -13.27771 -13.19993 -13.10954 -12.82865 -12.73396 -12.69523 -12.58700 -12.45096 -12.14376 -12.13023 -11.88893 -11.84142 -11.76751 -11.68444 -11.52439 -11.46846 -11.32700 -11.04551 -10.64891 -10.39372 -9.38336 -9.19081 -8.21859 -6.36788 1.20397 1.35059 1.37384 1.49072 1.80804 1.90829 2.25606 2.41498 3.02099 3.07226 3.70023 3.71719 3.82752 3.90149 4.02599 4.08878 4.18510 4.25452 4.29163 4.30589 4.34280 4.37987 4.41621 4.46420 4.55922 4.60379 4.66493 4.67512 4.71846 4.75087 4.84695 4.88172 4.92911 4.97129 5.00425 5.06811 5.09018 5.14360 5.23148 5.25112 5.30358 5.38145 5.40403 5.48568 5.59058 5.59819 5.88688 6.03376 6.08363 6.24525 6.71981 6.74785 6.87029 7.29790 7.57961 8.85046 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.002010 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.242137 B =13923.990603 C =14774.945014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.577 6.577 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.052 3.948 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.076 4.076 21 H 0.080 0.920 22 C -0.092 4.092 23 C -0.111 4.111 24 C 0.460 3.540 25 O -0.543 6.543 26 O -0.368 6.368 27 C 0.027 3.973 28 C 0.061 3.939 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.020 0.980 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.129 0.871 52 H 0.040 0.960 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -5.100 28.563 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.079 4.079 16 N -0.262 5.262 17 C -0.076 4.076 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.095 4.095 21 H 0.098 0.902 22 C -0.130 4.130 23 C -0.148 4.148 24 C 0.305 3.695 25 O -0.433 6.433 26 O -0.284 6.284 27 C -0.066 4.066 28 C -0.066 4.066 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.038 0.962 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.147 0.853 52 H 0.058 0.942 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.122 -4.331 28.368 29.150 hybrid contribution 1.128 -0.714 -0.848 1.581 sum -3.994 -5.044 27.520 28.262 Atomic orbital electron populations 1.22150 0.94551 1.03435 1.01692 1.21721 0.95342 0.81479 1.03674 1.48296 1.64357 1.15026 1.06211 1.18650 0.95133 0.91447 0.80464 1.21732 0.97896 1.31774 1.06450 0.93027 1.25863 1.02360 0.94534 0.96471 1.70063 1.37646 1.34265 1.14824 0.85373 0.79079 0.77989 0.78382 1.19167 1.19419 1.20755 1.21182 0.77394 0.86738 0.86243 1.90607 1.47051 1.20307 1.87696 1.21961 1.04135 0.93861 0.87928 1.61478 1.17183 1.44621 1.02901 1.22151 0.87233 0.98062 1.00171 1.21503 1.01004 0.97862 0.94446 1.21715 0.95225 1.01621 0.96363 1.21107 0.96914 0.98736 0.92718 0.90158 1.21298 1.02559 0.97209 0.91920 1.21558 1.05924 1.00773 0.86521 1.24419 0.73584 0.84399 0.87100 1.90664 1.45569 1.20190 1.86877 1.86517 1.78134 1.45149 1.18618 1.23504 0.99930 1.00013 0.83127 1.22214 1.00949 0.95959 0.87478 0.88653 0.92071 0.94370 0.91134 0.88493 0.96247 0.98706 0.92459 0.90829 0.85820 0.93015 0.95155 0.92489 0.91082 0.89378 0.91642 0.91474 0.91245 0.85696 0.85557 0.92125 0.92147 0.85316 0.94171 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.10 3.08 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.13 2.46 -826.14 -2.03 -28.16 16 4 C 0.26 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.50 21.04 7.35 87.66 0.64 21.68 16 14 O -0.58 -30.44 13.93 -3.04 -0.04 -30.48 16 15 C 0.05 1.51 4.00 85.55 0.34 1.85 16 16 N -0.54 -15.30 4.39 -900.93 -3.96 -19.26 16 17 C 0.05 1.57 5.11 86.33 0.44 2.01 16 18 C -0.11 -2.62 6.09 30.65 0.19 -2.44 16 19 C -0.11 -1.80 4.98 30.67 0.15 -1.65 16 20 C -0.08 -1.22 2.35 -10.74 -0.03 -1.25 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 C -0.09 -1.23 3.98 30.59 0.12 -1.11 16 23 C -0.11 -1.18 5.57 29.85 0.17 -1.01 16 24 C 0.46 7.44 7.96 71.24 0.57 8.01 16 25 O -0.54 -12.24 15.73 21.98 0.35 -11.89 16 26 O -0.37 -5.34 10.57 -51.42 -0.54 -5.88 16 27 C 0.03 0.27 10.56 113.37 1.20 1.47 16 28 C 0.06 1.21 4.75 86.32 0.41 1.62 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.41 7.22 -2.38 -0.02 1.39 16 31 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 33 H 0.10 2.31 6.44 -2.38 -0.02 2.29 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.07 1.88 7.38 -2.39 -0.02 1.87 16 38 H 0.12 2.89 7.02 -2.39 -0.02 2.87 16 39 H 0.05 2.09 5.80 -2.39 -0.01 2.08 16 40 H 0.03 0.84 8.14 -2.38 -0.02 0.83 16 41 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.09 1.02 6.70 -2.39 -0.02 1.00 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 46 H 0.07 1.02 8.10 -2.38 -0.02 1.00 16 47 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.13 0.93 6.63 -2.39 -0.02 0.91 16 49 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 50 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 51 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 52 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 Total: -1.00 -80.78 418.85 3.55 -77.23 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.87 Total: 13.59 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 6.60 Total: 13.99 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -5.70 Total: -104.13 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.24 Total: -48.26 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -80.78 3.55 -77.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880038955.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.560 kcal (2) G-P(sol) polarization free energy of solvation -80.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds