Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 C 1.50701 * 109.46518 * 119.99768 * 2 1 3 5 5 O 1.21283 * 119.99989 * 93.92081 * 4 2 1 6 6 N 1.34774 * 120.00165 * 273.91021 * 4 2 1 7 7 C 1.46502 * 119.99990 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00310 * 180.02562 * 6 4 2 9 9 C 1.50696 * 109.47227 * 90.00258 * 8 6 4 10 10 H 1.08001 * 120.00071 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00146 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00042 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99874 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47134 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46884 * 119.99697 * 13 11 9 16 16 H 1.48498 * 109.47053 * 239.99339 * 13 11 9 17 17 N 1.46898 * 109.47060 * 239.99780 * 2 1 3 18 18 C 1.46850 * 110.99944 * 186.04507 * 17 2 1 19 19 C 1.53036 * 109.54366 * 185.84901 * 18 17 2 20 20 H 1.09006 * 109.53476 * 60.74398 * 19 18 17 21 21 O 1.42895 * 109.50461 * 180.85120 * 19 18 17 22 22 C 1.53139 * 109.26932 * 300.79192 * 19 18 17 23 23 C 1.53028 * 109.14476 * 57.56980 * 22 19 18 24 24 C 1.53081 * 109.52483 * 182.27461 * 23 22 19 25 25 C 1.53103 * 109.15796 * 296.95122 * 24 23 22 26 26 O 1.42900 * 109.41922 * 302.52449 * 25 24 23 27 27 C 1.42889 * 114.12483 * 61.16625 * 26 25 24 28 28 C 1.53087 * 109.50109 * 62.55782 * 23 22 19 29 29 C 1.46866 * 110.99880 * 310.26163 * 17 2 1 30 30 H 1.08999 * 109.47321 * 300.00606 * 1 2 3 31 31 H 1.09010 * 109.46770 * 60.00163 * 1 2 3 32 32 H 1.08997 * 109.47854 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47649 * 89.99452 * 7 6 4 34 34 H 1.09001 * 109.46952 * 210.00201 * 7 6 4 35 35 H 1.09008 * 109.46660 * 329.99069 * 7 6 4 36 36 H 1.08992 * 109.47280 * 210.00435 * 8 6 4 37 37 H 1.09007 * 109.46765 * 330.00010 * 8 6 4 38 38 H 0.96991 * 119.99900 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.46181 * 65.82480 * 18 17 2 40 40 H 1.09003 * 109.44413 * 305.86145 * 18 17 2 41 41 H 0.96703 * 113.99589 * 299.79340 * 21 19 18 42 42 H 1.08999 * 109.52060 * 177.46968 * 22 19 18 43 43 H 1.08998 * 109.52488 * 297.66497 * 22 19 18 44 44 H 1.09000 * 109.52267 * 56.85815 * 24 23 22 45 45 H 1.08999 * 109.51927 * 177.04556 * 24 23 22 46 46 H 1.08994 * 109.48274 * 182.53213 * 25 24 23 47 47 H 1.09006 * 109.47718 * 62.50000 * 25 24 23 48 48 H 1.08998 * 109.48545 * 178.83341 * 27 26 25 49 49 H 1.09003 * 109.49481 * 58.79561 * 27 26 25 50 50 H 1.09004 * 109.52786 * 182.94336 * 28 23 22 51 51 H 1.09004 * 109.52714 * 303.07580 * 28 23 22 52 52 H 1.09005 * 109.46389 * 294.30200 * 29 17 2 53 53 H 1.08998 * 109.46352 * 54.28358 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3020 -1.8918 1.1811 6 7 2.1817 -0.0329 2.3860 7 6 1.8555 1.3941 2.4458 8 6 2.6704 -0.7233 3.5821 9 6 4.1742 -0.6394 3.6313 10 1 4.7122 -0.1237 2.8496 11 6 4.8635 -1.2218 4.6738 12 7 4.2084 -1.8502 5.6255 13 14 6.7275 -1.1172 4.7352 14 1 7.2200 -0.3618 3.5554 15 1 7.1434 -0.4201 5.9788 16 1 7.3009 -2.4869 4.7201 17 7 2.0196 -0.6925 -1.1994 18 6 3.4804 -0.8384 -1.1633 19 6 3.9687 -1.4299 -2.4876 20 1 3.7027 -0.7606 -3.3059 21 8 5.3880 -1.5900 -2.4442 22 6 3.3068 -2.7934 -2.7067 23 6 1.7863 -2.6217 -2.6897 24 6 1.1152 -3.9880 -2.8513 25 6 1.4868 -4.5719 -4.2170 26 8 1.0901 -3.6632 -5.2460 27 6 1.7243 -2.3848 -5.1727 28 6 1.3617 -1.7124 -3.8458 29 6 1.3596 -1.9944 -1.3617 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 0.8081 1.5162 2.7216 34 1 2.4863 1.8801 3.1902 35 1 2.0297 1.8478 1.4701 36 1 2.2509 -0.2517 4.4707 37 1 2.3657 -1.7693 3.5477 38 1 4.6933 -2.2596 6.3591 39 1 3.7590 -1.5019 -0.3446 40 1 3.9390 0.1386 -1.0110 41 1 5.8728 -0.7645 -2.3077 42 1 3.6170 -3.1983 -3.6700 43 1 3.6054 -3.4754 -1.9106 44 1 1.4586 -4.6580 -2.0631 45 1 0.0333 -3.8724 -2.7867 46 1 0.9758 -5.5245 -4.3563 47 1 2.5647 -4.7270 -4.2649 48 1 1.3845 -1.7624 -6.0004 49 1 2.8053 -2.5111 -5.2328 50 1 0.2851 -1.5475 -3.8032 51 1 1.8800 -0.7567 -3.7670 52 1 1.6463 -2.6519 -0.5408 53 1 0.2784 -1.8567 -1.3561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880590497.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -146.517201 kcal Electronic energy + Delta-G solvation = -32997.113407 eV Core-core repulsion = 28867.797686 eV Total energy + Delta-G solvation = -4129.315721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12199 -40.75416 -38.87490 -37.39597 -36.53336 -35.61733 -34.74473 -32.67642 -31.95612 -30.59501 -29.59841 -28.83149 -27.39225 -26.19147 -25.46630 -24.63956 -23.99822 -22.78775 -22.00504 -19.81537 -19.48504 -18.76033 -18.27638 -18.08272 -17.52103 -17.07186 -16.95950 -16.65373 -16.35309 -16.21229 -15.70290 -15.62733 -15.48822 -15.28035 -14.80797 -14.58711 -14.56338 -14.19252 -13.86144 -13.71138 -13.61158 -13.48220 -13.16737 -13.15953 -13.04255 -12.89843 -12.82587 -12.75819 -12.61889 -12.46991 -12.26355 -12.17832 -12.11654 -11.80533 -11.70852 -11.61688 -11.20853 -11.14383 -11.08043 -10.76046 -10.70441 -10.27760 -9.43532 -9.17094 -8.27811 -6.42848 1.30618 1.33491 1.44605 1.78389 2.27377 2.42961 2.66395 3.01646 3.02022 3.20784 3.57843 3.64689 3.79207 3.87224 3.90643 4.02588 4.06992 4.13956 4.15926 4.23993 4.32900 4.36745 4.41502 4.45530 4.57155 4.67010 4.69353 4.73783 4.79992 4.82990 4.83536 4.88457 4.92586 4.93167 4.95348 4.98739 5.02843 5.03248 5.11123 5.17904 5.22180 5.28414 5.36299 5.47739 5.52052 5.78858 5.85522 5.93475 6.00989 6.30644 6.64723 6.76598 6.80004 7.23681 7.46073 8.79161 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.003502 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.604317 B = 7993.364242 C = 8767.777775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.127 0.873 4 C 0.469 3.531 5 O -0.589 6.589 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.538 4.538 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.267 1.267 16 H -0.284 1.284 17 N -0.482 5.482 18 C 0.013 3.987 19 C 0.119 3.881 20 H 0.089 0.911 21 O -0.585 6.585 22 C -0.104 4.104 23 C -0.043 4.043 24 C -0.143 4.143 25 C 0.063 3.937 26 O -0.397 6.397 27 C 0.054 3.946 28 C -0.127 4.127 29 C 0.046 3.954 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.021 0.979 37 H -0.008 1.008 38 H 0.267 0.733 39 H 0.016 0.984 40 H 0.080 0.920 41 H 0.393 0.607 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.050 0.950 48 H 0.110 0.890 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.033 0.967 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 6.532 -21.227 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.045 4.045 3 H 0.144 0.856 4 C 0.257 3.743 5 O -0.470 6.470 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.139 3.861 9 C -0.577 4.577 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.210 1.210 17 N -0.205 5.205 18 C -0.116 4.116 19 C 0.060 3.940 20 H 0.107 0.893 21 O -0.392 6.392 22 C -0.142 4.142 23 C -0.044 4.044 24 C -0.181 4.181 25 C -0.013 4.013 26 O -0.316 6.316 27 C -0.022 4.022 28 C -0.165 4.165 29 C -0.082 4.082 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.243 0.757 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.068 0.932 48 H 0.128 0.872 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.051 0.949 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.987 5.481 -21.717 23.779 hybrid contribution 1.779 -0.386 2.301 2.934 sum -6.208 5.095 -19.416 21.012 Atomic orbital electron populations 1.21842 0.89911 1.02769 1.04734 1.22142 0.98877 0.99114 0.84332 0.85579 1.22616 0.77934 0.87600 0.86164 1.90597 1.53316 1.18371 1.84741 1.48343 1.63220 1.11554 1.10810 1.22005 1.01352 0.79382 1.03915 1.18686 0.93410 0.91393 0.82592 1.21678 0.92836 1.35346 1.07848 0.93132 1.25850 1.03814 0.94423 0.95043 1.70053 1.37680 1.36654 1.12426 0.85401 0.79174 0.77889 0.78567 1.19070 1.19147 1.20999 1.62557 1.04035 1.20721 1.33231 1.22924 0.89406 1.00773 0.98508 1.21753 0.80010 0.96969 0.95238 0.89290 1.86486 1.18384 1.38555 1.95794 1.21644 0.94825 0.96090 1.01639 1.20415 0.93088 0.95616 0.95259 1.22163 1.01606 0.95949 0.98376 1.22609 0.99625 0.93049 0.86051 1.87883 1.68336 1.24689 1.50704 1.22806 0.96977 0.84193 0.98230 1.22113 1.02583 0.99055 0.92731 1.22456 0.99468 0.89892 0.96365 0.90617 0.87722 0.93181 0.90834 0.91729 0.88704 0.96145 0.98950 0.92416 0.96524 0.90161 0.75698 0.90237 0.94621 0.91962 0.90179 0.87619 0.93194 0.87181 0.93155 0.90605 0.89111 0.94859 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.59 71.98 0.62 -2.18 16 2 C 0.07 1.81 2.29 44.17 0.10 1.91 16 3 H 0.13 2.77 6.01 -2.39 -0.01 2.76 16 4 C 0.47 18.85 5.93 87.66 0.52 19.37 16 5 O -0.59 -29.76 11.91 -3.04 -0.04 -29.80 16 6 N -0.61 -25.36 2.86 -851.13 -2.43 -27.79 16 7 C 0.08 2.16 10.04 127.77 1.28 3.44 16 8 C 0.26 14.20 5.16 85.63 0.44 14.65 16 9 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 10 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 13 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 17 N -0.48 -12.69 4.08 -875.65 -3.57 -16.26 16 18 C 0.01 0.38 4.52 86.32 0.39 0.77 16 19 C 0.12 3.02 3.28 30.65 0.10 3.12 16 20 H 0.09 1.79 6.53 -2.38 -0.02 1.77 16 21 O -0.58 -15.80 13.32 -148.98 -1.98 -17.78 16 22 C -0.10 -2.76 3.88 30.65 0.12 -2.64 16 23 C -0.04 -0.99 0.51 -52.14 -0.03 -1.02 16 24 C -0.14 -3.11 4.92 30.66 0.15 -2.96 16 25 C 0.06 1.22 6.57 72.02 0.47 1.70 16 26 O -0.40 -8.23 10.76 -148.98 -1.60 -9.84 16 27 C 0.05 0.91 6.57 72.02 0.47 1.39 16 28 C -0.13 -2.27 4.51 30.66 0.14 -2.13 16 29 C 0.05 1.28 3.36 86.29 0.29 1.56 16 30 H 0.07 1.43 7.90 -2.39 -0.02 1.42 16 31 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 1.20 6.19 -2.39 -0.01 1.18 16 33 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 34 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.09 2.01 5.83 -2.38 -0.01 1.99 16 36 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 37 H -0.01 -0.48 7.42 -2.38 -0.02 -0.50 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.02 0.70 6.04 -2.39 -0.01 0.69 16 40 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 41 H 0.39 7.32 9.08 -74.06 -0.67 6.65 16 42 H 0.08 1.89 5.03 -2.39 -0.01 1.88 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.05 0.98 6.67 -2.38 -0.02 0.96 16 48 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 0.85 6.55 -2.39 -0.02 0.84 16 50 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 51 H 0.09 1.54 5.98 -2.39 -0.01 1.52 16 52 H 0.03 1.27 5.65 -2.38 -0.01 1.26 16 53 H 0.09 2.24 5.83 -2.39 -0.01 2.23 16 Total: -1.00 -78.44 388.27 -1.30 -79.74 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.25 Total: 23.96 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.77 Total: 6.79 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -5.72 Total: -100.65 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -3.62 Total: -57.42 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -78.44 -1.30 -79.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880590497.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.775 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds