Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 O 1.45204 * 109.46889 * 119.99199 * 2 1 3 5 5 C 1.34227 * 116.99775 * 90.00226 * 4 2 1 6 6 O 1.20826 * 120.00028 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99925 * 179.97438 * 5 4 2 8 8 C 1.53117 * 109.52143 * 60.32067 * 7 5 4 9 9 C 1.53037 * 109.27796 * 177.55898 * 8 7 5 10 10 N 1.46849 * 109.52175 * 300.81781 * 9 8 7 11 11 C 1.46902 * 110.99695 * 185.84066 * 10 9 8 12 12 H 1.09005 * 109.47091 * 297.82848 * 11 10 9 13 13 C 1.53000 * 109.47024 * 177.82979 * 11 10 9 14 14 C 1.50700 * 109.47620 * 57.83086 * 11 10 9 15 15 O 1.21282 * 119.99828 * 30.56727 * 14 11 10 16 16 N 1.34769 * 120.00120 * 210.57384 * 14 11 10 17 17 C 1.46492 * 120.00184 * 354.74702 * 16 14 11 18 18 C 1.46505 * 120.00048 * 174.75492 * 16 14 11 19 19 C 1.50699 * 109.47369 * 89.99371 * 18 16 14 20 20 H 1.08003 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99978 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00173 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46918 * 60.00173 * 23 21 19 25 25 H 1.48497 * 109.47412 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47038 * 300.00176 * 23 21 19 27 27 C 1.46842 * 111.19818 * 61.74629 * 10 9 8 28 28 C 1.53038 * 109.52116 * 298.25444 * 27 10 9 29 29 H 1.08996 * 109.47411 * 300.00954 * 1 2 3 30 30 H 1.08999 * 109.46662 * 60.00901 * 1 2 3 31 31 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47379 * 239.99461 * 2 1 3 33 33 H 1.09004 * 109.47002 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46764 * 299.99036 * 3 2 1 35 35 H 1.08996 * 109.47905 * 59.99348 * 3 2 1 36 36 H 1.08994 * 109.57757 * 300.15945 * 7 5 4 37 37 H 1.08998 * 109.50602 * 297.49974 * 8 7 5 38 38 H 1.09002 * 109.50732 * 57.61965 * 8 7 5 39 39 H 1.09007 * 109.46217 * 180.80633 * 9 8 7 40 40 H 1.08997 * 109.46452 * 60.83952 * 9 8 7 41 41 H 1.09005 * 109.47145 * 305.83263 * 13 11 10 42 42 H 1.09004 * 109.46991 * 65.82836 * 13 11 10 43 43 H 1.08997 * 109.47269 * 185.83382 * 13 11 10 44 44 H 1.09006 * 109.47201 * 94.51116 * 17 16 14 45 45 H 1.09004 * 109.47510 * 214.50832 * 17 16 14 46 46 H 1.09002 * 109.47396 * 334.50873 * 17 16 14 47 47 H 1.09005 * 109.47011 * 209.99990 * 18 16 14 48 48 H 1.09000 * 109.46885 * 329.99488 * 18 16 14 49 49 H 0.97002 * 120.00100 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.46294 * 178.24515 * 27 10 9 51 51 H 1.08998 * 109.45567 * 58.26162 * 27 10 9 52 52 H 1.09003 * 109.50465 * 299.23901 * 28 27 10 53 53 H 1.08996 * 109.50662 * 179.11954 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2172 -2.0074 1.0854 6 8 1.9974 -2.5749 0.0416 7 6 2.7193 -2.7849 2.2747 8 6 1.7204 -2.6574 3.4281 9 6 2.2052 -3.4980 4.6116 10 7 2.3271 -4.9020 4.1989 11 6 2.6569 -5.7605 5.3444 12 1 3.6227 -5.4647 5.7541 13 6 2.7221 -7.2190 4.8866 14 6 1.5956 -5.6139 6.4042 15 8 0.4521 -5.3636 6.0868 16 7 1.9171 -5.7606 7.7047 17 6 3.2704 -6.1754 8.0824 18 6 0.9132 -5.5054 8.7408 19 6 0.1668 -6.7795 9.0418 20 1 0.4151 -7.6884 8.5138 21 6 -0.8337 -6.7847 9.9905 22 7 -1.1369 -5.6776 10.6323 23 14 -1.7584 -8.3641 10.3641 24 1 -0.8035 -9.3950 10.8442 25 1 -2.7769 -8.1051 11.4133 26 1 -2.4304 -8.8477 9.1312 27 6 3.3160 -5.0556 3.1243 28 6 2.8644 -4.2616 1.8964 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4426 -0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6766 1.9565 0.8898 36 1 3.6871 -2.3918 2.5858 37 1 1.6449 -1.6129 3.7304 38 1 0.7429 -3.0147 3.1043 39 1 1.4888 -3.4208 5.4295 40 1 3.1764 -3.1313 4.9438 41 1 1.7920 -7.4839 4.3836 42 1 3.5569 -7.3464 4.1973 43 1 2.8639 -7.8656 5.7524 44 1 3.8753 -5.2934 8.2932 45 1 3.2229 -6.8043 8.9715 46 1 3.7201 -6.7372 7.2637 47 1 1.4070 -5.1511 9.6457 48 1 0.2125 -4.7483 8.3891 49 1 -1.8406 -5.6813 11.3000 50 1 3.4064 -6.1097 2.8619 51 1 4.2819 -4.6815 3.4635 52 1 1.9048 -4.6440 1.5484 53 1 3.6062 -4.3630 1.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886722110.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -145.933853 kcal Electronic energy + Delta-G solvation = -31035.044972 eV Core-core repulsion = 26905.754547 eV Total energy + Delta-G solvation = -4129.290425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90844 -41.13269 -39.36273 -37.89496 -36.52604 -35.54535 -34.64130 -34.05084 -32.01417 -31.39531 -29.63364 -28.23371 -27.42120 -26.79172 -25.74409 -24.28765 -23.38748 -22.72733 -21.66850 -20.71813 -19.83434 -18.87854 -18.66444 -18.07838 -17.72318 -17.25459 -17.08800 -16.61055 -16.31278 -15.81687 -15.65324 -15.44785 -15.03338 -14.90488 -14.66379 -14.61850 -14.32623 -14.08736 -13.97042 -13.94213 -13.47238 -13.33753 -13.29038 -13.18870 -13.17693 -13.00308 -12.85741 -12.73928 -12.65342 -12.60593 -12.47353 -12.38599 -12.17982 -12.16974 -11.94998 -11.76517 -11.71895 -11.53291 -11.46638 -11.24418 -10.63838 -10.39145 -9.38817 -9.20213 -8.21623 -6.35974 1.12017 1.35758 1.40542 1.47467 1.65079 1.85267 2.24640 2.42329 2.91941 3.07640 3.46745 3.60203 3.71377 3.77054 3.79038 3.92580 4.06331 4.11445 4.12300 4.15434 4.23741 4.34334 4.39650 4.41707 4.59147 4.62472 4.68099 4.70736 4.71350 4.72243 4.78107 4.82662 4.82946 4.88316 4.93351 4.97527 5.01405 5.06916 5.09529 5.11710 5.19684 5.22644 5.26959 5.33081 5.50596 5.57308 5.84314 5.98924 6.07744 6.18859 6.70190 6.71737 6.83781 7.30106 7.55481 8.85020 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002360 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.451959 B =11861.022168 C =12673.066254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.356 6.356 5 C 0.470 3.530 6 O -0.535 6.535 7 C -0.074 4.074 8 C -0.095 4.095 9 C 0.060 3.940 10 N -0.542 5.542 11 C 0.079 3.921 12 H 0.088 0.912 13 C -0.137 4.137 14 C 0.500 3.500 15 O -0.579 6.579 16 N -0.613 5.613 17 C 0.076 3.924 18 C 0.263 3.737 19 C -0.539 4.539 20 H 0.052 0.948 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.280 1.280 27 C 0.058 3.942 28 C -0.094 4.094 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.024 0.976 48 H -0.006 1.006 49 H 0.267 0.733 50 H 0.099 0.901 51 H 0.063 0.937 52 H 0.056 0.944 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.203 9.018 -19.597 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 C -0.200 4.200 4 O -0.273 6.273 5 C 0.314 3.686 6 O -0.424 6.424 7 C -0.093 4.093 8 C -0.133 4.133 9 C -0.068 4.068 10 N -0.268 5.268 11 C -0.032 4.032 12 H 0.106 0.894 13 C -0.195 4.195 14 C 0.288 3.712 15 O -0.458 6.458 16 N -0.346 5.346 17 C -0.066 4.066 18 C 0.141 3.859 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.790 3.210 24 H -0.183 1.183 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.069 4.069 28 C -0.132 4.132 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.042 0.958 48 H 0.012 0.988 49 H 0.076 0.924 50 H 0.118 0.882 51 H 0.081 0.919 52 H 0.075 0.925 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.975 8.947 -20.110 26.622 hybrid contribution -0.674 -0.362 0.816 1.119 sum 14.301 8.585 -19.294 25.504 Atomic orbital electron populations 1.22224 0.94032 1.02075 1.04336 1.23001 0.95048 0.94276 0.86095 1.21898 1.02206 0.91616 1.04321 1.86586 1.76652 1.22010 1.42061 1.24061 0.73296 0.81342 0.89882 1.90628 1.49195 1.70514 1.32106 1.21231 1.01855 0.95504 0.90692 1.21422 0.97794 1.00646 0.93411 1.22005 1.00251 0.87487 0.97049 1.61576 1.49720 1.06587 1.08963 1.21594 0.95240 0.96857 0.89530 0.89441 1.21825 1.03544 0.91599 1.02508 1.21183 0.89863 0.76587 0.83574 1.90648 1.23557 1.49738 1.81865 1.48217 1.13645 1.66665 1.06039 1.21969 0.81486 1.00717 1.02440 1.18696 0.86573 0.95284 0.85330 1.21662 1.19051 0.96154 1.20929 0.93018 1.25854 0.97606 1.00059 0.95734 1.70040 1.31906 1.28678 1.26260 0.85501 0.78461 0.79412 0.77641 1.18292 1.20327 1.20573 1.22260 0.92739 1.02048 0.89828 1.21468 1.02938 0.91083 0.97746 0.91194 0.88543 0.94191 0.90662 0.91401 0.88351 0.91130 0.84749 0.89226 0.93083 0.93388 0.92412 0.93269 0.87737 0.91333 0.91267 0.91595 0.88688 0.95823 0.98791 0.92443 0.88242 0.91924 0.92545 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.55 71.98 0.69 -2.11 16 2 C 0.07 1.20 3.18 30.60 0.10 1.30 16 3 C -0.14 -1.56 9.57 71.98 0.69 -0.87 16 4 O -0.36 -7.52 9.81 -51.38 -0.50 -8.02 16 5 C 0.47 10.84 7.23 71.24 0.52 11.35 16 6 O -0.53 -15.01 15.20 21.96 0.33 -14.68 16 7 C -0.07 -1.43 2.70 -11.46 -0.03 -1.46 16 8 C -0.09 -2.29 5.31 30.65 0.16 -2.12 16 9 C 0.06 1.64 5.14 86.33 0.44 2.08 16 10 N -0.54 -14.74 4.27 -875.50 -3.74 -18.48 16 11 C 0.08 2.22 1.62 44.17 0.07 2.29 16 12 H 0.09 1.90 6.77 -2.38 -0.02 1.88 16 13 C -0.14 -3.25 8.44 71.98 0.61 -2.65 16 14 C 0.50 20.92 5.62 87.66 0.49 21.42 16 15 O -0.58 -30.98 15.27 -3.04 -0.05 -31.02 16 16 N -0.61 -26.02 2.86 -851.13 -2.43 -28.45 16 17 C 0.08 2.21 9.87 127.77 1.26 3.47 16 18 C 0.26 14.34 5.14 85.63 0.44 14.78 16 19 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 20 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 21 C 0.01 0.37 5.46 84.65 0.46 0.83 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 23 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.06 1.05 5.18 86.33 0.45 1.49 16 28 C -0.09 -1.84 4.68 30.65 0.14 -1.69 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.41 7.16 -2.39 -0.02 1.40 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.76 6.18 -2.38 -0.01 1.74 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.10 1.60 6.58 -2.38 -0.02 1.58 16 43 H 0.07 1.61 7.22 -2.39 -0.02 1.59 16 44 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.07 2.03 8.11 -2.38 -0.02 2.01 16 46 H 0.09 2.06 5.40 -2.39 -0.01 2.05 16 47 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 48 H -0.01 -0.38 7.50 -2.39 -0.02 -0.40 16 49 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 50 H 0.10 1.56 6.08 -2.39 -0.01 1.55 16 51 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 53 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.12 416.84 3.53 -77.60 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.87 Total: 15.26 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.73 Total: 16.77 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -5.88 Total: -103.58 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.22 Total: -53.72 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -81.12 3.53 -77.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886722110.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.339 kcal (2) G-P(sol) polarization free energy of solvation -81.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds