Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46994 * 2 1 4 4 C 1.46503 * 119.99696 * 90.00032 * 3 2 1 5 5 C 1.50703 * 109.46875 * 90.00020 * 4 3 2 6 6 H 1.07992 * 120.00379 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99512 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00366 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99595 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47105 * 60.00173 * 9 7 5 11 11 H 1.48503 * 109.46640 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46820 * 299.99789 * 9 7 5 13 13 C 1.34774 * 120.00064 * 270.00077 * 3 2 1 14 14 O 1.21284 * 119.99704 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00055 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.46752 * 173.74750 * 15 13 3 17 17 C 1.46848 * 110.99455 * 169.40141 * 16 15 13 18 18 C 1.53042 * 109.52153 * 185.84205 * 17 16 15 19 19 C 1.53126 * 109.27514 * 300.81944 * 18 17 16 20 20 C 1.50703 * 109.57230 * 177.59207 * 19 18 17 21 21 O 1.20820 * 120.00108 * 240.28341 * 20 19 18 22 22 O 1.34230 * 119.99870 * 60.28604 * 20 19 18 23 23 C 1.45206 * 116.99976 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47119 * 149.99649 * 23 22 20 25 25 C 1.52997 * 109.46988 * 270.00339 * 23 22 20 26 26 C 1.53118 * 109.16066 * 57.65495 * 19 18 17 27 27 C 1.46846 * 111.00425 * 293.60905 * 16 15 13 28 28 H 1.09002 * 109.47041 * 300.00009 * 1 2 3 29 29 H 1.09000 * 109.47470 * 59.99758 * 1 2 3 30 30 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47375 * 240.00307 * 2 1 3 32 32 H 1.09004 * 109.47026 * 120.00010 * 2 1 3 33 33 H 1.09000 * 109.47085 * 209.99628 * 4 3 2 34 34 H 1.09001 * 109.47143 * 330.00067 * 4 3 2 35 35 H 0.96999 * 120.00026 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46787 * 293.75180 * 15 13 3 37 37 H 1.09000 * 109.47013 * 53.74864 * 15 13 3 38 38 H 1.09000 * 109.46501 * 305.85172 * 17 16 15 39 39 H 1.09001 * 109.46489 * 65.82722 * 17 16 15 40 40 H 1.09001 * 109.50491 * 180.87976 * 18 17 16 41 41 H 1.08995 * 109.50563 * 60.75990 * 18 17 16 42 42 H 1.09004 * 109.51903 * 297.74941 * 19 18 17 43 43 H 1.09003 * 109.46805 * 29.99895 * 23 22 20 44 44 H 1.09003 * 109.47081 * 60.00415 * 24 23 22 45 45 H 1.08996 * 109.47127 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.47709 * 300.00349 * 24 23 22 47 47 H 1.08991 * 109.47596 * 59.99598 * 25 23 22 48 48 H 1.08996 * 109.47061 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.46986 * 299.99446 * 25 23 22 50 50 H 1.08999 * 109.49963 * 182.40006 * 26 19 18 51 51 H 1.09000 * 109.49803 * 62.28812 * 26 19 18 52 52 H 1.09004 * 109.46151 * 294.18036 * 27 16 15 53 53 H 1.09000 * 109.46097 * 54.15336 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3428 1.2310 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3496 3.1273 3.6172 9 14 5.9138 2.0975 3.4164 10 1 6.8409 2.6209 2.3811 11 1 6.1615 2.7984 4.7019 12 1 6.1416 0.6410 3.5942 13 6 2.2429 2.0166 -1.1672 14 8 2.6467 3.1603 -1.1671 15 6 1.9912 1.3064 -2.4723 16 7 2.1649 2.2501 -3.5846 17 6 2.1763 1.5473 -4.8739 18 6 2.5035 2.5380 -5.9936 19 6 1.4518 3.6509 -6.0070 20 6 1.8004 4.6621 -7.0687 21 8 2.0076 5.8124 -6.7626 22 8 1.8806 4.2848 -8.3543 23 6 2.2203 5.3119 -9.3229 24 6 2.9747 4.6792 -10.4939 25 6 0.9392 5.9710 -9.8378 26 6 1.4266 4.3350 -4.6373 27 6 1.1308 3.2923 -3.5571 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0955 3.1411 1.1385 34 1 1.5816 1.6877 2.0284 35 1 3.6758 3.5184 4.4427 36 1 2.6976 0.4835 -2.5802 37 1 0.9737 0.9156 -2.4829 38 1 2.9312 0.7613 -4.8525 39 1 1.1967 1.1049 -5.0552 40 1 2.4965 2.0192 -6.9522 41 1 3.4888 2.9705 -5.8204 42 1 0.4718 3.2234 -6.2188 43 1 2.8506 6.0642 -8.8486 44 1 2.3445 3.9268 -10.9682 45 1 3.2293 5.4501 -11.2211 46 1 3.8874 4.2096 -10.1270 47 1 0.4017 6.4217 -9.0036 48 1 1.1941 6.7417 -10.5652 49 1 0.3089 5.2186 -10.3121 50 1 0.6503 5.1001 -4.6270 51 1 2.3951 4.7958 -4.4429 52 1 0.1560 2.8417 -3.7445 53 1 1.1263 3.7737 -2.5792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886723607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -150.823636 kcal Electronic energy + Delta-G solvation = -30649.376917 eV Core-core repulsion = 26519.874455 eV Total energy + Delta-G solvation = -4129.502462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87890 -40.91100 -39.36018 -37.88187 -36.84737 -35.06704 -34.70419 -33.92019 -31.84731 -31.57791 -29.98754 -28.29333 -28.20775 -25.92018 -24.60056 -24.30633 -23.78303 -22.89437 -21.64307 -20.72731 -19.82777 -18.83535 -18.59092 -17.92500 -17.63758 -17.30942 -17.09904 -16.49973 -16.40968 -15.85972 -15.64183 -15.26900 -15.24295 -14.95995 -14.61704 -14.54177 -14.41438 -14.30066 -14.03447 -13.81245 -13.59535 -13.31774 -13.23137 -13.17236 -13.10865 -13.05106 -12.81979 -12.73099 -12.62939 -12.49328 -12.42433 -12.21037 -12.12756 -11.94054 -11.82423 -11.75215 -11.72011 -11.58184 -11.49042 -11.23535 -10.63359 -10.43755 -9.38927 -9.14893 -8.20971 -6.35649 1.13376 1.35602 1.40737 1.47572 1.62821 1.93935 2.26953 2.42658 3.00198 3.08083 3.46951 3.67508 3.74447 3.78271 3.81030 3.93731 4.11142 4.14308 4.16179 4.22412 4.28231 4.32543 4.44424 4.47650 4.51424 4.63166 4.65851 4.68121 4.74513 4.76022 4.82624 4.84814 4.85384 4.96144 4.98193 5.02321 5.08109 5.09119 5.11986 5.13531 5.21112 5.24555 5.29655 5.41520 5.50254 5.60534 5.89003 6.01398 6.09355 6.22824 6.71224 6.73175 6.89874 7.30970 7.61158 8.85514 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002207 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.718151 B =12686.085316 C =13401.126817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.493 3.507 14 O -0.582 6.582 15 C 0.055 3.945 16 N -0.550 5.550 17 C 0.060 3.940 18 C -0.100 4.100 19 C -0.073 4.073 20 C 0.469 3.531 21 O -0.543 6.543 22 O -0.349 6.349 23 C 0.067 3.933 24 C -0.143 4.143 25 C -0.166 4.166 26 C -0.092 4.092 27 C 0.063 3.937 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.069 0.931 33 H -0.008 1.008 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.136 0.864 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.047 0.953 52 H 0.057 0.943 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -7.712 -28.622 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.182 1.182 13 C 0.281 3.719 14 O -0.461 6.461 15 C -0.076 4.076 16 N -0.276 5.276 17 C -0.066 4.066 18 C -0.138 4.138 19 C -0.092 4.092 20 C 0.313 3.687 21 O -0.432 6.432 22 O -0.266 6.266 23 C 0.013 3.987 24 C -0.200 4.200 25 C -0.223 4.223 26 C -0.130 4.130 27 C -0.064 4.064 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.010 0.990 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.154 0.846 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.111 0.889 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.260 -6.452 -28.347 29.965 hybrid contribution 0.260 0.628 1.125 1.314 sum -7.000 -5.825 -27.222 28.705 Atomic orbital electron populations 1.22150 0.94725 1.03439 1.01496 1.21735 0.95163 0.81366 1.03948 1.48312 1.64326 1.15171 1.06136 1.18622 0.95094 0.91321 0.80627 1.21697 0.97965 1.31823 1.06339 0.92858 1.25885 1.02394 0.94582 0.96566 1.70050 1.37808 1.34248 1.14853 0.85482 0.79060 0.79111 0.77239 1.20552 1.20434 1.18201 1.21343 0.77364 0.86752 0.86432 1.90643 1.47017 1.20665 1.87796 1.21969 1.03595 0.94797 0.87215 1.61410 1.49658 1.13581 1.02972 1.22203 1.02580 0.95695 0.86159 1.21579 0.97038 0.94874 1.00269 1.21216 1.03754 0.94298 0.89919 1.24123 0.72137 0.88808 0.83612 1.90657 1.47115 1.22632 1.82819 1.86560 1.80280 1.42869 1.16872 1.23010 0.97915 0.89441 0.88371 1.21891 1.00063 1.02523 0.95519 1.22196 0.96689 1.01745 1.01673 1.21342 1.02217 0.97341 0.92115 1.21999 0.92591 0.92978 0.98854 0.94622 0.92169 0.88562 0.87885 0.91211 0.99005 0.96238 0.92507 0.85827 0.89277 0.88427 0.91674 0.87195 0.92629 0.84648 0.91765 0.90344 0.88580 0.91898 0.93988 0.88881 0.90296 0.91031 0.93448 0.92550 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.18 71.98 0.73 -3.02 16 2 C 0.10 2.93 5.85 86.38 0.50 3.43 16 3 N -0.61 -25.63 2.46 -826.12 -2.03 -27.65 16 4 C 0.27 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.00 0.26 5.46 84.66 0.46 0.72 16 8 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 C 0.49 20.46 7.20 87.66 0.63 21.10 16 14 O -0.58 -30.99 14.29 -3.04 -0.04 -31.03 16 15 C 0.05 1.46 3.92 85.56 0.33 1.79 16 16 N -0.55 -14.85 4.35 -900.93 -3.92 -18.76 16 17 C 0.06 1.01 5.46 86.33 0.47 1.48 16 18 C -0.10 -1.70 5.32 30.65 0.16 -1.54 16 19 C -0.07 -1.43 2.69 -11.46 -0.03 -1.46 16 20 C 0.47 11.03 7.23 71.24 0.52 11.55 16 21 O -0.54 -16.90 15.20 21.98 0.33 -16.57 16 22 O -0.35 -6.72 9.82 -51.42 -0.50 -7.23 16 23 C 0.07 1.09 3.18 30.59 0.10 1.19 16 24 C -0.14 -1.42 9.57 71.98 0.69 -0.73 16 25 C -0.17 -2.21 9.55 71.98 0.69 -1.52 16 26 C -0.09 -2.48 4.68 30.64 0.14 -2.34 16 27 C 0.06 1.78 5.12 86.32 0.44 2.22 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.28 7.12 -2.39 -0.02 1.26 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.19 6.61 -2.39 -0.02 2.17 16 32 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 33 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.12 2.69 7.55 -2.39 -0.02 2.67 16 37 H 0.09 1.80 6.83 -2.39 -0.02 1.78 16 38 H 0.10 1.36 8.01 -2.39 -0.02 1.34 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.06 1.31 7.16 -2.39 -0.02 1.29 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 52 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 53 H 0.05 2.01 6.05 -2.39 -0.01 2.00 16 Total: -1.00 -83.71 421.24 3.54 -80.17 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.86 Total: 14.04 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.53 Total: 16.36 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -5.66 Total: -103.80 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.21 Total: -54.83 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -83.71 3.54 -80.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886723607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.653 kcal (2) G-P(sol) polarization free energy of solvation -83.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds