Wall clock time and date at job start Sat Apr 11 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47218 * 2 1 4 4 C 1.46497 * 119.99792 * 274.21609 * 3 2 1 5 5 C 1.50702 * 109.47305 * 269.99748 * 4 3 2 6 6 H 1.08009 * 119.99607 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00489 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00213 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47014 * 60.00385 * 9 7 5 11 11 H 1.48495 * 109.46803 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46827 * 300.00077 * 9 7 5 13 13 C 1.34778 * 120.00180 * 94.21268 * 3 2 1 14 14 O 1.21278 * 119.99554 * 185.30442 * 13 3 2 15 15 C 1.50700 * 119.99859 * 5.30637 * 13 3 2 16 16 N 1.46903 * 109.46864 * 176.25386 * 15 13 3 17 17 C 1.47011 * 111.00041 * 289.81665 * 16 15 13 18 18 C 1.53106 * 109.25431 * 177.60968 * 17 16 15 19 19 O 1.43008 * 109.25819 * 56.84620 * 18 17 16 20 20 C 1.43019 * 113.74199 * 301.32606 * 19 18 17 21 21 C 1.47010 * 110.99613 * 166.17751 * 16 15 13 22 22 H 1.08996 * 109.54465 * 62.43840 * 21 16 15 23 23 C 1.53003 * 109.51118 * 302.32893 * 21 16 15 24 24 C 1.52993 * 109.47150 * 177.13053 * 23 21 16 25 25 H 1.09003 * 110.75253 * 58.73006 * 24 23 21 26 26 C 1.55309 * 110.84589 * 182.19930 * 24 23 21 27 27 C 1.55497 * 100.69667 * 152.42239 * 26 24 23 28 28 O 1.43643 * 105.17859 * 323.58093 * 27 26 24 29 29 C 1.43240 * 109.97388 * 24.43242 * 28 27 26 30 30 H 1.09001 * 109.47143 * 305.00876 * 1 2 3 31 31 H 1.08991 * 109.47263 * 65.01108 * 1 2 3 32 32 H 1.09002 * 109.46850 * 185.00930 * 1 2 3 33 33 H 1.08995 * 109.47483 * 239.99786 * 2 1 3 34 34 H 1.09009 * 109.47279 * 119.99870 * 2 1 3 35 35 H 1.09001 * 109.47281 * 29.99922 * 4 3 2 36 36 H 1.08996 * 109.47164 * 149.99973 * 4 3 2 37 37 H 0.96997 * 120.00268 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46818 * 56.26233 * 15 13 3 39 39 H 1.08993 * 109.46969 * 296.25601 * 15 13 3 40 40 H 1.08990 * 109.51125 * 57.67604 * 17 16 15 41 41 H 1.08999 * 109.50736 * 297.53782 * 17 16 15 42 42 H 1.09003 * 109.50531 * 296.90636 * 18 17 16 43 43 H 1.09005 * 109.53925 * 176.80089 * 18 17 16 44 44 H 1.09002 * 109.50503 * 298.73952 * 20 19 18 45 45 H 1.09000 * 109.54346 * 178.63106 * 20 19 18 46 46 H 1.09004 * 109.46840 * 57.13060 * 23 21 16 47 47 H 1.09002 * 109.46513 * 297.13365 * 23 21 16 48 48 H 1.09006 * 111.12493 * 270.44313 * 26 24 23 49 49 H 1.08992 * 111.12595 * 34.60442 * 26 24 23 50 50 H 1.09000 * 110.28446 * 204.65279 * 27 26 24 51 51 H 1.09003 * 110.37575 * 82.55145 * 27 26 24 52 52 H 1.08998 * 109.83103 * 238.77882 * 29 28 27 53 53 H 1.09000 * 109.90497 * 117.84871 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1746 2.1029 -1.2653 5 6 3.5641 1.8780 -1.8036 6 1 4.2610 1.2591 -1.2579 7 6 3.9454 2.4616 -2.9932 8 7 3.0967 3.2148 -3.6579 9 14 5.6676 2.1823 -3.6608 10 1 5.8805 0.7305 -3.8890 11 1 5.8259 2.9139 -4.9433 12 1 6.6653 2.6810 -2.6805 13 6 2.3238 1.9880 1.1640 14 8 2.6357 3.1600 1.1733 15 6 2.2780 1.2102 2.4540 16 7 2.7359 2.0648 3.5576 17 6 4.1794 2.3249 3.4584 18 6 4.6019 3.2650 4.5906 19 8 4.2416 2.6831 5.8462 20 6 2.8425 2.4170 5.9772 21 6 2.4022 1.4683 4.8591 22 1 2.9189 0.5146 4.9664 23 6 0.8913 1.2431 4.9457 24 6 0.5530 0.5570 6.2707 25 1 0.8861 1.1612 7.1146 26 6 -0.9689 0.2630 6.3680 27 6 -0.9640 -0.9758 7.3080 28 8 0.2044 -1.7246 6.9371 29 6 1.1693 -0.8571 6.3302 30 1 -0.3633 0.5896 0.8417 31 1 -0.3633 0.4341 -0.9314 32 1 -0.3633 -1.0238 0.0897 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.4424 1.7369 -1.9851 36 1 2.0180 3.1684 -1.0976 37 1 3.3650 3.6257 -4.4946 38 1 2.9277 0.3384 2.3758 39 1 1.2555 0.8853 2.6461 40 1 4.4004 2.7898 2.4978 41 1 4.7252 1.3852 3.5429 42 1 4.0964 4.2238 4.4753 43 1 5.6809 3.4159 4.5556 44 1 2.2858 3.3511 5.9022 45 1 2.6483 1.9542 6.9448 46 1 0.5700 0.6118 4.1172 47 1 0.3773 2.2028 4.8918 48 1 -1.5027 1.1000 6.8181 49 1 -1.3842 0.0141 5.3915 50 1 -1.8620 -1.5732 7.1505 51 1 -0.8971 -0.6616 8.3496 52 1 1.3963 -1.2043 5.3223 53 1 2.0801 -0.8387 6.9287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933668638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:08 Heat of formation + Delta-G solvation = -141.081192 kcal Electronic energy + Delta-G solvation = -31814.272439 eV Core-core repulsion = 27685.192441 eV Total energy + Delta-G solvation = -4129.079998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47578 -40.45206 -39.84651 -37.15261 -36.74581 -35.11298 -34.86619 -32.13611 -31.64450 -30.82697 -30.03419 -28.78096 -27.31975 -26.23871 -24.62561 -24.25513 -23.80916 -23.10409 -21.70282 -20.72111 -19.86313 -18.61980 -18.19840 -17.76781 -17.57918 -17.27265 -16.99248 -16.83022 -16.46953 -16.18040 -15.77441 -15.62785 -15.48159 -15.31259 -14.75527 -14.66520 -14.57635 -14.36217 -14.09417 -14.00855 -13.87531 -13.51410 -13.35379 -13.26086 -13.11491 -12.78409 -12.67195 -12.59420 -12.49130 -12.34674 -12.28249 -12.15421 -11.95196 -11.80268 -11.72015 -11.68773 -11.51061 -11.34506 -10.74003 -10.65040 -10.45096 -10.42414 -9.40511 -9.36585 -8.22903 -6.38253 1.35236 1.39112 1.46479 1.85630 2.17075 2.38279 2.77543 2.86127 3.03037 3.06379 3.48526 3.63699 3.65217 3.83492 3.97359 3.99503 4.03532 4.09927 4.13907 4.21418 4.25209 4.28696 4.35256 4.38365 4.42863 4.47183 4.55391 4.62014 4.70038 4.77224 4.80631 4.82877 4.87448 4.88416 4.94124 4.95094 4.98987 5.03946 5.05955 5.06405 5.21952 5.23267 5.33830 5.37646 5.57416 5.76087 5.88241 5.97516 6.06557 6.09918 6.14475 6.70217 6.83600 7.28314 7.53745 8.83798 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013655 B = 0.003034 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.047172 B = 9226.175955 C =10561.672000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.047 3.953 16 N -0.528 5.528 17 C 0.022 3.978 18 C 0.072 3.928 19 O -0.396 6.396 20 C 0.066 3.934 21 C 0.051 3.949 22 H 0.056 0.944 23 C -0.098 4.098 24 C -0.115 4.115 25 H 0.100 0.900 26 C -0.147 4.147 27 C 0.044 3.956 28 O -0.412 6.412 29 C 0.051 3.949 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.019 0.981 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.111 0.889 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.069 0.931 52 H 0.067 0.933 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -9.593 22.899 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.084 4.084 16 N -0.254 5.254 17 C -0.106 4.106 18 C -0.004 4.004 19 O -0.314 6.314 20 C -0.011 4.011 21 C -0.057 4.057 22 H 0.074 0.926 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.119 0.881 26 C -0.184 4.184 27 C -0.032 4.032 28 O -0.332 6.332 29 C -0.026 4.026 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.037 0.963 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.087 0.913 52 H 0.085 0.915 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.150 -8.693 22.869 25.489 hybrid contribution 1.099 -0.116 -1.407 1.789 sum -6.052 -8.809 21.462 23.976 Atomic orbital electron populations 1.22133 0.94590 1.03468 1.01593 1.21731 0.95362 0.81526 1.03700 1.48272 1.64077 1.15042 1.06476 1.18627 0.95471 0.91117 0.80365 1.21683 0.99210 1.30873 1.06416 0.92897 1.25851 1.01781 0.94461 0.96979 1.70046 1.37245 1.32995 1.16512 0.85495 0.79094 0.78961 0.77440 1.18509 1.20405 1.20224 1.21099 0.76833 0.87527 0.85846 1.90618 1.49259 1.18569 1.87245 1.22079 1.04224 0.93850 0.88221 1.61766 1.15411 1.46519 1.01686 1.22747 0.87780 0.99521 1.00597 1.22599 1.01305 0.94854 0.81690 1.87942 1.25283 1.82559 1.35654 1.22932 0.81254 0.98388 0.98509 1.22445 0.97582 0.96988 0.88639 0.92594 1.21599 0.93017 1.01848 0.97072 1.22731 0.96078 0.95967 0.98573 0.88149 1.23413 0.95340 0.98699 1.00992 1.23635 0.88304 0.92711 0.98534 1.88381 1.28706 1.35539 1.80562 1.23307 0.92026 0.89114 0.98125 0.92405 0.94299 0.88520 0.91217 0.88305 0.96336 0.98637 0.92415 0.90800 0.85204 0.91569 0.93913 0.92984 0.87056 0.92436 0.85974 0.90624 0.90328 0.88159 0.90176 0.89074 0.91282 0.91466 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.97 6.07 86.38 0.52 3.49 16 3 N -0.61 -25.46 2.46 -826.16 -2.03 -27.49 16 4 C 0.27 14.41 5.22 85.63 0.45 14.86 16 5 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 9 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.50 20.50 7.30 87.66 0.64 21.14 16 14 O -0.58 -29.67 14.41 -3.02 -0.04 -29.71 16 15 C 0.05 1.30 3.74 85.56 0.32 1.62 16 16 N -0.53 -14.61 4.18 -874.54 -3.65 -18.27 16 17 C 0.02 0.65 5.31 86.32 0.46 1.11 16 18 C 0.07 1.87 7.01 72.02 0.50 2.38 16 19 O -0.40 -9.57 10.83 -148.98 -1.61 -11.19 16 20 C 0.07 1.24 5.94 72.02 0.43 1.67 16 21 C 0.05 0.99 1.95 44.93 0.09 1.08 16 22 H 0.06 1.05 7.28 -2.39 -0.02 1.04 16 23 C -0.10 -1.45 3.93 30.59 0.12 -1.33 16 24 C -0.11 -1.30 2.74 -9.54 -0.03 -1.33 16 25 H 0.10 0.93 6.61 -2.39 -0.02 0.91 16 26 C -0.15 -1.46 6.66 32.25 0.21 -1.24 16 27 C 0.04 0.52 7.79 72.84 0.57 1.09 16 28 O -0.41 -7.47 11.36 -148.98 -1.69 -9.17 16 29 C 0.05 0.73 6.46 72.45 0.47 1.20 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 34 H 0.10 2.24 6.21 -2.38 -0.01 2.22 16 35 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 36 H 0.00 -0.28 7.36 -2.39 -0.02 -0.30 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.07 1.85 7.36 -2.38 -0.02 1.83 16 39 H 0.13 2.85 5.54 -2.39 -0.01 2.84 16 40 H 0.07 2.53 6.36 -2.39 -0.02 2.51 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.12 1.61 6.67 -2.39 -0.02 1.59 16 46 H 0.08 1.11 5.91 -2.39 -0.01 1.10 16 47 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.08 0.84 8.04 -2.39 -0.02 0.82 16 50 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 53 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.71 407.60 0.35 -76.35 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.88 Total: 16.36 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.19 Total: 12.43 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -5.40 Total: -102.01 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -3.35 Total: -50.06 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.71 0.35 -76.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933668638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.726 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds