Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46488 * 109.47039 * 2 1 4 4 C 1.46502 * 120.00229 * 269.99767 * 3 2 1 5 5 C 1.50697 * 109.47399 * 270.00246 * 4 3 2 6 6 H 1.08002 * 119.99936 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00561 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00861 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99579 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46803 * 90.00201 * 9 7 5 11 11 H 1.48501 * 109.47120 * 210.00110 * 9 7 5 12 12 H 1.48493 * 109.47073 * 330.00092 * 9 7 5 13 13 C 1.34782 * 120.00192 * 90.00244 * 3 2 1 14 14 O 1.21277 * 120.00033 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99827 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47304 * 180.02562 * 15 13 3 17 17 C 1.47013 * 110.99701 * 72.56150 * 16 15 13 18 18 C 1.53104 * 109.25634 * 182.39361 * 17 16 15 19 19 O 1.43019 * 109.25751 * 303.15382 * 18 17 16 20 20 C 1.43019 * 113.73605 * 58.66867 * 19 18 17 21 21 C 1.47010 * 110.99964 * 196.19854 * 16 15 13 22 22 H 1.09000 * 109.50809 * 297.58429 * 21 16 15 23 23 C 1.53003 * 109.50513 * 57.67603 * 21 16 15 24 24 C 1.52998 * 109.47564 * 60.49778 * 23 21 16 25 25 H 1.08998 * 110.35247 * 53.67537 * 24 23 21 26 26 C 1.54946 * 110.31166 * 175.82615 * 24 23 21 27 27 C 1.55304 * 100.97839 * 155.33536 * 26 24 23 28 28 C 1.54434 * 102.23304 * 325.92017 * 27 26 24 29 29 O 1.43246 * 107.60459 * 21.29615 * 28 27 26 30 30 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46731 * 300.00050 * 1 2 3 32 32 H 1.09005 * 109.46849 * 59.99738 * 1 2 3 33 33 H 1.09003 * 109.46677 * 239.99574 * 2 1 3 34 34 H 1.08997 * 109.46615 * 120.00407 * 2 1 3 35 35 H 1.09000 * 109.47109 * 30.00541 * 4 3 2 36 36 H 1.09001 * 109.47079 * 150.00430 * 4 3 2 37 37 H 0.96993 * 120.00632 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.46850 * 59.99629 * 15 13 3 39 39 H 1.09001 * 109.47236 * 300.00502 * 15 13 3 40 40 H 1.08992 * 109.51291 * 302.32692 * 17 16 15 41 41 H 1.09003 * 109.50567 * 62.41988 * 17 16 15 42 42 H 1.08999 * 109.50334 * 63.08664 * 18 17 16 43 43 H 1.08993 * 109.50497 * 183.17632 * 18 17 16 44 44 H 1.09004 * 109.50395 * 181.39487 * 20 19 18 45 45 H 1.08995 * 109.50539 * 61.26728 * 20 19 18 46 46 H 1.09002 * 109.47075 * 300.49418 * 23 21 16 47 47 H 1.09004 * 109.46786 * 180.49970 * 23 21 16 48 48 H 1.08995 * 111.11916 * 273.27819 * 26 24 23 49 49 H 1.08992 * 111.12268 * 37.39946 * 26 24 23 50 50 H 1.08998 * 110.84424 * 84.07940 * 27 26 24 51 51 H 1.08999 * 110.84972 * 207.69563 * 27 26 24 52 52 H 1.08998 * 109.79099 * 261.79969 * 28 27 26 53 53 H 1.08999 * 109.92815 * 140.86921 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2579 9 14 3.0129 3.4352 -3.9292 10 1 3.1165 4.8554 -3.5080 11 1 3.4058 3.3120 -5.3560 12 1 1.6132 2.9693 -3.7592 13 6 2.2431 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3091 2.2064 3.5889 17 6 1.2928 3.2603 3.7215 18 6 1.6932 4.2080 4.8554 19 8 1.8558 3.4577 6.0620 20 6 2.8386 2.4229 5.9685 21 6 2.4498 1.4572 4.8459 22 1 1.5030 0.9758 5.0907 23 6 3.5380 0.3933 4.6876 24 6 4.8697 1.0709 4.3585 25 1 5.1000 1.8349 5.1009 26 6 6.0070 0.0203 4.2971 27 6 7.0228 0.7381 3.3670 28 6 6.0952 1.5083 2.4020 29 8 4.8230 1.6503 3.0449 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.6877 -2.0284 36 1 2.0957 3.1410 -1.1383 37 1 5.7170 2.5724 -4.0841 38 1 2.6212 0.4185 2.5302 39 1 0.9433 1.0124 2.5299 40 1 1.2235 3.8187 2.7880 41 1 0.3272 2.8083 3.9480 42 1 2.6325 4.7004 4.6036 43 1 0.9148 4.9582 4.9946 44 1 2.8883 1.8816 6.9133 45 1 3.8111 2.8635 5.7491 46 1 3.2668 -0.2864 3.8798 47 1 3.6357 -0.1676 5.6171 48 1 6.4339 -0.1544 5.2846 49 1 5.6575 -0.9113 3.8524 50 1 7.6492 1.4262 3.9346 51 1 7.6318 0.0141 2.8257 52 1 5.9802 0.9476 1.4744 53 1 6.5141 2.4920 2.1900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933674978.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -101.130431 kcal Electronic energy + Delta-G solvation = -33285.184799 eV Core-core repulsion = 29157.837195 eV Total energy + Delta-G solvation = -4127.347603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.25966 -38.89286 -38.50097 -35.76041 -35.08507 -33.13553 -32.62345 -31.75850 -30.29858 -29.66332 -29.05678 -27.40437 -26.06047 -24.74251 -22.91318 -22.88911 -21.89268 -21.47002 -21.29862 -19.37349 -18.20512 -17.15882 -16.81473 -16.32719 -16.25485 -15.90106 -15.73651 -15.25230 -14.93708 -14.89975 -14.38138 -14.28731 -14.18544 -13.65427 -13.47078 -13.38158 -13.26580 -13.01762 -12.65590 -12.53891 -12.37885 -12.13783 -11.97108 -11.85845 -11.72166 -11.48665 -11.38879 -11.33488 -11.03006 -10.91163 -10.88411 -10.65959 -10.58716 -10.52122 -10.45692 -10.36213 -10.07913 -9.56846 -9.44753 -8.92941 -8.75459 -8.52373 -7.96404 -7.54530 -6.02498 -3.99332 3.32731 3.38539 3.40899 3.55256 3.67667 3.87885 4.12402 4.22760 4.45136 4.55819 4.64739 4.87999 4.96472 5.01386 5.06609 5.13477 5.23449 5.29371 5.31308 5.34170 5.35262 5.39868 5.45417 5.52796 5.58239 5.62084 5.67573 5.68643 5.74027 5.78413 5.79758 5.82788 5.88107 5.95557 6.01983 6.06409 6.11040 6.19686 6.21111 6.27802 6.43079 6.43743 6.78416 7.01645 7.11048 7.17047 7.27399 7.52175 7.56787 7.70192 8.44988 8.56368 9.02230 9.25372 9.59549 11.11099 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004383 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.896351 B = 6387.049077 C = 7408.472398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 N -0.600 5.600 4 C 0.219 3.781 5 C -0.519 4.519 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.519 3.481 14 O -0.516 6.516 15 C 0.046 3.954 16 N -0.489 5.489 17 C 0.020 3.980 18 C 0.067 3.933 19 O -0.390 6.390 20 C 0.068 3.932 21 C 0.052 3.948 22 H 0.045 0.955 23 C -0.116 4.116 24 C 0.084 3.916 25 H 0.065 0.935 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.050 3.950 29 O -0.331 6.331 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.070 0.930 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 -6.288 18.192 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.334 5.334 4 C 0.099 3.901 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.305 3.695 14 O -0.391 6.391 15 C -0.085 4.085 16 N -0.214 5.214 17 C -0.108 4.108 18 C -0.010 4.010 19 O -0.309 6.309 20 C -0.009 4.009 21 C -0.057 4.057 22 H 0.063 0.937 23 C -0.154 4.154 24 C 0.026 3.974 25 H 0.083 0.917 26 C -0.192 4.192 27 C -0.192 4.192 28 C -0.028 4.028 29 O -0.250 6.250 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.088 0.912 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.944 -5.242 18.003 19.392 hybrid contribution -0.785 -0.212 -0.832 1.163 sum -5.729 -5.454 17.172 18.906 Atomic orbital electron populations 1.22242 0.97114 1.01360 1.02054 1.21356 0.93092 0.84359 1.02710 1.47914 1.65254 1.13193 1.07021 1.19560 0.97106 0.93233 0.80233 1.21335 0.95375 1.32351 1.06718 0.90781 1.24836 0.94918 0.95870 0.97389 1.69890 1.15138 1.45345 1.23549 0.86887 0.81551 0.81704 0.79736 1.20018 1.21239 1.19189 1.20026 0.78140 0.87028 0.84335 1.90626 1.43807 1.17989 1.86683 1.22014 0.99157 0.96583 0.90771 1.61690 1.46127 1.11940 1.01620 1.22851 0.92162 0.94740 1.01031 1.22638 1.01757 0.93150 0.83409 1.87921 1.59990 1.47808 1.35174 1.22752 0.92255 0.88537 0.97323 1.22254 0.97740 0.94504 0.91198 0.93744 1.21875 0.94366 0.97118 1.02053 1.22844 0.93264 0.93311 0.87947 0.91688 1.23335 0.96453 0.99276 1.00126 1.23120 0.98460 0.99650 0.97992 1.23096 0.83995 0.99829 0.95832 1.88842 1.30275 1.79578 1.26280 0.92170 0.93233 0.92267 0.89978 0.91864 0.95696 0.94863 0.92749 0.87982 0.93679 0.88293 0.95215 0.91856 0.88887 0.89024 0.91755 0.90600 0.90213 0.90675 0.90648 0.91134 0.90493 0.91223 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 5 C -0.52 -14.94 9.94 -34.44 -0.34 -15.28 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.52 10.70 7.37 -10.98 -0.08 10.62 16 14 O -0.52 -12.78 14.46 5.56 0.08 -12.70 16 15 C 0.05 0.71 2.97 -4.98 -0.01 0.70 16 16 N -0.49 -7.39 2.77 -227.77 -0.63 -8.02 16 17 C 0.02 0.30 5.31 -3.71 -0.02 0.28 16 18 C 0.07 0.89 7.01 37.21 0.26 1.15 16 19 O -0.39 -5.21 10.83 -35.23 -0.38 -5.59 16 20 C 0.07 0.78 6.03 37.21 0.22 1.01 16 21 C 0.05 0.62 2.28 -67.60 -0.15 0.47 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 23 C -0.12 -1.22 4.50 -26.73 -0.12 -1.34 16 24 C 0.08 1.03 3.16 -25.71 -0.08 0.95 16 25 H 0.07 0.78 6.10 -51.93 -0.32 0.46 16 26 C -0.15 -1.60 6.57 -24.48 -0.16 -1.76 16 27 C -0.15 -1.86 7.02 -24.76 -0.17 -2.03 16 28 C 0.05 0.82 7.80 37.91 0.30 1.11 16 29 O -0.33 -5.62 8.38 -35.23 -0.30 -5.91 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 35 H 0.03 0.59 7.13 -51.93 -0.37 0.22 16 36 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.10 1.53 4.49 -51.93 -0.23 1.30 16 39 H 0.05 0.63 7.09 -51.93 -0.37 0.26 16 40 H 0.10 1.70 6.45 -51.93 -0.33 1.36 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.79 6.14 -51.93 -0.32 0.47 16 46 H 0.08 0.83 6.03 -51.93 -0.31 0.52 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 52 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 53 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 399.14 15.07 6.01 6.01 Total: -1.00 -34.59 399.14 -8.91 -43.50 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -9.24 Total: 2.24 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.13 Total: 3.17 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.29 Total: -47.92 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.60 Total: -24.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.59 -8.91 -43.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933674978.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.633 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds