Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00501 * 2 1 4 4 C 1.52997 * 109.47257 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47128 * 64.99872 * 4 3 2 6 6 C 1.42908 * 113.99643 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47446 * 329.99756 * 6 5 4 8 8 C 1.52999 * 109.46991 * 90.00081 * 6 5 4 9 9 C 1.50697 * 109.46724 * 209.99933 * 6 5 4 10 10 O 1.21282 * 120.00339 * 350.72467 * 9 6 5 11 11 N 1.34775 * 120.00326 * 170.72663 * 9 6 5 12 12 C 1.48125 * 127.83648 * 354.86311 * 11 9 6 13 13 C 1.54334 * 104.69279 * 140.24240 * 12 11 9 14 14 H 1.09003 * 111.85211 * 262.43760 * 13 12 11 15 15 C 1.54156 * 108.86184 * 137.43914 * 13 12 11 16 16 C 1.54849 * 104.32948 * 271.23018 * 15 13 12 17 17 C 1.55776 * 102.31019 * 321.13229 * 16 15 13 18 18 C 1.54163 * 103.87901 * 39.34866 * 17 16 15 19 19 C 1.53005 * 111.82018 * 212.52863 * 18 17 16 20 20 N 1.46497 * 109.47016 * 299.26050 * 19 18 17 21 21 C 1.36944 * 119.99515 * 179.97438 * 20 19 18 22 22 H 1.07988 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99297 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99289 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47362 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46720 * 120.00074 * 25 23 21 28 28 H 1.48509 * 109.46821 * 239.99709 * 25 23 21 29 29 C 1.48114 * 127.85205 * 174.83914 * 11 9 6 30 30 H 1.09004 * 109.46796 * 59.99484 * 1 2 3 31 31 H 1.08996 * 109.47726 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46747 * 300.00202 * 1 2 3 33 33 H 1.09005 * 109.47274 * 59.99958 * 3 2 1 34 34 H 1.09005 * 109.46984 * 300.00124 * 3 2 1 35 35 H 1.09007 * 109.46834 * 304.99593 * 4 3 2 36 36 H 1.09005 * 109.47000 * 184.99958 * 4 3 2 37 37 H 1.09002 * 109.47216 * 65.28751 * 8 6 5 38 38 H 1.09005 * 109.47164 * 185.28568 * 8 6 5 39 39 H 1.08994 * 109.47253 * 305.28733 * 8 6 5 40 40 H 1.08997 * 110.39257 * 21.43838 * 12 11 9 41 41 H 1.08996 * 110.39108 * 259.03982 * 12 11 9 42 42 H 1.09002 * 110.46442 * 29.93562 * 15 13 12 43 43 H 1.09002 * 110.46323 * 152.51903 * 15 13 12 44 44 H 1.08996 * 110.76058 * 80.12083 * 16 15 13 45 45 H 1.08994 * 110.75909 * 203.31905 * 16 15 13 46 46 H 1.08999 * 111.74406 * 280.25308 * 17 16 15 47 47 H 1.08996 * 109.59559 * 157.39677 * 17 16 15 48 48 H 1.09001 * 109.46926 * 59.26300 * 19 18 17 49 49 H 1.08999 * 109.46912 * 179.25556 * 19 18 17 50 50 H 0.96997 * 120.00174 * 0.02562 * 20 19 18 51 51 H 0.97006 * 119.99640 * 180.02562 * 24 23 21 52 52 H 1.08996 * 110.39322 * 100.95814 * 29 11 9 53 53 H 1.09001 * 110.38930 * 338.57179 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 8 3.9648 0.5794 -1.2219 6 6 5.3812 0.4188 -1.3245 7 1 5.8782 1.2102 -0.7635 8 6 5.7829 -0.9419 -0.7518 9 6 5.7918 0.4955 -2.7724 10 8 4.9472 0.5011 -3.6428 11 7 7.0976 0.5579 -3.1002 12 6 8.2592 0.6671 -2.1877 13 6 9.3312 -0.2547 -2.8066 14 1 9.3459 -1.2357 -2.3318 15 6 10.6980 0.4551 -2.7392 16 6 10.7726 1.2687 -4.0547 17 6 10.1270 0.2946 -5.0847 18 6 8.9587 -0.3441 -4.3077 19 6 8.7042 -1.7871 -4.7481 20 7 8.3573 -1.8093 -6.1713 21 6 8.0858 -2.9998 -6.7913 22 1 8.1269 -3.9221 -6.2311 23 6 7.7577 -3.0208 -8.1400 24 7 7.7081 -1.8968 -8.8228 25 14 7.3866 -4.6447 -8.9855 26 1 7.5104 -5.7531 -8.0050 27 1 6.0047 -4.6155 -9.5285 28 1 8.3502 -4.8564 -10.0955 29 6 7.6969 0.5323 -4.4544 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8514 0.5680 0.8410 36 1 3.9786 2.1763 0.0889 37 1 5.3617 -1.7349 -1.3698 38 1 6.8697 -1.0262 -0.7436 39 1 5.4036 -1.0342 0.2658 40 1 7.9917 0.3215 -1.1892 41 1 8.6181 1.6957 -2.1512 42 1 10.7397 1.1205 -1.8769 43 1 11.5054 -0.2760 -2.6971 44 1 10.2042 2.1947 -3.9689 45 1 11.8086 1.4763 -4.3223 46 1 10.8304 -0.4709 -5.4123 47 1 9.7531 0.8602 -5.9381 48 1 9.6033 -2.3810 -4.5839 49 1 7.8819 -2.2046 -4.1671 50 1 8.3208 -0.9809 -6.6746 51 1 7.4784 -1.9116 -9.7652 52 1 7.9687 1.5399 -4.7686 53 1 7.0046 0.0849 -5.1677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112539286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -136.235987 kcal Electronic energy + Delta-G solvation = -31366.027261 eV Core-core repulsion = 27237.157366 eV Total energy + Delta-G solvation = -4128.869894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82576 -40.27440 -39.12255 -38.04356 -36.51270 -35.63624 -33.56646 -32.95836 -31.11143 -30.71487 -30.16654 -27.53255 -27.18958 -26.54173 -25.76352 -24.64717 -23.58182 -23.30626 -21.11592 -20.55326 -19.86160 -19.10993 -18.38639 -17.81528 -17.63602 -17.27219 -16.81211 -16.64106 -16.34831 -16.14013 -15.87162 -15.71800 -15.43765 -15.24682 -15.04611 -14.78691 -14.48966 -14.23794 -13.91077 -13.68658 -13.49855 -13.44620 -13.19968 -13.12542 -13.02905 -12.86927 -12.71800 -12.69056 -12.33261 -12.15249 -12.12899 -11.96386 -11.72922 -11.68910 -11.65685 -11.51026 -11.46247 -11.34118 -10.98987 -10.94599 -10.67154 -10.48630 -9.75484 -9.01856 -7.98309 -5.26439 1.41379 1.44138 1.50861 1.53426 1.67208 2.52250 2.79316 2.86225 3.31165 3.34964 3.46989 3.65267 3.71043 3.84169 3.97529 4.12761 4.16724 4.21184 4.21578 4.23224 4.25590 4.40507 4.41183 4.46916 4.47748 4.52156 4.54130 4.56232 4.61161 4.71007 4.75658 4.77922 4.79331 4.81228 4.83854 4.91655 4.98063 5.06667 5.12682 5.20281 5.23684 5.32196 5.33287 5.39980 5.43584 5.53603 5.57355 6.08117 6.24119 6.25838 6.56765 7.11846 7.30244 8.06939 8.29955 9.25552 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.003212 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.127896 B = 8714.002766 C =11063.685766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.057 3.943 4 C 0.053 3.947 5 O -0.391 6.391 6 C 0.086 3.914 7 H 0.127 0.873 8 C -0.164 4.164 9 C 0.519 3.481 10 O -0.587 6.587 11 N -0.617 5.617 12 C 0.099 3.901 13 C -0.092 4.092 14 H 0.094 0.906 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.070 4.070 19 C 0.173 3.827 20 N -0.740 5.740 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.297 1.297 28 H -0.287 1.287 29 C 0.121 3.879 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.027 0.973 49 H -0.002 1.002 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.079 0.921 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 11.845 27.927 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.019 4.019 4 C -0.023 4.023 5 O -0.310 6.310 6 C 0.025 3.975 7 H 0.145 0.855 8 C -0.221 4.221 9 C 0.308 3.692 10 O -0.467 6.467 11 N -0.351 5.351 12 C -0.022 4.022 13 C -0.112 4.112 14 H 0.113 0.887 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.144 4.144 18 C -0.072 4.072 19 C 0.047 3.953 20 N -0.382 5.382 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.191 1.191 27 H -0.224 1.224 28 H -0.214 1.214 29 C -0.002 4.002 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.016 0.984 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.097 0.903 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.209 11.434 27.386 29.677 hybrid contribution -0.908 -0.596 -1.765 2.073 sum -0.700 10.838 25.620 27.827 Atomic orbital electron populations 1.22891 0.79777 1.03547 1.00788 1.87920 1.21281 1.28811 1.95580 1.22755 0.92360 0.84992 1.01838 1.22970 0.93836 0.98897 0.86615 1.88124 1.20429 1.82378 1.40059 1.21898 0.83684 1.01192 0.90726 0.85541 1.22249 1.03396 0.94267 1.02222 1.20987 0.80693 0.75420 0.92081 1.90726 1.51515 1.51528 1.52901 1.48999 1.05020 1.71770 1.09261 1.23059 0.83456 1.01456 0.94202 1.22758 0.96275 1.00061 0.92099 0.88733 1.22335 0.94499 0.98955 0.98193 1.22658 1.01007 0.97392 0.94285 1.22428 0.95913 0.98330 0.97778 1.22162 0.94247 0.93449 0.97316 1.20691 0.95851 0.94545 0.84228 1.42525 1.83452 1.05943 1.06320 1.19636 1.37710 0.87600 0.92693 0.91063 1.25575 1.03429 1.00312 0.97547 1.69827 1.57016 1.26799 1.08280 0.85081 0.76808 0.79520 0.78415 1.19058 1.22426 1.21383 1.22299 0.93961 0.99359 0.84615 0.94286 0.89242 0.91880 0.88271 0.93696 0.90501 0.88801 0.94636 0.88510 0.88576 0.87026 0.87851 0.87890 0.90699 0.90569 0.90274 0.92256 0.93719 0.95469 0.98412 0.79379 0.94042 0.90327 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -9.91 10.67 -144.33 -1.54 -11.44 16 3 C 0.06 1.02 6.32 71.98 0.45 1.47 16 4 C 0.05 0.91 6.13 71.98 0.44 1.35 16 5 O -0.39 -11.24 9.50 -125.66 -1.19 -12.44 16 6 C 0.09 2.03 2.39 29.85 0.07 2.10 16 7 H 0.13 1.74 7.63 -2.39 -0.02 1.73 16 8 C -0.16 -3.28 9.34 71.98 0.67 -2.61 16 9 C 0.52 18.12 7.23 87.66 0.63 18.75 16 10 O -0.59 -28.68 16.83 15.84 0.27 -28.41 16 11 N -0.62 -18.20 3.31 -808.34 -2.68 -20.88 16 12 C 0.10 1.66 6.03 86.52 0.52 2.18 16 13 C -0.09 -1.84 3.58 -9.29 -0.03 -1.87 16 14 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 15 C -0.10 -1.43 6.08 31.62 0.19 -1.24 16 16 C -0.12 -2.12 6.86 32.18 0.22 -1.90 16 17 C -0.11 -3.12 5.19 31.95 0.17 -2.96 16 18 C -0.07 -2.22 0.62 -50.68 -0.03 -2.25 16 19 C 0.17 7.35 5.14 86.38 0.44 7.80 16 20 N -0.74 -40.18 4.93 -343.45 -1.69 -41.87 16 21 C -0.24 -14.63 9.99 84.03 0.84 -13.79 16 22 H 0.07 4.13 7.83 -2.92 -0.02 4.11 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -62.79 13.06 21.65 0.28 -62.50 16 25 Si 0.97 49.16 29.55 68.60 2.03 51.19 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 C 0.12 4.32 5.79 86.52 0.50 4.82 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 1.04 7.78 -2.38 -0.02 1.02 16 36 H 0.09 1.02 8.09 -2.38 -0.02 1.00 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.43 6.04 -2.38 -0.01 1.42 16 39 H 0.10 1.42 7.78 -2.39 -0.02 1.40 16 40 H 0.11 1.14 5.46 -2.39 -0.01 1.13 16 41 H 0.10 1.22 7.61 -2.39 -0.02 1.20 16 42 H 0.10 0.78 7.74 -2.39 -0.02 0.76 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.94 7.96 -2.39 -0.02 1.92 16 47 H 0.04 1.49 7.79 -2.39 -0.02 1.47 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.37 21.58 6.91 -92.71 -0.64 20.94 16 51 H 0.25 15.69 8.31 -92.70 -0.77 14.92 16 52 H 0.08 2.56 7.67 -2.39 -0.02 2.54 16 53 H 0.03 1.66 7.04 -2.39 -0.02 1.64 16 Total: -1.00 -90.36 415.44 2.52 -87.84 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.24 Total: 29.19 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.81 Total: 9.33 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -4.09 Total: -125.25 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.47 Total: -52.30 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -90.36 2.52 -87.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112539286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.400 kcal (2) G-P(sol) polarization free energy of solvation -90.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds