Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00342 * 2 1 4 4 O 1.42900 * 109.47299 * 134.99555 * 3 2 1 5 5 C 1.42900 * 114.00182 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46990 * 330.00077 * 5 4 3 7 7 C 1.53003 * 109.47034 * 90.00147 * 5 4 3 8 8 C 1.50703 * 109.47200 * 210.00054 * 5 4 3 9 9 O 1.21275 * 120.00131 * 355.00183 * 8 5 4 10 10 N 1.34777 * 119.99972 * 175.27565 * 8 5 4 11 11 C 1.46497 * 120.00236 * 174.71084 * 10 8 5 12 12 C 1.53002 * 109.46112 * 303.03592 * 11 10 8 13 13 C 1.53002 * 109.46562 * 302.94672 * 12 11 10 14 14 O 1.42903 * 109.46732 * 184.42430 * 13 12 11 15 15 C 1.42900 * 113.99783 * 179.97438 * 14 13 12 16 16 C 1.53041 * 109.46340 * 183.07243 * 11 10 8 17 17 C 1.53191 * 109.31367 * 301.34656 * 16 11 10 18 18 N 1.46931 * 108.77347 * 305.36598 * 17 16 11 19 19 C 1.36941 * 120.62878 * 233.58555 * 18 17 16 20 20 H 1.08007 * 119.99595 * 31.78555 * 19 18 17 21 21 C 1.38810 * 120.00476 * 211.78728 * 19 18 17 22 22 N 1.31620 * 119.99411 * 10.78969 * 21 19 18 23 23 Si 1.86794 * 120.00327 * 190.79012 * 21 19 18 24 24 H 1.48499 * 109.47152 * 59.99759 * 23 21 19 25 25 H 1.48501 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46755 * 299.99507 * 23 21 19 27 27 C 1.46920 * 118.74294 * 53.60514 * 18 17 16 28 28 C 1.53051 * 109.45792 * 63.00519 * 11 10 8 29 29 H 1.07993 * 120.00166 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99550 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99550 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47529 * 14.99865 * 3 2 1 33 33 H 1.08996 * 109.47466 * 254.99570 * 3 2 1 34 34 H 1.09000 * 109.46567 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46817 * 300.00365 * 7 5 4 36 36 H 1.09000 * 109.46788 * 60.00273 * 7 5 4 37 37 H 0.97001 * 120.00063 * 354.70702 * 10 8 5 38 38 H 1.08992 * 109.47192 * 62.94246 * 12 11 10 39 39 H 1.08995 * 109.47432 * 182.94788 * 12 11 10 40 40 H 1.08997 * 109.47185 * 304.42154 * 13 12 11 41 41 H 1.09006 * 109.47310 * 64.42526 * 13 12 11 42 42 H 1.09000 * 109.47738 * 300.00136 * 15 14 13 43 43 H 1.09005 * 109.46992 * 60.00169 * 15 14 13 44 44 H 1.09001 * 109.46977 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.49557 * 61.29231 * 16 11 10 46 46 H 1.09000 * 109.49949 * 181.39264 * 16 11 10 47 47 H 1.08997 * 109.59175 * 185.57576 * 17 16 11 48 48 H 1.09003 * 109.58939 * 65.14876 * 17 16 11 49 49 H 0.97004 * 119.99877 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.58847 * 186.60150 * 27 18 17 51 51 H 1.09007 * 109.58263 * 66.18136 * 27 18 17 52 52 H 1.09002 * 109.49025 * 178.60823 * 28 11 10 53 53 H 1.09002 * 109.49446 * 298.70347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.9139 2.9308 0.0615 7 6 3.3043 3.3714 2.0803 8 6 5.3207 2.0851 1.4254 9 8 5.6060 0.9405 1.7068 10 7 6.2653 3.0454 1.4697 11 6 7.6082 2.7298 1.9625 12 6 7.5107 2.1622 3.3801 13 6 6.7938 3.1675 4.2836 14 8 6.7935 2.6837 5.6282 15 6 6.1451 3.5532 6.5586 16 6 8.4571 4.0030 1.9807 17 6 8.5242 4.5875 0.5663 18 7 9.0130 3.5494 -0.3516 19 6 10.0903 3.7865 -1.1629 20 1 10.8798 4.4458 -0.8333 21 6 10.1679 3.1797 -2.4089 22 7 9.1212 2.5513 -2.9010 23 14 11.7573 3.2548 -3.3872 24 1 12.8485 2.6159 -2.6085 25 1 11.5807 2.5360 -4.6746 26 1 12.1061 4.6730 -3.6566 27 6 8.3236 2.2524 -0.3827 28 6 8.2587 1.6941 1.0423 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3857 2.1161 0.2660 33 1 2.4757 1.4867 -0.9926 34 1 3.9004 4.2820 2.1404 35 1 2.2829 3.6242 1.7958 36 1 3.2990 2.8753 3.0508 37 1 6.0559 3.9456 1.1752 38 1 6.9499 1.2278 3.3595 39 1 8.5126 1.9762 3.7668 40 1 7.3108 4.1261 4.2425 41 1 5.7661 3.2940 3.9427 42 1 6.6491 4.5197 6.5647 43 1 5.1041 3.6881 6.2651 44 1 6.1881 3.1152 7.5558 45 1 8.0057 4.7316 2.6543 46 1 9.4638 3.7644 2.3239 47 1 9.2069 5.4371 0.5539 48 1 7.5302 4.9103 0.2567 49 1 9.1752 2.1275 -3.7719 50 1 8.8739 1.5612 -1.0212 51 1 7.3132 2.3848 -0.7697 52 1 9.2672 1.4772 1.3944 53 1 7.6661 0.7792 1.0481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151415477.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -83.195143 kcal Electronic energy + Delta-G solvation = -32162.750352 eV Core-core repulsion = 28036.180482 eV Total energy + Delta-G solvation = -4126.569871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43307 -38.59394 -37.63714 -36.96032 -34.52791 -34.16714 -32.49201 -31.51220 -30.66019 -30.03801 -28.80129 -26.54832 -26.33920 -24.90953 -24.10034 -23.13322 -22.07578 -20.83860 -20.33524 -19.98035 -18.68146 -17.31306 -17.11951 -16.70884 -16.31300 -15.97168 -15.75691 -15.11146 -14.96837 -14.85057 -14.78397 -14.27766 -13.87857 -13.75213 -13.50244 -13.42275 -13.16082 -12.99262 -12.93135 -12.75017 -12.42215 -12.31224 -12.14767 -11.69454 -11.54852 -11.47856 -11.41187 -11.06106 -11.03447 -10.99839 -10.83033 -10.71609 -10.39329 -10.26091 -10.19495 -9.99258 -9.73994 -9.66427 -9.46545 -9.43461 -8.93310 -8.57457 -8.46680 -6.61145 -5.78098 -3.27084 1.95955 2.93895 3.10724 3.37540 3.43526 3.44157 3.80024 3.97769 4.48177 4.68333 4.82373 4.85770 4.91741 5.03203 5.09038 5.16839 5.24302 5.24729 5.28086 5.33022 5.36037 5.37118 5.43049 5.46405 5.51216 5.55399 5.56089 5.63948 5.69453 5.79656 5.92174 6.01164 6.13944 6.19628 6.37023 6.38524 6.41843 6.45022 6.53735 6.64624 6.70325 6.81092 6.90188 7.02967 7.10353 7.21067 7.43444 7.73384 7.79498 7.89024 8.48000 8.59147 9.22475 9.83723 10.41801 11.29310 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003968 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.683988 B = 7054.954174 C = 9703.013980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.143 4.143 3 C 0.084 3.916 4 O -0.351 6.351 5 C 0.068 3.932 6 H 0.086 0.914 7 C -0.168 4.168 8 C 0.518 3.482 9 O -0.513 6.513 10 N -0.711 5.711 11 C 0.197 3.803 12 C -0.130 4.130 13 C 0.066 3.934 14 O -0.393 6.393 15 C 0.033 3.967 16 C -0.140 4.140 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.181 3.819 28 C -0.151 4.151 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.013 0.987 49 H 0.254 0.746 50 H 0.085 0.915 51 H 0.016 0.984 52 H 0.060 0.940 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 3.393 11.681 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.161 4.161 3 C 0.008 3.992 4 O -0.269 6.269 5 C 0.007 3.993 6 H 0.103 0.897 7 C -0.225 4.225 8 C 0.302 3.698 9 O -0.388 6.388 10 N -0.365 5.365 11 C 0.112 3.888 12 C -0.168 4.168 13 C -0.010 4.010 14 O -0.311 6.311 15 C -0.064 4.064 16 C -0.180 4.180 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.055 3.945 28 C -0.191 4.191 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.064 0.936 50 H 0.103 0.897 51 H 0.034 0.966 52 H 0.079 0.921 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.911 2.131 11.877 18.415 hybrid contribution 0.421 1.019 -0.981 1.476 sum -13.490 3.150 10.896 17.625 Atomic orbital electron populations 1.23791 0.95482 1.02108 1.00956 1.22762 0.95550 0.98400 0.99387 1.21663 0.89014 0.95874 0.92681 1.88071 1.43790 1.35243 1.59821 1.21930 0.90156 0.87187 1.00058 0.89652 1.22216 1.01552 0.98940 0.99834 1.20104 0.85938 0.85725 0.77996 1.90654 1.81438 1.19630 1.47075 1.46030 1.11362 1.12790 1.66300 1.20195 0.80871 0.96217 0.91565 1.21979 1.01746 1.00065 0.93050 1.22609 0.99507 0.97343 0.81551 1.87890 1.78542 1.46768 1.17949 1.22686 0.96101 0.94171 0.93438 1.22420 0.99859 0.95634 1.00087 1.20865 0.96741 0.92168 0.88250 1.44021 1.34319 1.08823 1.44159 1.19104 0.96785 1.27748 0.94942 0.91985 1.25163 0.97029 1.00853 0.96205 1.69973 1.27822 1.38858 1.17974 0.86359 0.83304 0.77672 0.79294 1.20961 1.21636 1.20929 1.20675 0.95593 0.87512 0.90705 1.22605 0.99529 0.98030 0.98905 0.87851 0.88558 0.86342 0.92792 0.91912 0.90987 0.91505 0.91262 0.76846 0.89191 0.90641 0.93301 0.93784 0.94315 0.94420 0.89974 0.92518 0.90488 0.92585 0.96925 0.93581 0.89720 0.96561 0.92118 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.31 29.01 0.42 -1.18 16 2 C -0.14 -1.53 9.89 -36.03 -0.36 -1.89 16 3 C 0.08 0.94 6.16 36.00 0.22 1.17 16 4 O -0.35 -5.14 9.51 -55.09 -0.52 -5.66 16 5 C 0.07 0.89 3.13 -27.88 -0.09 0.80 16 6 H 0.09 0.99 7.79 -51.93 -0.40 0.59 16 7 C -0.17 -1.64 9.48 37.16 0.35 -1.28 16 8 C 0.52 8.39 6.36 -10.98 -0.07 8.32 16 9 O -0.51 -10.31 12.78 -14.30 -0.18 -10.50 16 10 N -0.71 -10.61 3.31 -47.56 -0.16 -10.77 16 11 C 0.20 3.23 0.35 -131.77 -0.05 3.18 16 12 C -0.13 -2.04 4.32 -26.73 -0.12 -2.16 16 13 C 0.07 0.89 5.50 37.16 0.20 1.10 16 14 O -0.39 -5.58 10.70 -35.23 -0.38 -5.96 16 15 C 0.03 0.33 11.01 101.05 1.11 1.44 16 16 C -0.14 -2.20 4.72 -26.61 -0.13 -2.33 16 17 C 0.15 2.78 6.24 -3.71 -0.02 2.76 16 18 N -0.59 -14.15 2.98 -172.32 -0.51 -14.67 16 19 C -0.26 -6.85 9.58 -15.06 -0.14 -6.99 16 20 H 0.06 1.63 7.85 -52.48 -0.41 1.22 16 21 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 22 N -0.90 -25.95 11.09 55.49 0.62 -25.34 16 23 Si 0.90 21.54 29.57 -169.99 -5.03 16.52 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.18 4.31 4.99 -3.72 -0.02 4.29 16 28 C -0.15 -3.04 4.71 -26.61 -0.13 -3.17 16 29 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.10 0.70 7.90 -52.49 -0.41 0.29 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.05 0.49 7.59 -51.93 -0.39 0.10 16 33 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 5.16 7.13 -40.82 -0.29 4.87 16 38 H 0.09 1.64 6.21 -51.93 -0.32 1.31 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.60 6.26 -51.93 -0.33 0.28 16 41 H 0.04 0.58 7.47 -51.93 -0.39 0.19 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.01 0.24 6.88 -51.93 -0.36 -0.12 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.08 2.33 6.14 -51.93 -0.32 2.01 16 51 H 0.02 0.41 7.74 -51.92 -0.40 0.01 16 52 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 53 H 0.07 1.56 6.26 -51.93 -0.33 1.23 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -32.55 412.02 -8.14 -40.69 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -9.28 Total: 5.32 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 1.11 Total: 4.15 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.06 Total: -50.77 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.08 Total: -22.12 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.55 -8.14 -40.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151415477.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.507 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds