Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00342 * 2 1 4 4 O 1.42900 * 109.47299 * 134.99555 * 3 2 1 5 5 C 1.42900 * 114.00182 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46990 * 330.00077 * 5 4 3 7 7 C 1.53003 * 109.47034 * 90.00147 * 5 4 3 8 8 C 1.50703 * 109.47200 * 210.00054 * 5 4 3 9 9 O 1.21275 * 120.00131 * 355.00183 * 8 5 4 10 10 N 1.34777 * 119.99972 * 175.27565 * 8 5 4 11 11 C 1.46497 * 120.00236 * 174.71084 * 10 8 5 12 12 C 1.53002 * 109.46112 * 303.03592 * 11 10 8 13 13 C 1.53002 * 109.46562 * 302.94672 * 12 11 10 14 14 O 1.42903 * 109.46732 * 184.42430 * 13 12 11 15 15 C 1.42900 * 113.99783 * 179.97438 * 14 13 12 16 16 C 1.53041 * 109.46340 * 183.07243 * 11 10 8 17 17 C 1.53191 * 109.31367 * 301.34656 * 16 11 10 18 18 N 1.46931 * 108.77347 * 305.36598 * 17 16 11 19 19 C 1.36941 * 120.62878 * 233.58555 * 18 17 16 20 20 H 1.08007 * 119.99595 * 31.78555 * 19 18 17 21 21 C 1.38810 * 120.00476 * 211.78728 * 19 18 17 22 22 N 1.31620 * 119.99411 * 10.78969 * 21 19 18 23 23 Si 1.86794 * 120.00327 * 190.79012 * 21 19 18 24 24 H 1.48499 * 109.47152 * 59.99759 * 23 21 19 25 25 H 1.48501 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46755 * 299.99507 * 23 21 19 27 27 C 1.46920 * 118.74294 * 53.60514 * 18 17 16 28 28 C 1.53051 * 109.45792 * 63.00519 * 11 10 8 29 29 H 1.07993 * 120.00166 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99550 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99550 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47529 * 14.99865 * 3 2 1 33 33 H 1.08996 * 109.47466 * 254.99570 * 3 2 1 34 34 H 1.09000 * 109.46567 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46817 * 300.00365 * 7 5 4 36 36 H 1.09000 * 109.46788 * 60.00273 * 7 5 4 37 37 H 0.97001 * 120.00063 * 354.70702 * 10 8 5 38 38 H 1.08992 * 109.47192 * 62.94246 * 12 11 10 39 39 H 1.08995 * 109.47432 * 182.94788 * 12 11 10 40 40 H 1.08997 * 109.47185 * 304.42154 * 13 12 11 41 41 H 1.09006 * 109.47310 * 64.42526 * 13 12 11 42 42 H 1.09000 * 109.47738 * 300.00136 * 15 14 13 43 43 H 1.09005 * 109.46992 * 60.00169 * 15 14 13 44 44 H 1.09001 * 109.46977 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.49557 * 61.29231 * 16 11 10 46 46 H 1.09000 * 109.49949 * 181.39264 * 16 11 10 47 47 H 1.08997 * 109.59175 * 185.57576 * 17 16 11 48 48 H 1.09003 * 109.58939 * 65.14876 * 17 16 11 49 49 H 0.97004 * 119.99877 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.58847 * 186.60150 * 27 18 17 51 51 H 1.09007 * 109.58263 * 66.18136 * 27 18 17 52 52 H 1.09002 * 109.49025 * 178.60823 * 28 11 10 53 53 H 1.09002 * 109.49446 * 298.70347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.9139 2.9308 0.0615 7 6 3.3043 3.3714 2.0803 8 6 5.3207 2.0851 1.4254 9 8 5.6060 0.9405 1.7068 10 7 6.2653 3.0454 1.4697 11 6 7.6082 2.7298 1.9625 12 6 7.5107 2.1622 3.3801 13 6 6.7938 3.1675 4.2836 14 8 6.7935 2.6837 5.6282 15 6 6.1451 3.5532 6.5586 16 6 8.4571 4.0030 1.9807 17 6 8.5242 4.5875 0.5663 18 7 9.0130 3.5494 -0.3516 19 6 10.0903 3.7865 -1.1629 20 1 10.8798 4.4458 -0.8333 21 6 10.1679 3.1797 -2.4089 22 7 9.1212 2.5513 -2.9010 23 14 11.7573 3.2548 -3.3872 24 1 12.8485 2.6159 -2.6085 25 1 11.5807 2.5360 -4.6746 26 1 12.1061 4.6730 -3.6566 27 6 8.3236 2.2524 -0.3827 28 6 8.2587 1.6941 1.0423 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3857 2.1161 0.2660 33 1 2.4757 1.4867 -0.9926 34 1 3.9004 4.2820 2.1404 35 1 2.2829 3.6242 1.7958 36 1 3.2990 2.8753 3.0508 37 1 6.0559 3.9456 1.1752 38 1 6.9499 1.2278 3.3595 39 1 8.5126 1.9762 3.7668 40 1 7.3108 4.1261 4.2425 41 1 5.7661 3.2940 3.9427 42 1 6.6491 4.5197 6.5647 43 1 5.1041 3.6881 6.2651 44 1 6.1881 3.1152 7.5558 45 1 8.0057 4.7316 2.6543 46 1 9.4638 3.7644 2.3239 47 1 9.2069 5.4371 0.5539 48 1 7.5302 4.9103 0.2567 49 1 9.1752 2.1275 -3.7719 50 1 8.8739 1.5612 -1.0212 51 1 7.3132 2.3848 -0.7697 52 1 9.2672 1.4772 1.3944 53 1 7.6661 0.7792 1.0481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151415477.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -103.953080 kcal Electronic energy + Delta-G solvation = -32163.650484 eV Core-core repulsion = 28036.180482 eV Total energy + Delta-G solvation = -4127.470002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75420 -39.73309 -38.65863 -38.33855 -36.18900 -35.01600 -33.83624 -33.18080 -31.85665 -31.49938 -30.31523 -27.65454 -27.16179 -26.40958 -25.19993 -24.62572 -23.64896 -22.15785 -21.65957 -20.91502 -20.14684 -18.86806 -18.29964 -17.91169 -17.46074 -16.97850 -16.81508 -16.73199 -16.23650 -15.94700 -15.93138 -15.66709 -15.33357 -15.21398 -14.97264 -14.72424 -14.37272 -14.24349 -13.93584 -13.82206 -13.72638 -13.38957 -13.19116 -12.99194 -12.96741 -12.77072 -12.70425 -12.58374 -12.45503 -12.29190 -12.17216 -12.06624 -11.93292 -11.85496 -11.78793 -11.34501 -11.27059 -11.05538 -10.56174 -10.52883 -10.32329 -10.19354 -9.94835 -8.58587 -7.84463 -5.35526 1.19766 1.46454 1.49178 1.55038 1.69030 2.00115 2.51546 2.83136 2.99973 3.31830 3.60561 3.72365 3.82613 3.91861 4.01809 4.03581 4.09927 4.12655 4.19888 4.21313 4.38051 4.41644 4.45918 4.55024 4.56024 4.56633 4.60393 4.69608 4.70548 4.75565 4.80035 4.85771 4.90731 4.98548 5.00507 5.07075 5.14224 5.18312 5.18944 5.28396 5.37141 5.51344 5.64385 5.65062 5.67554 5.69695 5.78164 6.12425 6.28697 6.42942 6.68443 7.17801 7.36030 7.88701 8.41157 9.20411 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003968 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.683988 B = 7054.954174 C = 9703.013980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.179 4.179 3 C 0.082 3.918 4 O -0.384 6.384 5 C 0.068 3.932 6 H 0.099 0.901 7 C -0.159 4.159 8 C 0.511 3.489 9 O -0.560 6.560 10 N -0.701 5.701 11 C 0.204 3.796 12 C -0.122 4.122 13 C 0.074 3.926 14 O -0.421 6.421 15 C 0.026 3.974 16 C -0.126 4.126 17 C 0.142 3.858 18 N -0.607 5.607 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.272 1.272 27 C 0.198 3.802 28 C -0.140 4.140 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.410 0.590 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.028 0.972 49 H 0.247 0.753 50 H 0.039 0.961 51 H -0.004 1.004 52 H 0.052 0.948 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.493 6.298 13.361 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.006 3.994 4 O -0.303 6.303 5 C 0.007 3.993 6 H 0.117 0.883 7 C -0.216 4.216 8 C 0.297 3.703 9 O -0.438 6.438 10 N -0.355 5.355 11 C 0.118 3.882 12 C -0.160 4.160 13 C -0.002 4.002 14 O -0.341 6.341 15 C -0.070 4.070 16 C -0.165 4.165 17 C 0.016 3.984 18 N -0.330 5.330 19 C -0.391 4.391 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.197 1.197 27 C 0.072 3.928 28 C -0.180 4.180 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.014 0.986 52 H 0.071 0.929 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.184 5.096 13.585 21.002 hybrid contribution 0.753 0.076 -1.469 1.652 sum -14.431 5.173 12.116 19.540 Atomic orbital electron populations 1.24048 0.94583 1.03675 0.97389 1.22746 0.96496 0.97712 1.02749 1.21825 0.88660 0.97015 0.91879 1.88035 1.44882 1.36546 1.60843 1.22046 0.88092 0.87372 1.01776 0.88314 1.22193 1.02988 0.98549 0.97872 1.20844 0.87437 0.85100 0.76890 1.90639 1.82403 1.21599 1.49154 1.45912 1.10510 1.13295 1.65811 1.19980 0.81552 0.95492 0.91133 1.21791 1.01564 0.99618 0.93052 1.22493 0.99634 0.96896 0.81195 1.87846 1.79306 1.48472 1.18449 1.22918 0.96545 0.94455 0.93094 1.22297 0.99884 0.95644 0.98693 1.21091 0.97369 0.91188 0.88711 1.44219 1.34124 1.09957 1.44748 1.19475 0.97782 1.26862 0.95025 0.91396 1.25893 0.99776 1.01278 0.97512 1.70148 1.29717 1.40271 1.17970 0.85381 0.79885 0.77927 0.77460 1.20701 1.22446 1.19704 1.20265 0.93522 0.87245 0.91786 1.22389 0.99287 0.98525 0.97757 0.86549 0.86592 0.88210 0.90086 0.92406 0.88779 0.89262 0.92440 0.75323 0.92163 0.90860 0.91134 0.93237 0.92651 0.93452 0.88774 0.88102 0.90917 0.91949 0.95392 0.94420 0.94258 0.98603 0.92881 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 14.31 67.78 0.97 -1.48 16 2 C -0.18 -3.82 9.89 25.64 0.25 -3.57 16 3 C 0.08 1.80 6.16 71.23 0.44 2.24 16 4 O -0.38 -11.33 9.51 -129.99 -1.24 -12.56 16 5 C 0.07 1.71 3.13 29.85 0.09 1.80 16 6 H 0.10 2.17 7.79 -2.39 -0.02 2.15 16 7 C -0.16 -2.66 9.48 71.98 0.68 -1.97 16 8 C 0.51 16.66 6.36 87.66 0.56 17.21 16 9 O -0.56 -23.58 12.78 15.97 0.20 -23.37 16 10 N -0.70 -20.18 3.31 -422.79 -1.40 -21.58 16 11 C 0.20 6.56 0.35 3.64 0.00 6.56 16 12 C -0.12 -3.75 4.32 30.60 0.13 -3.62 16 13 C 0.07 1.81 5.50 71.98 0.40 2.20 16 14 O -0.42 -11.10 10.70 -148.98 -1.59 -12.69 16 15 C 0.03 0.44 11.01 113.37 1.25 1.69 16 16 C -0.13 -3.62 4.72 30.67 0.14 -3.47 16 17 C 0.14 5.09 6.24 86.36 0.54 5.62 16 18 N -0.61 -29.21 2.98 -699.09 -2.09 -31.30 16 19 C -0.26 -14.02 9.58 84.03 0.80 -13.21 16 20 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 21 C -0.05 -2.74 5.04 84.86 0.43 -2.31 16 22 N -0.94 -55.78 11.09 21.65 0.24 -55.54 16 23 Si 0.97 44.96 29.57 68.60 2.03 46.99 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 C 0.20 9.83 4.99 86.36 0.43 10.26 16 28 C -0.14 -5.86 4.71 30.67 0.14 -5.72 16 29 H 0.12 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.12 1.32 7.90 -2.91 -0.02 1.30 16 31 H 0.10 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.08 1.29 7.59 -2.38 -0.02 1.27 16 33 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.09 1.14 8.09 -2.39 -0.02 1.13 16 35 H 0.09 1.11 7.87 -2.39 -0.02 1.10 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.41 9.61 7.13 -92.71 -0.66 8.95 16 38 H 0.06 2.25 6.21 -2.39 -0.01 2.24 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 1.41 6.26 -2.39 -0.01 1.40 16 41 H 0.05 1.16 7.47 -2.38 -0.02 1.14 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 2.08 6.34 -2.39 -0.02 2.07 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 48 H 0.03 0.94 6.88 -2.39 -0.02 0.93 16 49 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 50 H 0.04 2.29 6.14 -2.38 -0.01 2.28 16 51 H 0.00 -0.22 7.74 -2.38 -0.02 -0.24 16 52 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.05 2.43 6.26 -2.39 -0.01 2.42 16 Total: -1.00 -75.24 412.02 3.64 -71.60 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.22 Total: 26.22 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 7.26 Total: 12.24 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -3.25 Total: -108.42 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -2.63 Total: -48.63 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -75.24 3.64 -71.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151415477.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.349 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds