Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47266 * 2 1 4 4 O 1.42899 * 109.47164 * 240.00085 * 2 1 3 5 5 C 1.42899 * 114.00327 * 89.99893 * 4 2 1 6 6 C 1.52997 * 109.47249 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.67597 * 307.96403 * 6 5 4 8 8 C 1.54990 * 110.61975 * 184.99982 * 6 5 4 9 9 C 1.54806 * 102.09490 * 204.47151 * 8 6 5 10 10 C 1.54095 * 104.18603 * 20.88211 * 9 8 6 11 11 O 1.43740 * 107.42263 * 1.95081 * 10 9 8 12 12 C 1.50701 * 109.46870 * 119.99962 * 2 1 3 13 13 O 1.21286 * 119.99743 * 120.00112 * 12 2 1 14 14 N 1.34774 * 120.00304 * 299.99578 * 12 2 1 15 15 C 1.46494 * 120.00292 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47230 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47293 * 175.02636 * 16 15 14 18 18 C 1.52996 * 115.54572 * 278.03489 * 17 16 15 19 19 N 1.46505 * 109.46975 * 303.89155 * 18 17 16 20 20 C 1.36939 * 119.99868 * 175.59608 * 19 18 17 21 21 H 1.08000 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99666 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00149 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99481 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47520 * 359.97438 * 24 22 20 26 26 H 1.48510 * 109.47008 * 119.99784 * 24 22 20 27 27 H 1.48504 * 109.47012 * 239.99186 * 24 22 20 28 28 C 1.52994 * 117.49800 * 132.32143 * 17 16 15 29 29 C 1.53001 * 60.00304 * 252.51255 * 28 17 16 30 30 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47061 * 300.00212 * 1 2 3 32 32 H 1.09001 * 109.47019 * 60.00358 * 1 2 3 33 33 H 1.08997 * 109.46771 * 59.99709 * 5 4 2 34 34 H 1.09003 * 109.46986 * 300.00074 * 5 4 2 35 35 H 1.09001 * 110.90824 * 86.27418 * 8 6 5 36 36 H 1.08994 * 110.93770 * 322.68847 * 8 6 5 37 37 H 1.08997 * 110.49062 * 262.20079 * 9 8 6 38 38 H 1.09002 * 110.48879 * 139.55622 * 9 8 6 39 39 H 1.09002 * 109.87986 * 121.45772 * 10 9 8 40 40 H 1.09002 * 109.87839 * 242.45381 * 10 9 8 41 41 H 0.97004 * 119.99597 * 0.02562 * 14 12 2 42 42 H 1.09000 * 109.47386 * 299.99997 * 15 14 12 43 43 H 1.09000 * 109.46879 * 60.00206 * 15 14 12 44 44 H 1.09005 * 109.46767 * 295.02392 * 16 15 14 45 45 H 1.08994 * 109.47131 * 55.02229 * 16 15 14 46 46 H 1.08992 * 109.47883 * 63.89620 * 18 17 16 47 47 H 1.09002 * 109.46897 * 183.90091 * 18 17 16 48 48 H 0.96996 * 120.00184 * 355.60557 * 19 18 17 49 49 H 0.96994 * 119.99679 * 179.97438 * 23 22 20 50 50 H 1.09000 * 117.50328 * 0.02562 * 28 17 16 51 51 H 1.09006 * 117.49709 * 145.02046 * 28 17 16 52 52 H 1.09006 * 117.49658 * 252.51833 * 29 28 17 53 53 H 1.08993 * 117.50191 * 107.49140 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7079 -0.6408 -3.4792 7 1 3.5772 -1.2326 -3.1923 8 6 3.0465 0.2801 -4.6789 9 6 2.9051 -0.6865 -5.8798 10 6 2.0172 -1.8264 -5.3446 11 8 1.6606 -1.4954 -3.9920 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9402 3.6507 16 6 1.6849 -0.2193 4.9000 17 6 2.0907 -1.0089 6.1461 18 6 1.1849 -2.1890 6.5035 19 7 -0.1938 -1.7175 6.6564 20 6 -1.2022 -2.6143 6.8887 21 1 -0.9814 -3.6691 6.9587 22 6 -2.5086 -2.1676 7.0331 23 7 -2.7778 -0.8821 6.9473 24 14 -3.8843 -3.3910 7.3492 25 1 -3.3230 -4.7648 7.4009 26 1 -4.5403 -3.0747 8.6435 27 1 -4.8837 -3.3059 6.2540 28 6 2.7258 -0.2303 7.2999 29 6 3.5863 -1.1535 6.4348 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.9319 0.9513 -2.0450 34 1 1.2538 0.6546 -2.5589 35 1 4.0656 0.6593 -4.6027 36 1 2.3328 1.1005 -4.7537 37 1 3.8808 -1.0704 -6.1775 38 1 2.4194 -0.1858 -6.7175 39 1 1.1179 -1.9134 -5.9544 40 1 2.5694 -2.7661 -5.3628 41 1 1.1488 0.5386 2.5435 42 1 1.8325 -1.9680 3.6510 43 1 3.2855 -0.9398 3.6505 44 1 2.1186 0.7797 4.9457 45 1 0.5986 -0.1422 4.8565 46 1 1.2281 -2.9339 5.7090 47 1 1.5220 -2.6355 7.4390 48 1 -0.3922 -0.7702 6.5931 49 1 -3.6907 -0.5701 7.0479 50 1 2.8542 0.8444 7.1715 51 1 2.4982 -0.5587 8.3141 52 1 3.9247 -2.0892 6.8799 53 1 4.2811 -0.6861 5.7371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168444760.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -124.791919 kcal Electronic energy + Delta-G solvation = -29580.174445 eV Core-core repulsion = 25451.800802 eV Total energy + Delta-G solvation = -4128.373642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12709 -40.39136 -39.59797 -38.47091 -36.10943 -35.76095 -33.37770 -32.97865 -32.79151 -31.36345 -30.43331 -27.82483 -26.64417 -25.59849 -24.62313 -24.05897 -22.93043 -22.63714 -22.21433 -21.50010 -19.94952 -19.05553 -18.35013 -18.30383 -17.52427 -16.93054 -16.87817 -16.68479 -16.52889 -16.39527 -15.97224 -15.84621 -15.39696 -15.26319 -14.89649 -14.75843 -14.53935 -14.22752 -14.16082 -13.92954 -13.51882 -13.33587 -13.14847 -13.04054 -12.98624 -12.82568 -12.66899 -12.54571 -12.52201 -12.26816 -12.22357 -12.08887 -12.05937 -11.94142 -11.82019 -11.55723 -11.11631 -11.03733 -10.91674 -10.66681 -10.60905 -10.46096 -10.12771 -8.96899 -7.95257 -5.22186 1.45718 1.46371 1.51697 1.56119 1.83485 2.53824 2.77634 2.89069 2.91708 3.37888 3.59333 3.64442 3.82598 3.84757 3.85924 3.92276 3.98013 3.98761 4.00783 4.10020 4.13437 4.24831 4.26918 4.36931 4.40957 4.48766 4.49502 4.54555 4.63661 4.65133 4.75678 4.81660 4.84888 4.89760 4.92271 4.94624 4.98479 5.05613 5.08641 5.16491 5.19675 5.19903 5.27679 5.34733 5.38889 5.41652 5.49417 5.92899 6.08748 6.27831 6.53197 7.19390 7.35079 8.10652 8.37397 9.28006 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.002045 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.932450 B =13685.914575 C =15263.841954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.127 0.873 4 O -0.387 6.387 5 C 0.060 3.940 6 C 0.068 3.932 7 H 0.064 0.936 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.033 3.967 11 O -0.402 6.402 12 C 0.506 3.494 13 O -0.577 6.577 14 N -0.712 5.712 15 C 0.135 3.865 16 C -0.077 4.077 17 C -0.142 4.142 18 C 0.187 3.813 19 N -0.734 5.734 20 C -0.245 4.245 21 H 0.068 0.932 22 C -0.071 4.071 23 N -0.963 5.963 24 Si 0.968 3.032 25 H -0.272 1.272 26 H -0.291 1.291 27 H -0.292 1.292 28 C -0.161 4.161 29 C -0.153 4.153 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.415 0.585 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.013 0.987 47 H 0.014 0.986 48 H 0.378 0.622 49 H 0.252 0.748 50 H 0.110 0.890 51 H 0.082 0.918 52 H 0.095 0.905 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.127 10.668 -22.798 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 H 0.145 0.855 4 O -0.306 6.306 5 C -0.016 4.016 6 C 0.011 3.989 7 H 0.082 0.918 8 C -0.176 4.176 9 C -0.187 4.187 10 C -0.044 4.044 11 O -0.322 6.322 12 C 0.293 3.707 13 O -0.455 6.455 14 N -0.366 5.366 15 C 0.011 3.989 16 C -0.115 4.115 17 C -0.143 4.143 18 C 0.061 3.939 19 N -0.377 5.377 20 C -0.377 4.377 21 H 0.086 0.914 22 C -0.263 4.263 23 N -0.613 5.613 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.218 1.218 27 H -0.220 1.220 28 C -0.198 4.198 29 C -0.190 4.190 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.252 0.748 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.031 0.969 47 H 0.031 0.969 48 H 0.211 0.789 49 H 0.060 0.940 50 H 0.129 0.871 51 H 0.101 0.899 52 H 0.113 0.887 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.416 9.502 -22.745 29.074 hybrid contribution -1.353 -0.312 0.399 1.445 sum 14.062 9.190 -22.346 27.956 Atomic orbital electron populations 1.22245 0.92561 1.02862 1.04891 1.21980 0.95652 0.97117 0.83640 0.85529 1.88077 1.86807 1.35898 1.19856 1.22887 1.01746 0.92512 0.84413 1.23339 0.90269 0.91501 0.93791 0.91834 1.23097 1.04337 0.98151 0.92013 1.22938 1.01111 0.95802 0.98897 1.23351 1.00129 0.98161 0.82751 1.89000 1.45663 1.69379 1.28136 1.21058 0.79712 0.84428 0.85513 1.90691 1.39641 1.27881 1.87323 1.45866 1.53480 1.32438 1.04770 1.21167 0.98932 0.95505 0.83255 1.21116 1.01381 0.98479 0.90520 1.21413 0.95272 0.99928 0.97684 1.20223 0.83831 0.93634 0.96236 1.42428 1.02173 1.06580 1.86526 1.19616 0.88169 0.90380 1.39540 0.91415 1.25459 0.99441 0.97708 1.03737 1.69790 1.19161 1.13667 1.58722 0.85156 0.79529 0.78671 0.76907 1.19661 1.21794 1.21951 1.23059 1.03000 0.98626 0.95106 1.23052 0.91388 1.01699 1.02885 0.93854 0.89159 0.89198 0.88979 0.91031 0.87915 0.89059 0.89466 0.88664 0.89127 0.92705 0.74753 0.94517 0.90915 0.88804 0.92042 0.96916 0.96854 0.78888 0.93958 0.87125 0.89919 0.88679 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.42 71.98 0.68 -2.63 16 2 C 0.08 1.66 3.14 29.85 0.09 1.76 16 3 H 0.13 1.63 7.79 -2.39 -0.02 1.61 16 4 O -0.39 -10.35 9.52 -129.03 -1.23 -11.58 16 5 C 0.06 1.04 5.49 71.98 0.40 1.43 16 6 C 0.07 1.24 3.62 31.27 0.11 1.35 16 7 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 8 C -0.14 -1.34 6.59 31.89 0.21 -1.13 16 9 C -0.15 -1.38 7.01 31.58 0.22 -1.16 16 10 C 0.03 0.50 7.69 72.35 0.56 1.06 16 11 O -0.40 -9.50 11.24 -148.98 -1.68 -11.17 16 12 C 0.51 14.93 7.23 87.66 0.63 15.57 16 13 O -0.58 -23.07 16.50 15.99 0.26 -22.81 16 14 N -0.71 -17.98 5.45 -463.07 -2.52 -20.50 16 15 C 0.14 3.92 5.49 86.38 0.47 4.40 16 16 C -0.08 -2.18 5.20 30.60 0.16 -2.02 16 17 C -0.14 -4.43 1.65 -52.18 -0.09 -4.52 16 18 C 0.19 7.79 6.15 86.38 0.53 8.32 16 19 N -0.73 -37.50 5.23 -343.45 -1.80 -39.30 16 20 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 23 N -0.96 -58.25 13.06 21.65 0.28 -57.96 16 24 Si 0.97 46.97 29.55 68.60 2.03 48.99 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 C -0.16 -4.31 9.87 30.59 0.30 -4.00 16 29 C -0.15 -3.73 9.58 30.60 0.29 -3.43 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.47 7.56 -2.39 -0.02 1.45 16 32 H 0.09 1.39 7.87 -2.39 -0.02 1.37 16 33 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.69 8.06 -2.39 -0.02 0.68 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 7.84 7.89 -92.71 -0.73 7.11 16 42 H 0.04 1.33 7.96 -2.39 -0.02 1.31 16 43 H 0.07 1.99 7.72 -2.39 -0.02 1.97 16 44 H 0.09 2.06 7.93 -2.38 -0.02 2.04 16 45 H 0.06 2.12 6.94 -2.39 -0.02 2.10 16 46 H 0.01 0.57 7.96 -2.39 -0.02 0.55 16 47 H 0.01 0.57 8.10 -2.39 -0.02 0.55 16 48 H 0.38 20.05 6.80 -92.71 -0.63 19.42 16 49 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 50 H 0.11 2.48 8.07 -2.39 -0.02 2.47 16 51 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 52 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 53 H 0.11 2.28 7.90 -2.39 -0.02 2.26 16 Total: -1.00 -80.07 429.42 0.76 -79.31 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.47 Total: 36.83 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.88 Total: -1.81 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.04 Total: -117.76 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -2.64 Total: -45.56 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -80.07 0.76 -79.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168444760.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.480 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds