Wall clock time and date at job start Sat Apr 11 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47923 * 2 1 4 4 O 1.42903 * 109.47460 * 239.99778 * 2 1 3 5 5 C 1.42904 * 114.00006 * 89.99686 * 4 2 1 6 6 C 1.52990 * 109.47404 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.27693 * 54.29973 * 6 5 4 8 8 C 1.54946 * 110.31263 * 176.39064 * 6 5 4 9 9 C 1.55416 * 100.89192 * 155.28777 * 8 6 5 10 10 C 1.54384 * 102.31246 * 325.99119 * 9 8 6 11 11 O 1.43236 * 107.58554 * 21.28602 * 10 9 8 12 12 C 1.50705 * 109.47425 * 120.00198 * 2 1 3 13 13 O 1.21280 * 120.00382 * 119.99749 * 12 2 1 14 14 N 1.34776 * 119.99620 * 299.99990 * 12 2 1 15 15 C 1.46495 * 120.00112 * 184.52644 * 14 12 2 16 16 C 1.52999 * 109.47284 * 175.06316 * 15 14 12 17 17 C 1.53005 * 109.47241 * 174.81351 * 16 15 14 18 18 C 1.53000 * 115.56079 * 33.05872 * 17 16 15 19 19 N 1.46500 * 109.47048 * 79.79917 * 18 17 16 20 20 C 1.36930 * 119.99772 * 184.77908 * 19 18 17 21 21 H 1.08002 * 120.00732 * 4.93195 * 20 19 18 22 22 C 1.38811 * 120.00102 * 184.92267 * 20 19 18 23 23 N 1.31615 * 120.00336 * 184.05931 * 22 20 19 24 24 Si 1.86806 * 119.99715 * 4.06862 * 22 20 19 25 25 H 1.48494 * 109.47309 * 92.72851 * 24 22 20 26 26 H 1.48501 * 109.47122 * 212.72823 * 24 22 20 27 27 H 1.48496 * 109.46935 * 332.72582 * 24 22 20 28 28 C 1.53001 * 117.50056 * 178.75112 * 17 16 15 29 29 C 1.53002 * 117.49514 * 247.37345 * 17 16 15 30 30 H 1.09003 * 109.47431 * 59.99862 * 1 2 3 31 31 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47336 * 300.00142 * 1 2 3 33 33 H 1.09003 * 109.47239 * 300.01235 * 5 4 2 34 34 H 1.09005 * 109.46510 * 60.00402 * 5 4 2 35 35 H 1.08992 * 111.13086 * 273.28036 * 8 6 5 36 36 H 1.08998 * 111.12145 * 37.44776 * 8 6 5 37 37 H 1.09007 * 110.88389 * 207.75841 * 9 8 6 38 38 H 1.08999 * 110.93676 * 84.25735 * 9 8 6 39 39 H 1.08993 * 109.83489 * 261.77232 * 10 9 8 40 40 H 1.08995 * 109.90298 * 140.83952 * 10 9 8 41 41 H 0.97012 * 120.00085 * 4.52201 * 14 12 2 42 42 H 1.09000 * 109.47610 * 55.06080 * 15 14 12 43 43 H 1.09006 * 109.47204 * 295.05945 * 15 14 12 44 44 H 1.08995 * 109.47448 * 54.80835 * 16 15 14 45 45 H 1.09005 * 109.46754 * 294.80979 * 16 15 14 46 46 H 1.09006 * 109.46834 * 199.80273 * 18 17 16 47 47 H 1.08995 * 109.47100 * 319.79891 * 18 17 16 48 48 H 0.96995 * 119.99632 * 4.79058 * 19 18 17 49 49 H 0.97011 * 120.00392 * 180.02562 * 23 22 20 50 50 H 1.08997 * 117.49544 * 359.97438 * 28 17 16 51 51 H 1.09001 * 117.49911 * 214.97700 * 28 17 16 52 52 H 1.09006 * 117.49948 * 145.01982 * 29 17 16 53 53 H 1.08997 * 117.50011 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7079 -0.6408 -3.4791 7 1 2.0346 -1.4753 -3.6754 8 6 2.8385 0.2525 -4.7385 9 6 3.9122 -0.5308 -5.5441 10 6 4.8072 -1.1072 -4.4259 11 8 4.0360 -1.1224 -3.2190 12 6 2.0323 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.2748 -0.8798 3.6490 16 6 1.8458 -0.0966 4.8914 17 6 2.3300 -0.8258 6.1464 18 6 3.6567 -1.5745 6.0043 19 7 4.7673 -0.6255 6.1150 20 6 6.0540 -1.0518 5.9211 21 1 6.2451 -2.0678 5.6086 22 6 7.1130 -0.1780 6.1258 23 7 8.3439 -0.5627 5.8629 24 14 6.7910 1.5438 6.7749 25 1 6.9046 1.5440 8.2555 26 1 7.7881 2.4833 6.2019 27 1 5.4244 1.9729 6.3833 28 6 2.0236 -0.1820 7.5001 29 6 1.2678 -1.4380 7.0618 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2538 0.6547 -2.5588 34 1 2.9320 0.9513 -2.0450 35 1 1.8960 0.3034 -5.2835 36 1 3.1939 1.2494 -4.4778 37 1 4.4804 0.1400 -6.1886 38 1 3.4553 -1.3309 -6.1264 39 1 5.6869 -0.4772 -4.2947 40 1 5.1137 -2.1214 -4.6817 41 1 1.0963 0.4986 2.5447 42 1 3.3624 -0.8801 3.5774 43 1 1.9153 -1.9061 3.7245 44 1 0.7589 -0.0175 4.9138 45 1 2.2822 0.9017 4.8602 46 1 3.7380 -2.3227 6.7929 47 1 3.6943 -2.0659 5.0321 48 1 4.5911 0.3047 6.3259 49 1 9.0840 0.0479 6.0064 50 1 1.4774 0.7613 7.4966 51 1 2.7672 -0.2918 8.2895 52 1 1.5142 -2.3742 7.5628 53 1 0.2241 -1.3209 6.7702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168444764.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:15 Heat of formation + Delta-G solvation = -121.338773 kcal Electronic energy + Delta-G solvation = -29915.068524 eV Core-core repulsion = 25786.844621 eV Total energy + Delta-G solvation = -4128.223903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13744 -40.44193 -39.67646 -38.46987 -36.15436 -35.86179 -33.41319 -33.22634 -33.02208 -31.46809 -30.53892 -28.04553 -26.64648 -25.57889 -24.34540 -23.88045 -23.03626 -22.58387 -22.30952 -21.51982 -20.42865 -19.24089 -18.36346 -18.12203 -17.90308 -17.10199 -16.83060 -16.61234 -16.54184 -16.37933 -16.07108 -15.76920 -15.49248 -15.11862 -15.08716 -14.72558 -14.50313 -14.28889 -14.11838 -13.91171 -13.61481 -13.50636 -13.34333 -13.12339 -13.01822 -12.86588 -12.68746 -12.62698 -12.45738 -12.21466 -12.18794 -12.16154 -12.08100 -11.92162 -11.81938 -11.70225 -11.12780 -11.04919 -10.91898 -10.62968 -10.52438 -10.47345 -10.13175 -9.29137 -8.04681 -5.38080 1.32800 1.39978 1.46961 1.55946 1.82333 2.46591 2.75370 2.83987 2.90500 3.25393 3.52582 3.62689 3.73403 3.75289 3.84870 3.89214 3.91372 3.94898 4.03747 4.09489 4.13579 4.14287 4.23386 4.35226 4.41605 4.45734 4.47541 4.55737 4.61182 4.70777 4.79465 4.81218 4.85946 4.86138 4.92640 4.95026 4.98305 4.99141 5.08444 5.14057 5.19792 5.21765 5.22897 5.30461 5.36816 5.43133 5.73169 6.01333 6.18060 6.19511 6.57103 7.06906 7.25573 7.82414 8.05978 9.17673 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.002468 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.570310 B =11340.828705 C =13286.459821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.072 3.928 3 H 0.113 0.887 4 O -0.389 6.389 5 C 0.056 3.944 6 C 0.070 3.930 7 H 0.072 0.928 8 C -0.137 4.137 9 C -0.147 4.147 10 C 0.033 3.967 11 O -0.414 6.414 12 C 0.499 3.501 13 O -0.581 6.581 14 N -0.708 5.708 15 C 0.126 3.874 16 C -0.070 4.070 17 C -0.149 4.149 18 C 0.182 3.818 19 N -0.747 5.747 20 C -0.237 4.237 21 H 0.044 0.956 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.965 3.035 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.245 1.245 28 C -0.166 4.166 29 C -0.146 4.146 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.419 0.581 42 H 0.034 0.966 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.015 0.985 47 H 0.022 0.978 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.118 0.882 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.937 9.668 -18.809 33.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.130 0.870 4 O -0.308 6.308 5 C -0.020 4.020 6 C 0.013 3.987 7 H 0.090 0.910 8 C -0.175 4.175 9 C -0.184 4.184 10 C -0.043 4.043 11 O -0.334 6.334 12 C 0.285 3.715 13 O -0.459 6.459 14 N -0.363 5.363 15 C 0.002 3.998 16 C -0.108 4.108 17 C -0.150 4.150 18 C 0.056 3.944 19 N -0.394 5.394 20 C -0.368 4.368 21 H 0.062 0.938 22 C -0.260 4.260 23 N -0.638 5.638 24 Si 0.792 3.208 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.170 1.170 28 C -0.203 4.203 29 C -0.183 4.183 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.257 0.743 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.204 0.796 49 H 0.067 0.933 50 H 0.136 0.864 51 H 0.097 0.903 52 H 0.107 0.893 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.165 8.538 -18.747 32.521 hybrid contribution 1.008 0.700 0.354 1.278 sum -24.156 9.238 -18.393 31.736 Atomic orbital electron populations 1.22242 0.90392 1.03598 1.05575 1.22085 0.97078 0.96325 0.83409 0.86992 1.88082 1.87050 1.35615 1.20057 1.23027 1.01176 0.92491 0.85265 1.23240 0.84472 0.96595 0.94405 0.90977 1.23266 1.01453 0.99008 0.93729 1.23135 0.96958 1.00842 0.97497 1.23352 0.95223 1.01241 0.84472 1.88578 1.24509 1.86978 1.33362 1.21310 0.79763 0.84437 0.85983 1.90751 1.39524 1.28301 1.87372 1.45757 1.49118 1.36975 1.04467 1.21268 0.97317 0.96917 0.84261 1.21153 1.02313 0.97955 0.89365 1.21494 0.95906 1.04790 0.92850 1.20361 0.85194 0.91275 0.97571 1.42616 1.01865 1.08223 1.86658 1.19009 0.83855 0.96978 1.36929 0.93817 1.25640 0.94561 1.03246 1.02556 1.69929 0.99355 1.37925 1.56583 0.85253 0.78156 0.79152 0.78270 1.20311 1.22191 1.16980 1.23024 1.03071 0.98396 0.95825 1.23190 0.97084 0.97034 1.00985 0.88720 0.92662 0.88232 0.87868 0.92768 0.86773 0.89268 0.87878 0.89438 0.91364 0.91660 0.74282 0.94712 0.92622 0.87268 0.90948 0.96734 0.96053 0.79639 0.93314 0.86380 0.90316 0.89256 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.42 71.98 0.68 -1.25 16 2 C 0.07 1.53 3.15 29.85 0.09 1.63 16 3 H 0.11 1.75 7.79 -2.39 -0.02 1.73 16 4 O -0.39 -10.88 9.52 -127.37 -1.21 -12.09 16 5 C 0.06 1.06 5.45 71.98 0.39 1.45 16 6 C 0.07 1.39 3.72 31.26 0.12 1.50 16 7 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 8 C -0.14 -1.45 6.58 32.09 0.21 -1.24 16 9 C -0.15 -1.66 7.02 31.90 0.22 -1.43 16 10 C 0.03 0.66 7.80 72.45 0.56 1.23 16 11 O -0.41 -11.97 11.04 -148.29 -1.64 -13.61 16 12 C 0.50 15.58 7.23 87.66 0.63 16.21 16 13 O -0.58 -26.45 16.51 16.01 0.26 -26.18 16 14 N -0.71 -17.11 5.47 -463.06 -2.53 -19.64 16 15 C 0.13 3.85 4.41 86.38 0.38 4.23 16 16 C -0.07 -1.63 5.53 30.60 0.17 -1.46 16 17 C -0.15 -4.22 1.90 -52.18 -0.10 -4.32 16 18 C 0.18 7.48 5.66 86.38 0.49 7.97 16 19 N -0.75 -36.89 5.35 -343.45 -1.84 -38.73 16 20 C -0.24 -14.54 10.47 84.03 0.88 -13.66 16 21 H 0.04 3.01 8.06 -2.91 -0.02 2.98 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 23 N -0.99 -66.92 13.97 21.65 0.30 -66.62 16 24 Si 0.97 47.17 27.95 68.60 1.92 49.09 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 27 H -0.25 -10.52 6.23 99.48 0.62 -9.90 16 28 C -0.17 -4.01 9.88 30.60 0.30 -3.71 16 29 C -0.15 -3.12 9.82 30.60 0.30 -2.82 16 30 H 0.09 0.67 7.87 -2.39 -0.02 0.65 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.62 7.47 -2.39 -0.02 0.61 16 33 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 34 H 0.05 1.03 8.09 -2.38 -0.02 1.01 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.82 8.06 -2.39 -0.02 0.80 16 37 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.42 5.81 7.78 -92.70 -0.72 5.09 16 42 H 0.03 1.45 6.97 -2.39 -0.02 1.43 16 43 H 0.06 1.81 8.06 -2.38 -0.02 1.79 16 44 H 0.11 1.60 7.89 -2.39 -0.02 1.58 16 45 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.01 0.63 7.95 -2.38 -0.02 0.61 16 47 H 0.02 0.97 5.95 -2.39 -0.01 0.95 16 48 H 0.37 17.04 5.38 -92.71 -0.50 16.54 16 49 H 0.26 16.52 8.31 -92.70 -0.77 15.75 16 50 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.09 2.03 8.09 -2.38 -0.02 2.01 16 53 H 0.13 1.87 8.04 -2.39 -0.02 1.86 16 Total: -1.00 -94.71 424.83 0.65 -94.05 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.41 Total: 33.25 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.80 Total: 0.48 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -4.07 Total: -124.99 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -2.59 Total: -51.89 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.92 Total: 49.09 kcal Total: -94.71 0.65 -94.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168444764.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.287 kcal (2) G-P(sol) polarization free energy of solvation -94.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds