Wall clock time and date at job start Sat Apr 11 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47074 * 2 1 4 4 O 1.42896 * 109.47519 * 119.99674 * 2 1 3 5 5 C 1.42895 * 114.00483 * 270.00579 * 4 2 1 6 6 C 1.53002 * 109.47498 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.26972 * 54.29389 * 6 5 4 8 8 C 1.54941 * 110.31055 * 176.38470 * 6 5 4 9 9 C 1.55422 * 100.89054 * 155.28926 * 8 6 5 10 10 C 1.54382 * 102.30666 * 325.99065 * 9 8 6 11 11 O 1.43236 * 107.59202 * 21.28753 * 10 9 8 12 12 C 1.50694 * 109.47077 * 240.00084 * 2 1 3 13 13 O 1.21280 * 120.00424 * 244.99768 * 12 2 1 14 14 N 1.34781 * 119.99827 * 64.99870 * 12 2 1 15 15 C 1.46505 * 119.99625 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46920 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47175 * 175.02461 * 16 15 14 18 18 C 1.52997 * 115.55014 * 278.03520 * 17 16 15 19 19 N 1.46496 * 109.47235 * 303.89999 * 18 17 16 20 20 C 1.36935 * 120.00293 * 175.59474 * 19 18 17 21 21 H 1.07994 * 120.00155 * 359.97438 * 20 19 18 22 22 C 1.38818 * 120.00044 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99802 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99824 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47285 * 59.99808 * 24 22 20 26 26 H 1.48502 * 109.47268 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47182 * 299.99620 * 24 22 20 28 28 C 1.52998 * 117.49796 * 132.32617 * 17 16 15 29 29 C 1.53001 * 117.50011 * 63.70294 * 17 16 15 30 30 H 1.08994 * 109.47181 * 59.99930 * 1 2 3 31 31 H 1.08997 * 109.46895 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46826 * 299.99958 * 1 2 3 33 33 H 1.09000 * 109.46685 * 299.99769 * 5 4 2 34 34 H 1.08999 * 109.47794 * 59.99292 * 5 4 2 35 35 H 1.09003 * 111.12731 * 273.28068 * 8 6 5 36 36 H 1.08999 * 111.12772 * 37.44367 * 8 6 5 37 37 H 1.09000 * 110.87707 * 207.75582 * 9 8 6 38 38 H 1.08995 * 110.93444 * 84.25616 * 9 8 6 39 39 H 1.08998 * 109.83098 * 261.76973 * 10 9 8 40 40 H 1.08999 * 109.89849 * 140.84299 * 10 9 8 41 41 H 0.96994 * 120.00552 * 0.02562 * 14 12 2 42 42 H 1.09001 * 109.47225 * 60.00376 * 15 14 12 43 43 H 1.09003 * 109.47236 * 299.99848 * 15 14 12 44 44 H 1.08998 * 109.46871 * 295.02670 * 16 15 14 45 45 H 1.09004 * 109.46662 * 55.02638 * 16 15 14 46 46 H 1.08999 * 109.47577 * 63.89686 * 18 17 16 47 47 H 1.09000 * 109.47329 * 183.89791 * 18 17 16 48 48 H 0.97008 * 120.00088 * 355.59310 * 19 18 17 49 49 H 0.97002 * 119.99372 * 179.97438 * 23 22 20 50 50 H 1.08999 * 117.50125 * 359.97438 * 28 17 16 51 51 H 1.09003 * 117.49809 * 145.02426 * 28 17 16 52 52 H 1.09000 * 117.49950 * 214.98461 * 29 17 16 53 53 H 1.09006 * 117.49529 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0064 -0.6735 1.1667 5 6 2.2001 0.1830 2.2941 6 6 2.7080 -0.6407 3.4792 7 1 3.6005 -1.1988 3.1963 8 6 3.0112 0.2830 4.6856 9 6 2.8597 -0.7164 5.8661 10 6 1.7357 -1.6490 5.3656 11 8 1.6840 -1.5373 3.9385 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7466 -1.1216 14 7 1.7918 -0.1941 -2.4520 15 6 2.2806 -0.8844 -3.6481 16 6 1.8752 -0.0946 -4.8943 17 6 2.4901 -0.7471 -6.1341 18 6 3.9468 -0.3773 -6.4205 19 7 4.0690 1.0785 -6.5282 20 6 5.3016 1.6519 -6.6931 21 1 6.1837 1.0308 -6.7433 22 6 5.4173 3.0314 -6.7958 23 7 4.3422 3.7882 -6.7351 24 14 7.0988 3.8135 -7.0200 25 1 7.7172 3.3075 -8.2717 26 1 6.9516 5.2890 -7.1013 27 1 7.9645 3.4659 -5.8645 28 6 1.5725 -0.9871 -7.3346 29 6 2.0404 -2.1677 -6.4813 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9319 0.9514 2.0449 34 1 1.2539 0.6547 2.5589 35 1 4.0253 0.6792 4.6320 36 1 2.2801 1.0883 4.7573 37 1 2.5577 -0.1991 6.7768 38 1 3.7831 -1.2730 6.0262 39 1 0.7821 -1.3424 5.7953 40 1 1.9546 -2.6787 5.6482 41 1 1.2958 0.6349 -2.5392 42 1 1.8464 -1.8832 -3.6942 43 1 3.3670 -0.9622 -3.6043 44 1 0.7890 -0.0926 -4.9856 45 1 2.2345 0.9308 -4.8073 46 1 4.5792 -0.7358 -5.6082 47 1 4.2615 -0.8387 -7.3566 48 1 3.2768 1.6365 -6.4828 49 1 4.4232 4.7522 -6.8065 50 1 0.5307 -0.6806 -7.2411 51 1 2.0066 -0.8815 -8.3289 52 1 2.7824 -2.8388 -6.9141 53 1 1.3068 -2.6376 -5.8262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168444765.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:18 Heat of formation + Delta-G solvation = -124.674649 kcal Electronic energy + Delta-G solvation = -29579.897292 eV Core-core repulsion = 25451.528735 eV Total energy + Delta-G solvation = -4128.368557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12932 -40.42931 -39.59983 -38.46202 -36.10365 -35.75465 -33.38082 -32.99201 -32.78770 -31.38377 -30.45686 -27.82145 -26.63607 -25.59216 -24.61404 -24.03330 -22.93349 -22.54900 -22.30252 -21.52561 -19.95136 -19.04656 -18.35524 -18.29443 -17.73151 -17.03147 -16.78115 -16.65747 -16.58008 -16.26392 -16.07356 -15.59240 -15.48604 -15.20997 -14.98730 -14.77662 -14.48239 -14.16421 -14.14104 -13.91925 -13.51454 -13.36218 -13.16380 -13.06648 -13.00999 -12.76834 -12.68089 -12.58588 -12.47848 -12.28058 -12.20086 -12.14261 -12.09260 -11.92598 -11.83191 -11.70241 -11.10862 -11.03919 -10.90933 -10.61556 -10.49809 -10.45679 -10.13077 -8.96586 -7.94200 -5.21419 1.46566 1.48867 1.53840 1.54955 1.80890 2.54685 2.75444 2.86620 2.91854 3.38543 3.53044 3.61769 3.83207 3.84589 3.86135 3.94532 3.95527 3.98506 4.01453 4.10357 4.12794 4.25074 4.26842 4.36315 4.40859 4.45527 4.48301 4.56860 4.64282 4.68538 4.78219 4.80621 4.84513 4.87964 4.94347 4.96079 4.98414 4.99647 5.08238 5.17215 5.19582 5.22321 5.27515 5.34268 5.38433 5.41323 5.49405 5.99339 6.14530 6.28369 6.53245 7.19346 7.35644 8.11247 8.38130 9.28675 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.002108 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.244209 B =13278.824382 C =15063.867168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 H 0.113 0.887 4 O -0.385 6.385 5 C 0.056 3.944 6 C 0.075 3.925 7 H 0.060 0.940 8 C -0.141 4.141 9 C -0.150 4.150 10 C 0.037 3.963 11 O -0.403 6.403 12 C 0.507 3.493 13 O -0.577 6.577 14 N -0.712 5.712 15 C 0.135 3.865 16 C -0.077 4.077 17 C -0.141 4.141 18 C 0.188 3.812 19 N -0.734 5.734 20 C -0.248 4.248 21 H 0.068 0.932 22 C -0.070 4.070 23 N -0.963 5.963 24 Si 0.969 3.031 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.161 4.161 29 C -0.154 4.154 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.416 0.584 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.014 0.986 47 H 0.013 0.987 48 H 0.378 0.622 49 H 0.252 0.748 50 H 0.110 0.890 51 H 0.083 0.917 52 H 0.095 0.905 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 -6.211 22.265 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.130 0.870 4 O -0.304 6.304 5 C -0.020 4.020 6 C 0.017 3.983 7 H 0.078 0.922 8 C -0.179 4.179 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.324 6.324 12 C 0.293 3.707 13 O -0.455 6.455 14 N -0.366 5.366 15 C 0.012 3.988 16 C -0.115 4.115 17 C -0.142 4.142 18 C 0.061 3.939 19 N -0.377 5.377 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.263 4.263 23 N -0.614 5.614 24 Si 0.798 3.202 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.198 4.198 29 C -0.191 4.191 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.032 0.968 47 H 0.031 0.969 48 H 0.211 0.789 49 H 0.061 0.939 50 H 0.128 0.872 51 H 0.101 0.899 52 H 0.114 0.886 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.042 -7.263 22.199 25.836 hybrid contribution 0.901 1.201 -0.340 1.540 sum -10.141 -6.062 21.859 24.847 Atomic orbital electron populations 1.22195 0.91343 1.03330 1.04989 1.22033 0.96663 0.96566 0.83722 0.86950 1.88070 1.86930 1.35625 1.19748 1.23001 1.01580 0.92581 0.84883 1.23095 0.90551 0.90706 0.93909 0.92178 1.23271 1.04559 0.98097 0.91940 1.23141 0.99118 0.97009 0.99426 1.23346 0.99996 1.00248 0.80296 1.88501 1.54963 1.66712 1.22186 1.21050 0.78998 0.85124 0.85495 1.90690 1.41842 1.25758 1.87242 1.45862 1.57506 1.28230 1.04963 1.21165 0.98282 0.96106 0.83289 1.21113 1.00874 0.98834 0.90652 1.21415 0.94832 1.00664 0.97306 1.20218 0.92851 0.84365 0.96451 1.42416 1.05726 1.01725 1.87842 1.19548 0.87133 0.90599 1.40676 0.91411 1.25468 1.00470 0.96674 1.03677 1.69784 1.28658 1.04007 1.58920 0.85283 0.79832 0.77022 0.78037 1.20656 1.21768 1.20786 1.23059 0.99603 1.02345 0.94798 1.23049 1.03314 0.89836 1.02936 0.88686 0.92809 0.89480 0.90096 0.90748 0.88072 0.88676 0.87661 0.90113 0.90263 0.91469 0.74747 0.91194 0.94281 0.88936 0.91912 0.96823 0.96880 0.78899 0.93939 0.87188 0.89866 0.88643 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.07 1.57 3.13 29.85 0.09 1.67 16 3 H 0.11 1.84 7.79 -2.38 -0.02 1.82 16 4 O -0.38 -10.54 9.52 -127.41 -1.21 -11.75 16 5 C 0.06 1.04 5.45 71.98 0.39 1.44 16 6 C 0.07 1.43 3.72 31.26 0.12 1.55 16 7 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 8 C -0.14 -1.51 6.58 32.09 0.21 -1.30 16 9 C -0.15 -1.43 7.02 31.90 0.22 -1.20 16 10 C 0.04 0.55 7.80 72.45 0.56 1.11 16 11 O -0.40 -9.35 11.04 -148.29 -1.64 -10.99 16 12 C 0.51 15.14 7.18 87.65 0.63 15.77 16 13 O -0.58 -23.36 16.51 15.96 0.26 -23.10 16 14 N -0.71 -18.13 5.52 -463.04 -2.55 -20.68 16 15 C 0.14 3.95 5.49 86.38 0.47 4.43 16 16 C -0.08 -2.19 5.20 30.60 0.16 -2.03 16 17 C -0.14 -4.42 1.65 -52.18 -0.09 -4.51 16 18 C 0.19 7.76 6.15 86.38 0.53 8.29 16 19 N -0.73 -37.24 5.23 -343.47 -1.80 -39.04 16 20 C -0.25 -14.01 9.99 84.04 0.84 -13.17 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 23 N -0.96 -57.78 13.06 21.65 0.28 -57.50 16 24 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 28 C -0.16 -4.35 9.87 30.59 0.30 -4.05 16 29 C -0.15 -3.82 9.58 30.60 0.29 -3.52 16 30 H 0.09 1.08 7.92 -2.39 -0.02 1.06 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.10 7.87 -2.39 -0.02 1.08 16 33 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.07 1.11 7.87 -2.39 -0.02 1.09 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.77 8.06 -2.39 -0.02 0.75 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.42 7.89 8.26 -92.71 -0.77 7.12 16 42 H 0.07 1.97 7.72 -2.39 -0.02 1.95 16 43 H 0.04 1.41 7.96 -2.39 -0.02 1.39 16 44 H 0.09 2.07 7.93 -2.39 -0.02 2.05 16 45 H 0.06 2.15 6.94 -2.39 -0.02 2.13 16 46 H 0.01 0.60 7.96 -2.39 -0.02 0.58 16 47 H 0.01 0.56 8.10 -2.39 -0.02 0.54 16 48 H 0.38 19.93 6.80 -92.70 -0.63 19.30 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.11 2.52 8.07 -2.39 -0.02 2.50 16 51 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 52 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 53 H 0.11 2.34 7.90 -2.38 -0.02 2.32 16 Total: -1.00 -78.84 430.18 0.76 -78.08 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.51 Total: 37.66 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.89 Total: -1.00 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -4.07 Total: -117.22 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.59 Total: -45.83 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.84 0.76 -78.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168444765.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.596 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds