Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46671 * 2 1 4 4 O 1.42900 * 109.47369 * 240.00036 * 2 1 3 5 5 C 1.42898 * 114.00412 * 150.95892 * 4 2 1 6 6 C 1.54248 * 108.89517 * 274.24395 * 5 4 2 7 7 C 1.50471 * 108.52360 * 159.26418 * 6 5 4 8 8 C 1.54065 * 112.50036 * 94.15165 * 7 6 5 9 9 C 1.54062 * 112.81570 * 318.27618 * 8 7 6 10 10 C 1.50476 * 112.49863 * 318.29031 * 9 8 7 11 11 C 1.45539 * 108.89931 * 151.35762 * 5 4 2 12 12 C 1.50693 * 109.47362 * 119.99473 * 2 1 3 13 13 O 1.21284 * 119.99909 * 114.99748 * 12 2 1 14 14 N 1.34774 * 120.00475 * 295.00740 * 12 2 1 15 15 C 1.46499 * 120.00434 * 179.97438 * 14 12 2 16 16 H 1.09005 * 110.63838 * 31.85336 * 15 14 12 17 17 C 1.54337 * 110.85018 * 268.69177 * 15 14 12 18 18 N 1.47029 * 107.26228 * 219.67480 * 17 15 14 19 19 C 1.36938 * 125.64172 * 178.84962 * 18 17 15 20 20 H 1.08000 * 120.00343 * 347.69430 * 19 18 17 21 21 C 1.38819 * 119.99472 * 167.69531 * 19 18 17 22 22 N 1.31620 * 120.00222 * 325.76341 * 21 19 18 23 23 Si 1.86802 * 119.99716 * 145.76404 * 21 19 18 24 24 H 1.48502 * 109.46968 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46952 * 239.99909 * 23 21 19 26 26 H 1.48499 * 109.47071 * 120.00019 * 23 21 19 27 27 C 1.47420 * 108.70412 * 358.57952 * 18 17 15 28 28 C 1.54908 * 104.83323 * 24.35994 * 27 18 17 29 29 H 1.09005 * 111.00196 * 81.06377 * 28 27 18 30 30 O 1.42900 * 111.00474 * 204.87631 * 28 27 18 31 31 H 1.09003 * 109.46852 * 175.50525 * 1 2 3 32 32 H 1.09001 * 109.47404 * 295.49960 * 1 2 3 33 33 H 1.08994 * 109.47496 * 55.50764 * 1 2 3 34 34 H 1.08996 * 108.87284 * 32.75197 * 5 4 2 35 35 H 1.09002 * 109.62320 * 278.97431 * 6 5 4 36 36 H 1.08997 * 109.62831 * 39.54513 * 6 5 4 37 37 H 1.09001 * 108.87523 * 333.36564 * 7 6 5 38 38 H 1.09001 * 108.87263 * 214.92644 * 7 6 5 39 39 H 1.09008 * 108.80971 * 197.42215 * 8 7 6 40 40 H 1.08991 * 108.73181 * 79.08226 * 8 7 6 41 41 H 1.09000 * 108.88368 * 197.51045 * 9 8 7 42 42 H 1.09004 * 108.79902 * 79.00736 * 9 8 7 43 43 H 1.09001 * 109.62791 * 334.44015 * 10 9 8 44 44 H 1.09004 * 109.79113 * 213.95510 * 10 9 8 45 45 H 1.09000 * 108.89325 * 303.44154 * 11 5 4 46 46 H 1.09000 * 108.89439 * 62.03061 * 11 5 4 47 47 H 0.97001 * 119.99639 * 359.97438 * 14 12 2 48 48 H 1.08996 * 109.98871 * 100.19613 * 17 15 14 49 49 H 1.09004 * 109.77713 * 339.02550 * 17 15 14 50 50 H 0.96997 * 119.99626 * 354.27457 * 22 21 19 51 51 H 1.09002 * 110.36302 * 143.19870 * 27 18 17 52 52 H 1.09004 * 110.36938 * 265.52217 * 27 18 17 53 53 H 0.96691 * 114.00067 * 298.54305 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2762 -0.2086 -1.6287 6 6 3.0573 1.0095 -2.5494 7 6 4.3401 1.7929 -2.6187 8 6 5.2087 1.3961 -3.8278 9 6 5.2451 -0.1260 -4.0633 10 6 5.3727 -0.9041 -2.7817 11 6 3.9600 -1.3002 -2.3062 12 6 2.0324 -0.7102 1.2305 13 8 2.6530 -1.7466 1.1215 14 7 1.7919 -0.1941 2.4520 15 6 2.2798 -0.8849 3.6482 16 1 3.2130 -1.4069 3.4366 17 6 1.2173 -1.8656 4.1880 18 7 1.2459 -1.7756 5.6552 19 6 0.4373 -2.4721 6.5133 20 1 -0.4243 -3.0012 6.1338 21 6 0.7251 -2.4979 7.8711 22 7 1.9766 -2.4907 8.2789 23 14 -0.6638 -2.5428 9.1195 24 1 -1.9679 -2.5435 8.4092 25 1 -0.5793 -1.3479 9.9971 26 1 -0.5482 -3.7721 9.9445 27 6 2.2937 -0.8165 6.0497 28 6 2.4630 0.1130 4.8221 29 1 1.6909 0.8823 4.8051 30 8 3.7662 0.6987 4.7990 31 1 -0.3633 -1.0245 -0.0805 32 1 -0.3634 0.4424 0.9276 33 1 -0.3634 0.5819 -0.8469 34 1 3.8715 0.1021 -0.7702 35 1 2.7817 0.6691 -3.5475 36 1 2.2656 1.6384 -2.1425 37 1 4.9082 1.6208 -1.7046 38 1 4.1017 2.8542 -2.6890 39 1 6.2260 1.7504 -3.6611 40 1 4.8100 1.8803 -4.7191 41 1 6.0929 -0.3633 -4.7059 42 1 4.3262 -0.4255 -4.5676 43 1 5.8540 -0.2855 -2.0242 44 1 5.9667 -1.8020 -2.9527 45 1 4.0418 -2.1445 -1.6216 46 1 3.3700 -1.6035 -3.1712 47 1 1.2957 0.6349 2.5391 48 1 1.4548 -2.8820 3.8741 49 1 0.2319 -1.5818 3.8184 50 1 2.6975 -2.5513 7.6328 51 1 1.9741 -0.2421 6.9193 52 1 3.2265 -1.3393 6.2612 53 1 3.9614 1.2543 5.5659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196045798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -148.668288 kcal Electronic energy + Delta-G solvation = -31230.484606 eV Core-core repulsion = 27101.075607 eV Total energy + Delta-G solvation = -4129.408999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54562 -40.47770 -39.50331 -37.63848 -36.90396 -35.78158 -34.05135 -33.31964 -32.92896 -31.35005 -30.05281 -28.98639 -26.37770 -25.83971 -25.30949 -24.88841 -22.61006 -22.10883 -21.70702 -21.43971 -20.20101 -19.68975 -18.72290 -18.47456 -18.17324 -17.32304 -16.86696 -16.36300 -16.25024 -15.91263 -15.73966 -15.56216 -15.38818 -15.19941 -14.88937 -14.78970 -14.34732 -14.29591 -14.03453 -13.97763 -13.64153 -13.42990 -13.36373 -13.19666 -13.12480 -13.09123 -12.68308 -12.58322 -12.53417 -12.42654 -11.96387 -11.87630 -11.86527 -11.76692 -11.55829 -11.42475 -11.34213 -11.25696 -11.19126 -11.08203 -10.58420 -10.31344 -10.23834 -9.17134 -8.46769 -5.37947 1.46785 1.58225 1.64569 1.83050 1.86457 2.55025 2.59737 2.87166 3.08370 3.42352 3.49790 3.60039 3.73663 3.79442 3.88253 3.92370 3.94312 3.96871 4.02502 4.14908 4.20861 4.22989 4.28224 4.33812 4.37395 4.40800 4.52716 4.66902 4.69114 4.77892 4.82434 4.84182 4.86727 4.94244 4.98063 4.99838 5.04971 5.17945 5.19646 5.23292 5.29927 5.31201 5.31638 5.33834 5.42888 5.54513 5.58078 6.07728 6.19460 6.46856 6.70188 6.76043 7.14341 7.60058 8.14298 8.86323 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002282 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.695963 B =12267.178452 C =12580.510248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 H 0.118 0.882 4 O -0.373 6.373 5 C 0.095 3.905 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.108 4.108 11 C -0.120 4.120 12 C 0.483 3.517 13 O -0.576 6.576 14 N -0.697 5.697 15 C 0.156 3.844 16 H 0.071 0.929 17 C 0.131 3.869 18 N -0.616 5.616 19 C -0.358 4.358 20 H 0.062 0.938 21 C -0.072 4.072 22 N -0.932 5.932 23 Si 1.119 2.881 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.293 1.293 27 C 0.122 3.878 28 C 0.106 3.894 29 H 0.102 0.898 30 O -0.565 6.565 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.418 0.582 48 H 0.001 0.999 49 H 0.048 0.952 50 H 0.253 0.747 51 H 0.044 0.956 52 H 0.005 0.995 53 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 15.791 -23.973 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 H 0.135 0.865 4 O -0.291 6.291 5 C 0.038 3.962 6 C -0.167 4.167 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.156 4.156 10 C -0.145 4.145 11 C -0.157 4.157 12 C 0.270 3.730 13 O -0.454 6.454 14 N -0.352 5.352 15 C 0.050 3.950 16 H 0.089 0.911 17 C 0.005 3.995 18 N -0.344 5.344 19 C -0.485 4.485 20 H 0.080 0.920 21 C -0.268 4.268 22 N -0.573 5.573 23 Si 0.942 3.058 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.221 1.221 27 C -0.004 4.004 28 C 0.045 3.955 29 H 0.120 0.880 30 O -0.373 6.373 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.256 0.744 48 H 0.019 0.981 49 H 0.066 0.934 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.023 0.977 53 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.687 14.574 -23.099 27.364 hybrid contribution 0.689 -0.328 -0.421 0.872 sum 2.376 14.246 -23.519 27.600 Atomic orbital electron populations 1.21881 0.89146 1.03594 1.05293 1.22186 0.97791 0.96143 0.82018 0.86461 1.88052 1.36639 1.62932 1.41510 1.21200 0.83781 0.95165 0.96048 1.21830 0.98696 0.95651 1.00543 1.21294 0.95420 1.00270 0.98754 1.21921 0.99942 0.95275 0.98200 1.21359 1.02451 0.95098 0.96713 1.21213 0.94517 1.00453 0.98331 1.20506 0.97001 0.97619 1.00596 1.22355 0.78881 0.85552 0.86181 1.90703 1.41990 1.25568 1.87184 1.45757 1.57477 1.27710 1.04209 1.21461 0.96275 0.92816 0.84485 0.91113 1.21706 0.97272 0.95936 0.84619 1.44697 1.41473 1.47395 1.00883 1.19998 1.04958 1.32790 0.90794 0.91978 1.27204 1.02243 0.98945 0.98447 1.70877 0.99837 1.49542 1.37040 0.82852 0.72648 0.76827 0.73424 1.19655 1.20660 1.22067 1.22095 0.91021 0.90958 0.96337 1.23028 0.85929 0.93754 0.92796 0.88011 1.86422 1.32595 1.68710 1.49581 0.92994 0.88696 0.88206 0.94197 0.90432 0.90319 0.93028 0.90484 0.91831 0.91125 0.91224 0.91870 0.92017 0.91175 0.94150 0.91008 0.74353 0.98065 0.93399 0.93772 0.93740 0.97725 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.53 71.98 0.69 -1.60 16 2 C 0.08 1.70 2.76 29.85 0.08 1.78 16 3 H 0.12 1.71 7.36 -2.39 -0.02 1.70 16 4 O -0.37 -9.47 9.09 -129.99 -1.18 -10.66 16 5 C 0.10 2.04 1.91 28.74 0.06 2.10 16 6 C -0.13 -1.88 5.15 30.20 0.16 -1.72 16 7 C -0.12 -1.49 5.31 30.14 0.16 -1.33 16 8 C -0.12 -1.29 5.85 31.31 0.18 -1.11 16 9 C -0.12 -1.53 5.32 30.14 0.16 -1.37 16 10 C -0.11 -1.84 5.61 30.20 0.17 -1.67 16 11 C -0.12 -2.65 4.82 28.73 0.14 -2.51 16 12 C 0.48 14.79 7.05 87.66 0.62 15.40 16 13 O -0.58 -24.02 16.15 15.95 0.26 -23.77 16 14 N -0.70 -19.43 5.01 -436.90 -2.19 -21.62 16 15 C 0.16 5.81 3.05 46.19 0.14 5.95 16 16 H 0.07 3.11 7.55 -2.38 -0.02 3.09 16 17 C 0.13 5.87 7.01 86.73 0.61 6.48 16 18 N -0.62 -31.92 3.33 -691.94 -2.30 -34.22 16 19 C -0.36 -20.55 9.96 84.03 0.84 -19.71 16 20 H 0.06 3.59 8.02 -2.91 -0.02 3.56 16 21 C -0.07 -4.10 4.95 84.86 0.42 -3.68 16 22 N -0.93 -57.17 12.88 21.65 0.28 -56.89 16 23 Si 1.12 50.53 30.03 68.60 2.06 52.59 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.12 5.63 5.07 86.86 0.44 6.07 16 28 C 0.11 3.57 4.06 31.99 0.13 3.70 16 29 H 0.10 2.83 8.01 -2.38 -0.02 2.81 16 30 O -0.57 -17.10 13.47 -148.98 -2.01 -19.11 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.17 7.78 -2.39 -0.02 1.15 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.97 7.09 -2.39 -0.02 0.95 16 35 H 0.08 1.09 6.97 -2.39 -0.02 1.07 16 36 H 0.08 0.96 7.54 -2.39 -0.02 0.94 16 37 H 0.05 0.76 6.63 -2.39 -0.02 0.74 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.82 6.62 -2.38 -0.02 0.80 16 43 H 0.06 1.11 6.98 -2.39 -0.02 1.09 16 44 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.50 7.46 -2.39 -0.02 1.48 16 47 H 0.42 8.12 8.27 -92.71 -0.77 7.35 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.05 2.00 8.03 -2.38 -0.02 1.98 16 50 H 0.25 16.00 6.47 -92.71 -0.60 15.40 16 51 H 0.04 2.15 7.83 -2.39 -0.02 2.13 16 52 H 0.00 0.26 7.03 -2.38 -0.02 0.24 16 53 H 0.40 8.54 9.11 -74.06 -0.67 7.86 16 Total: -1.00 -79.39 406.74 -0.46 -79.85 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.36 Total: 27.02 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.98 Total: 6.79 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.21 Total: -112.73 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.93 Total: -53.53 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.06 Total: 52.59 kcal Total: -79.39 -0.46 -79.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196045798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.817 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds