Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46768 * 2 1 4 4 O 1.42905 * 109.47088 * 240.00570 * 2 1 3 5 5 C 1.42900 * 114.00116 * 89.99772 * 4 2 1 6 6 C 1.53002 * 109.47075 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47775 * 304.97573 * 6 5 4 8 8 C 1.53088 * 109.47890 * 184.93826 * 6 5 4 9 9 C 1.53180 * 109.16157 * 182.40438 * 8 6 5 10 10 C 1.53178 * 109.03232 * 56.98536 * 9 8 6 11 11 C 1.53089 * 109.16499 * 303.01699 * 10 9 8 12 12 O 1.42899 * 109.41457 * 57.60994 * 11 10 9 13 13 C 1.50696 * 109.47551 * 120.00084 * 2 1 3 14 14 O 1.21279 * 119.99838 * 106.85810 * 13 2 1 15 15 N 1.34780 * 120.00204 * 286.86502 * 13 2 1 16 16 C 1.48219 * 119.96775 * 5.29358 * 15 13 2 17 17 C 1.47139 * 110.33876 * 102.47246 * 16 15 13 18 18 C 1.53795 * 111.84156 * 58.29270 * 17 16 15 19 19 N 1.43463 * 107.96259 * 281.66708 * 18 17 16 20 20 C 1.36941 * 118.94202 * 273.65510 * 19 18 17 21 21 H 1.07999 * 119.99790 * 28.43489 * 20 19 18 22 22 C 1.38807 * 120.00106 * 208.44098 * 20 19 18 23 23 N 1.31618 * 119.99979 * 10.26020 * 22 20 19 24 24 Si 1.86799 * 120.00074 * 190.26284 * 22 20 19 25 25 H 1.48505 * 109.46703 * 60.00061 * 24 22 20 26 26 H 1.48499 * 109.47327 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47380 * 299.99936 * 24 22 20 28 28 C 1.48853 * 122.11926 * 93.63197 * 19 18 17 29 29 C 1.43617 * 119.97096 * 185.27567 * 15 13 2 30 30 H 1.08999 * 109.46870 * 187.25842 * 1 2 3 31 31 H 1.09005 * 109.47099 * 307.25558 * 1 2 3 32 32 H 1.08997 * 109.47397 * 67.25370 * 1 2 3 33 33 H 1.09000 * 109.46652 * 300.00084 * 5 4 2 34 34 H 1.08992 * 109.47101 * 59.99876 * 5 4 2 35 35 H 1.08990 * 109.52960 * 302.31539 * 8 6 5 36 36 H 1.09000 * 109.51979 * 62.50856 * 8 6 5 37 37 H 1.08997 * 109.54604 * 297.12280 * 9 8 6 38 38 H 1.08996 * 109.54649 * 176.84871 * 9 8 6 39 39 H 1.09001 * 109.52263 * 183.11456 * 10 9 8 40 40 H 1.09000 * 109.52285 * 62.92229 * 10 9 8 41 41 H 1.09005 * 109.48118 * 297.63134 * 11 10 9 42 42 H 1.08996 * 109.48440 * 177.59146 * 11 10 9 43 43 H 1.08994 * 109.32499 * 342.19998 * 16 15 13 44 44 H 1.08998 * 109.31996 * 222.73748 * 16 15 13 45 45 H 1.09000 * 109.00440 * 178.89959 * 17 16 15 46 46 H 1.09002 * 109.00408 * 297.76067 * 17 16 15 47 47 H 1.08996 * 109.76265 * 41.28742 * 18 17 16 48 48 H 1.09008 * 109.76055 * 162.00008 * 18 17 16 49 49 H 0.97002 * 120.00272 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.48034 * 80.60243 * 28 19 18 51 51 H 1.08998 * 109.48240 * 200.63284 * 28 19 18 52 52 H 1.09006 * 108.87627 * 149.90616 * 29 15 13 53 53 H 1.08996 * 108.79464 * 31.41546 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2941 6 6 2.7078 -0.6406 -3.4793 7 1 3.6069 -1.1828 -3.1865 8 6 3.0324 0.2932 -4.6482 9 6 3.4827 -0.5432 -5.8499 10 6 2.3819 -1.5498 -6.1984 11 6 2.0824 -2.4124 -4.9696 12 8 1.6996 -1.5706 -3.8802 13 6 2.0324 -0.7104 1.2304 14 8 2.5218 -1.8160 1.1349 15 7 1.9379 -0.1172 2.4369 16 6 1.2350 1.1809 2.5707 17 6 -0.1075 0.9794 3.1382 18 6 -0.0503 0.2925 4.5131 19 7 0.1697 -1.1089 4.2986 20 6 -0.9096 -1.9238 4.0836 21 1 -1.8050 -1.5256 3.6297 22 6 -0.8529 -3.2617 4.4493 23 7 0.1490 -3.7022 5.1803 24 14 -2.1985 -4.4369 3.9037 25 1 -2.2530 -4.4724 2.4201 26 1 -1.9064 -5.7981 4.4205 27 1 -3.5054 -3.9746 4.4362 28 6 1.5334 -1.7055 4.3018 29 6 2.5179 -0.7436 3.5918 30 1 -0.3633 -1.0194 0.1298 31 1 -0.3633 0.6221 0.8180 32 1 -0.3634 0.3973 -0.9477 33 1 1.2537 0.6548 -2.5588 34 1 2.9318 0.9515 -2.0450 35 1 2.1440 0.8654 -4.9150 36 1 3.8324 0.9747 -4.3587 37 1 4.3992 -1.0774 -5.5995 38 1 3.6618 0.1111 -6.7030 39 1 2.7165 -2.1864 -7.0175 40 1 1.4802 -1.0149 -6.4965 41 1 2.9733 -2.9779 -4.6964 42 1 1.2700 -3.1021 -5.1989 43 1 1.1457 1.6455 1.5888 44 1 1.8091 1.8360 3.2259 45 1 -0.5965 1.9477 3.2452 46 1 -0.6915 0.3603 2.4572 47 1 0.7689 0.7088 5.0993 48 1 -0.9932 0.4421 5.0393 49 1 0.1885 -4.6370 5.4362 50 1 1.8583 -1.8642 5.3301 51 1 1.5140 -2.6597 3.7753 52 1 2.8246 0.0299 4.2959 53 1 3.3983 -1.3062 3.2812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198351638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -119.379806 kcal Electronic energy + Delta-G solvation = -32021.922493 eV Core-core repulsion = 27893.783537 eV Total energy + Delta-G solvation = -4128.138956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.46344 -40.44645 -38.98642 -38.13677 -36.13390 -34.56517 -34.00694 -33.67058 -32.84668 -31.65968 -29.35424 -28.00801 -27.09250 -25.93934 -25.16902 -24.60676 -23.28448 -23.11187 -21.42904 -21.20689 -19.83178 -18.80933 -18.30945 -17.99263 -17.54785 -17.09296 -16.87570 -16.64836 -16.33568 -15.92692 -15.60190 -15.48627 -15.37406 -15.34160 -14.91355 -14.81567 -14.44276 -14.10754 -13.92659 -13.68096 -13.60814 -13.56784 -13.31552 -13.20443 -12.98877 -12.81434 -12.76002 -12.51545 -12.38028 -12.21361 -12.15065 -12.08221 -11.96996 -11.78676 -11.68794 -11.59021 -11.33504 -11.27191 -10.86192 -10.54293 -10.43045 -10.35631 -9.52800 -8.59927 -7.84639 -5.32526 1.37199 1.43115 1.46524 1.64537 1.91537 2.48688 2.77286 2.83067 3.30736 3.48634 3.74506 3.75742 3.85479 3.90865 3.94227 4.03203 4.04352 4.10850 4.16472 4.29177 4.30480 4.36066 4.39654 4.47654 4.54507 4.59642 4.63613 4.65374 4.70482 4.78541 4.84124 4.85544 4.88423 4.92351 4.97805 5.02085 5.05220 5.10265 5.15578 5.19985 5.31606 5.34156 5.36819 5.58732 5.62921 5.72282 5.87993 6.13445 6.32157 6.41991 6.55363 7.18377 7.31915 7.96151 8.37994 9.19554 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003043 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.053796 B = 9200.317366 C =10257.993024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.084 3.916 3 H 0.126 0.874 4 O -0.389 6.389 5 C 0.060 3.940 6 C 0.086 3.914 7 H 0.048 0.952 8 C -0.139 4.139 9 C -0.122 4.122 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.401 6.401 13 C 0.502 3.498 14 O -0.586 6.586 15 N -0.583 5.583 16 C 0.111 3.889 17 C -0.169 4.169 18 C 0.153 3.847 19 N -0.603 5.603 20 C -0.252 4.252 21 H 0.063 0.937 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.955 3.045 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.266 1.266 28 C 0.180 3.820 29 C 0.105 3.895 30 H 0.025 0.975 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.245 0.755 50 H 0.015 0.985 51 H 0.020 0.980 52 H 0.096 0.904 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 18.078 -19.761 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 H 0.143 0.857 4 O -0.308 6.308 5 C -0.016 4.016 6 C 0.028 3.972 7 H 0.066 0.934 8 C -0.177 4.177 9 C -0.160 4.160 10 C -0.189 4.189 11 C -0.027 4.027 12 O -0.320 6.320 13 C 0.290 3.710 14 O -0.466 6.466 15 N -0.315 5.315 16 C -0.009 4.009 17 C -0.210 4.210 18 C 0.026 3.974 19 N -0.325 5.325 20 C -0.383 4.383 21 H 0.081 0.919 22 C -0.248 4.248 23 N -0.584 5.584 24 Si 0.784 3.216 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.191 1.191 28 C 0.053 3.947 29 C -0.021 4.021 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.033 0.967 51 H 0.038 0.962 52 H 0.114 0.886 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.441 17.174 -19.637 26.870 hybrid contribution -0.567 -1.717 0.131 1.813 sum 5.874 15.456 -19.506 25.571 Atomic orbital electron populations 1.22378 0.93012 1.02263 1.04844 1.21913 0.95465 0.96646 0.83591 0.85714 1.88108 1.86723 1.36026 1.19897 1.22912 1.01784 0.92524 0.84389 1.22227 0.90766 0.90719 0.93455 0.93377 1.22100 1.03258 0.98056 0.94285 1.21616 0.97995 0.98065 0.98308 1.22170 1.00023 0.98897 0.97768 1.22746 1.00734 0.92682 0.86522 1.87988 1.41041 1.50976 1.52042 1.21116 0.78270 0.85729 0.85881 1.90662 1.47195 1.21699 1.86998 1.47515 1.55139 1.22968 1.05853 1.21209 0.93202 0.82740 1.03731 1.21910 0.97663 1.01882 0.99510 1.20533 0.98950 0.83235 0.94652 1.43817 1.01538 1.03999 1.83160 1.19348 0.95052 0.91927 1.31965 0.91931 1.25777 0.99859 1.00305 0.98858 1.70132 1.33684 1.14345 1.40212 0.85530 0.80178 0.78485 0.77435 1.21829 1.22196 1.19150 1.21470 0.83658 0.93997 0.95528 1.21661 0.95522 0.97284 0.87617 0.95537 0.88382 0.89075 0.91061 0.88910 0.90133 0.88661 0.91826 0.89254 0.89308 0.90953 0.93785 0.88736 0.87564 0.87988 0.87819 0.93277 0.92863 0.94327 0.94599 0.96701 0.96156 0.88614 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 9.08 71.98 0.65 -4.12 16 2 C 0.08 2.50 2.29 29.85 0.07 2.57 16 3 H 0.13 2.39 6.64 -2.38 -0.02 2.38 16 4 O -0.39 -13.06 9.52 -125.79 -1.20 -14.26 16 5 C 0.06 1.31 5.41 71.98 0.39 1.70 16 6 C 0.09 1.92 2.93 30.62 0.09 2.01 16 7 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 8 C -0.14 -1.91 5.42 30.68 0.17 -1.75 16 9 C -0.12 -1.50 6.03 30.71 0.19 -1.32 16 10 C -0.15 -2.12 6.14 30.68 0.19 -1.94 16 11 C 0.05 1.03 6.84 72.01 0.49 1.52 16 12 O -0.40 -11.10 10.37 -144.36 -1.50 -12.59 16 13 C 0.50 20.10 6.98 87.66 0.61 20.71 16 14 O -0.59 -30.74 16.15 15.68 0.25 -30.49 16 15 N -0.58 -20.32 2.46 -831.21 -2.04 -22.36 16 16 C 0.11 2.60 5.05 84.23 0.43 3.02 16 17 C -0.17 -4.69 5.15 29.04 0.15 -4.54 16 18 C 0.15 5.69 5.63 87.21 0.49 6.18 16 19 N -0.60 -29.97 2.53 -698.09 -1.77 -31.74 16 20 C -0.25 -14.27 9.25 84.03 0.78 -13.50 16 21 H 0.06 3.45 7.85 -2.91 -0.02 3.43 16 22 C -0.05 -3.17 5.03 84.86 0.43 -2.74 16 23 N -0.94 -59.12 10.88 21.65 0.24 -58.88 16 24 Si 0.95 48.79 29.57 68.60 2.03 50.82 16 25 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 26 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 27 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 28 C 0.18 9.23 5.15 86.56 0.45 9.67 16 29 C 0.10 4.13 5.22 87.55 0.46 4.58 16 30 H 0.03 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.10 2.43 3.92 -2.38 -0.01 2.42 16 32 H 0.09 2.05 7.75 -2.39 -0.02 2.03 16 33 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 34 H 0.09 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 1.74 5.07 -2.39 -0.01 1.73 16 44 H 0.10 1.78 8.05 -2.39 -0.02 1.76 16 45 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 1.66 5.85 -2.39 -0.01 1.64 16 47 H 0.05 1.77 7.59 -2.39 -0.02 1.75 16 48 H 0.04 1.48 8.02 -2.38 -0.02 1.46 16 49 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 51 H 0.02 1.25 6.64 -2.39 -0.02 1.24 16 52 H 0.10 3.01 7.73 -2.38 -0.02 2.99 16 53 H 0.05 2.28 7.44 -2.39 -0.02 2.27 16 Total: -1.00 -85.91 398.59 2.91 -83.00 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.88 Total: 14.43 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.02 Total: 22.07 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.57 Total: -112.98 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -2.44 Total: -57.34 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -85.91 2.91 -83.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198351638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.381 kcal (2) G-P(sol) polarization free energy of solvation -85.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds