Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47154 * 2 1 4 4 O 1.42903 * 109.46617 * 119.99952 * 2 1 3 5 5 C 1.42906 * 113.99640 * 269.99866 * 4 2 1 6 6 C 1.53007 * 109.46726 * 180.02562 * 5 4 2 7 7 H 1.08991 * 109.48239 * 54.97665 * 6 5 4 8 8 C 1.53093 * 109.47686 * 174.99905 * 6 5 4 9 9 C 1.53175 * 109.16148 * 177.58673 * 8 6 5 10 10 C 1.53179 * 109.03918 * 303.02462 * 9 8 6 11 11 C 1.53084 * 109.16301 * 56.97811 * 10 9 8 12 12 O 1.42903 * 109.47754 * 294.93892 * 6 5 4 13 13 C 1.50696 * 109.47184 * 239.99390 * 2 1 3 14 14 O 1.21287 * 120.00254 * 255.35464 * 13 2 1 15 15 N 1.34781 * 120.00055 * 75.36012 * 13 2 1 16 16 C 1.48215 * 119.96444 * 356.36025 * 15 13 2 17 17 C 1.47143 * 110.33686 * 102.51649 * 16 15 13 18 18 C 1.53793 * 111.84430 * 58.29720 * 17 16 15 19 19 N 1.43457 * 107.95684 * 281.66253 * 18 17 16 20 20 C 1.36936 * 118.94302 * 273.60852 * 19 18 17 21 21 H 1.07994 * 119.99628 * 30.79815 * 20 19 18 22 22 C 1.38819 * 120.00190 * 210.80332 * 20 19 18 23 23 N 1.31612 * 119.99676 * 197.53731 * 22 20 19 24 24 Si 1.86802 * 119.99975 * 17.53762 * 22 20 19 25 25 H 1.48498 * 109.46797 * 275.20663 * 24 22 20 26 26 H 1.48499 * 109.46916 * 155.20463 * 24 22 20 27 27 H 1.48501 * 109.46888 * 35.20394 * 24 22 20 28 28 C 1.48861 * 122.11935 * 93.88962 * 19 18 17 29 29 C 1.43609 * 119.97164 * 176.38454 * 15 13 2 30 30 H 1.09000 * 109.47363 * 186.14136 * 1 2 3 31 31 H 1.08999 * 109.47290 * 306.15041 * 1 2 3 32 32 H 1.09005 * 109.46663 * 66.14791 * 1 2 3 33 33 H 1.09002 * 109.46976 * 299.99917 * 5 4 2 34 34 H 1.08991 * 109.47115 * 60.00401 * 5 4 2 35 35 H 1.08991 * 109.52344 * 297.49622 * 8 6 5 36 36 H 1.09008 * 109.52264 * 57.62377 * 8 6 5 37 37 H 1.09000 * 109.54318 * 62.88700 * 9 8 6 38 38 H 1.09004 * 109.54544 * 183.06150 * 9 8 6 39 39 H 1.09004 * 109.52123 * 176.88773 * 10 9 8 40 40 H 1.09005 * 109.51800 * 297.00735 * 10 9 8 41 41 H 1.08992 * 109.48273 * 62.37889 * 11 10 9 42 42 H 1.09007 * 109.47920 * 182.41271 * 11 10 9 43 43 H 1.08998 * 109.32896 * 342.24728 * 16 15 13 44 44 H 1.08996 * 109.32688 * 222.77845 * 16 15 13 45 45 H 1.09001 * 109.00861 * 297.68436 * 17 16 15 46 46 H 1.09009 * 109.00271 * 178.90228 * 17 16 15 47 47 H 1.08997 * 109.76669 * 162.04677 * 18 17 16 48 48 H 1.09008 * 109.80744 * 41.30390 * 18 17 16 49 49 H 0.97002 * 120.00162 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.48054 * 80.34667 * 28 19 18 51 51 H 1.09003 * 109.47913 * 200.37708 * 28 19 18 52 52 H 1.09006 * 108.87987 * 31.42470 * 29 15 13 53 53 H 1.09000 * 108.87596 * 149.95833 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7089 -0.6406 3.4790 7 1 3.6076 -1.1829 3.1854 8 6 3.0349 0.2935 4.6473 9 6 3.4860 -0.5428 5.8488 10 6 2.3855 -1.5492 6.1986 11 6 2.0846 -2.4119 4.9703 12 8 1.7008 -1.5703 3.8810 13 6 2.0324 -0.7105 -1.2303 14 8 2.4849 -1.8322 -1.1406 15 7 1.9789 -0.0995 -2.4305 16 6 1.3525 1.2382 -2.5528 17 6 2.3869 2.2806 -2.6460 18 6 3.3244 2.0511 -3.8433 19 7 4.2603 1.0256 -3.4820 20 6 5.4071 1.3777 -2.8217 21 1 5.4084 2.2304 -2.1590 22 6 6.5680 0.6388 -3.0044 23 7 7.5561 0.7417 -2.1412 24 14 6.7275 -0.5016 -4.4753 25 1 6.1079 -1.8125 -4.1547 26 1 8.1642 -0.6982 -4.7956 27 1 6.0373 0.0995 -5.6447 28 6 4.0277 -0.4083 -3.8071 29 6 2.5283 -0.7453 -3.5895 30 1 -0.3634 -1.0217 0.1099 31 1 -0.3634 0.6062 0.8298 32 1 -0.3633 0.4156 -0.9400 33 1 2.9319 0.9514 2.0450 34 1 1.2537 0.6547 2.5588 35 1 3.8346 0.9747 4.3568 36 1 2.1470 0.8667 4.9142 37 1 4.4023 -1.0772 5.5976 38 1 3.6678 0.1119 6.7012 39 1 2.7208 -2.1856 7.0175 40 1 1.4845 -1.0140 6.4986 41 1 2.9751 -2.9776 4.6964 42 1 1.2723 -3.1014 5.2006 43 1 0.7289 1.4259 -1.6788 44 1 0.7316 1.2653 -3.4482 45 1 2.9757 2.2795 -1.7287 46 1 1.9035 3.2516 -2.7547 47 1 3.8586 2.9725 -4.0751 48 1 2.7453 1.7328 -4.7102 49 1 8.3672 0.2251 -2.2685 50 1 4.2983 -0.5939 -4.8466 51 1 4.6390 -1.0326 -3.1553 52 1 2.4220 -1.8242 -3.4757 53 1 1.9685 -0.4272 -4.4691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198351640.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -119.907198 kcal Electronic energy + Delta-G solvation = -32193.885815 eV Core-core repulsion = 28065.723990 eV Total energy + Delta-G solvation = -4128.161825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53151 -40.48225 -39.12824 -38.23198 -36.23703 -34.58719 -33.98842 -33.89172 -33.20666 -31.94873 -29.43780 -28.05343 -27.49830 -25.96032 -25.14529 -24.75338 -23.31239 -23.00815 -21.67597 -21.25349 -20.19926 -18.90865 -18.31513 -17.97952 -17.57297 -17.31097 -16.92650 -16.88344 -16.48875 -15.97184 -15.85983 -15.53859 -15.46814 -15.31451 -15.03185 -14.92389 -14.51250 -14.35724 -14.22167 -13.83385 -13.66313 -13.62663 -13.53717 -13.37596 -13.20297 -12.92392 -12.77951 -12.59143 -12.42219 -12.28628 -12.20657 -12.01137 -11.87437 -11.83826 -11.63332 -11.60066 -11.49711 -11.31373 -10.94861 -10.74415 -10.47807 -10.40972 -9.61297 -8.81406 -8.19887 -5.54610 1.28851 1.32328 1.41930 1.52563 1.91979 2.39681 2.69512 2.76374 3.03676 3.40260 3.43142 3.75887 3.85186 3.88140 3.91300 3.99383 4.01561 4.02678 4.08991 4.14444 4.16883 4.26470 4.36615 4.39920 4.45078 4.48084 4.57837 4.59573 4.62958 4.69201 4.71969 4.79836 4.83551 4.87375 4.89661 4.92456 4.96623 4.97620 5.02521 5.07837 5.12730 5.20116 5.26121 5.33923 5.51885 5.73440 5.89987 6.06355 6.13129 6.25733 6.44472 6.98404 7.22406 7.65501 8.03151 9.00341 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003405 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.898220 B = 8220.033784 C = 9288.002950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.075 3.925 3 H 0.095 0.905 4 O -0.387 6.387 5 C 0.065 3.935 6 C 0.091 3.909 7 H 0.038 0.962 8 C -0.142 4.142 9 C -0.124 4.124 10 C -0.149 4.149 11 C 0.049 3.951 12 O -0.391 6.391 13 C 0.507 3.493 14 O -0.584 6.584 15 N -0.586 5.586 16 C 0.106 3.894 17 C -0.162 4.162 18 C 0.150 3.850 19 N -0.610 5.610 20 C -0.244 4.244 21 H 0.050 0.950 22 C -0.035 4.035 23 N -0.960 5.960 24 Si 0.947 3.053 25 H -0.287 1.287 26 H -0.313 1.313 27 H -0.253 1.253 28 C 0.104 3.896 29 C 0.110 3.890 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.032 0.968 46 H 0.105 0.895 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.258 0.742 50 H 0.042 0.958 51 H 0.024 0.976 52 H 0.066 0.934 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 2.950 9.868 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.113 0.887 4 O -0.305 6.305 5 C -0.011 4.011 6 C 0.033 3.967 7 H 0.056 0.944 8 C -0.180 4.180 9 C -0.162 4.162 10 C -0.186 4.186 11 C -0.027 4.027 12 O -0.311 6.311 13 C 0.295 3.705 14 O -0.463 6.463 15 N -0.317 5.317 16 C -0.014 4.014 17 C -0.202 4.202 18 C 0.025 3.975 19 N -0.334 5.334 20 C -0.374 4.374 21 H 0.067 0.933 22 C -0.230 4.230 23 N -0.607 5.607 24 Si 0.776 3.224 25 H -0.214 1.214 26 H -0.242 1.242 27 H -0.178 1.178 28 C -0.021 4.021 29 C -0.016 4.016 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.051 0.949 46 H 0.124 0.876 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.043 0.957 52 H 0.084 0.916 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.679 2.135 9.828 22.100 hybrid contribution 1.725 -0.693 -0.363 1.894 sum -17.955 1.442 9.465 20.348 Atomic orbital electron populations 1.22299 0.90544 1.03714 1.05215 1.22018 0.97125 0.95744 0.83741 0.88716 1.88059 1.87100 1.35538 1.19852 1.22790 1.01472 0.92283 0.84580 1.22083 0.90627 0.90743 0.93262 0.94402 1.22102 1.03137 0.98134 0.94587 1.21623 0.98219 0.98266 0.98054 1.22160 0.99791 0.98703 0.97966 1.22787 1.00964 0.92640 0.86315 1.87943 1.40340 1.50726 1.52093 1.21059 0.77710 0.86004 0.85713 1.90645 1.47613 1.21816 1.86243 1.47487 1.57368 1.20147 1.06736 1.21371 0.95052 0.79298 1.05654 1.21724 0.98247 1.00089 1.00187 1.20662 0.90610 0.90798 0.95452 1.44063 1.20817 1.01284 1.67232 1.18798 0.87282 1.12878 1.18457 0.93272 1.26005 0.95662 1.01043 1.00270 1.69951 1.07983 1.45540 1.37178 0.85986 0.74780 0.79261 0.82336 1.21381 1.24188 1.17780 1.22579 0.96773 0.85486 0.97304 1.21528 0.93194 0.97840 0.89000 0.92525 0.88899 0.88098 0.91475 0.89947 0.90084 0.89421 0.92470 0.89240 0.89100 0.90374 0.94213 0.87579 0.87522 0.87055 0.94926 0.87649 0.93474 0.91023 0.93344 0.94062 0.95712 0.91592 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.08 71.98 0.65 -2.68 16 2 C 0.07 2.29 2.28 29.85 0.07 2.36 16 3 H 0.10 2.62 7.06 -2.39 -0.02 2.60 16 4 O -0.39 -14.15 9.53 -125.89 -1.20 -15.35 16 5 C 0.06 1.81 5.41 71.98 0.39 2.20 16 6 C 0.09 2.50 2.93 30.63 0.09 2.59 16 7 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.14 -2.80 5.42 30.68 0.17 -2.63 16 9 C -0.12 -2.10 6.03 30.71 0.19 -1.92 16 10 C -0.15 -2.34 6.14 30.68 0.19 -2.15 16 11 C 0.05 1.05 6.84 72.01 0.49 1.55 16 12 O -0.39 -11.14 10.37 -144.42 -1.50 -12.63 16 13 C 0.51 19.77 6.97 87.66 0.61 20.38 16 14 O -0.58 -29.31 16.09 15.52 0.25 -29.06 16 15 N -0.59 -19.04 2.46 -830.51 -2.04 -21.08 16 16 C 0.11 2.28 5.00 84.23 0.42 2.71 16 17 C -0.16 -4.28 5.64 29.04 0.16 -4.12 16 18 C 0.15 5.06 5.63 87.21 0.49 5.55 16 19 N -0.61 -27.93 2.26 -697.39 -1.57 -29.51 16 20 C -0.24 -13.99 9.66 84.04 0.81 -13.18 16 21 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 22 C -0.04 -2.15 5.22 84.86 0.44 -1.71 16 23 N -0.96 -63.24 13.97 21.65 0.30 -62.94 16 24 Si 0.95 49.36 23.99 68.60 1.65 51.00 16 25 H -0.29 -14.91 6.44 99.48 0.64 -14.27 16 26 H -0.31 -16.55 7.11 99.48 0.71 -15.85 16 27 H -0.25 -12.12 6.82 99.48 0.68 -11.44 16 28 C 0.10 4.63 4.49 86.68 0.39 5.01 16 29 C 0.11 3.78 5.29 87.67 0.46 4.25 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.46 8.02 -2.39 -0.02 1.45 16 32 H 0.10 1.52 5.92 -2.38 -0.01 1.50 16 33 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.08 1.81 8.02 -2.39 -0.02 1.79 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 1.89 8.14 -2.38 -0.02 1.88 16 43 H 0.11 1.72 4.25 -2.39 -0.01 1.71 16 44 H 0.11 1.61 8.05 -2.39 -0.02 1.59 16 45 H 0.03 1.12 7.88 -2.39 -0.02 1.10 16 46 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 48 H 0.07 1.95 7.59 -2.38 -0.02 1.93 16 49 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 50 H 0.04 1.76 5.86 -2.39 -0.01 1.75 16 51 H 0.02 1.34 5.76 -2.39 -0.01 1.32 16 52 H 0.07 2.44 7.32 -2.38 -0.02 2.42 16 53 H 0.11 2.82 7.73 -2.39 -0.02 2.80 16 Total: -1.00 -86.99 396.57 2.69 -84.29 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.78 Total: 17.09 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 6.03 Total: 18.19 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.31 Total: -113.53 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -2.45 Total: -57.05 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.65 Total: 51.00 kcal Total: -86.99 2.69 -84.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198351640.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.613 kcal (2) G-P(sol) polarization free energy of solvation -86.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds