Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47305 * 2 1 4 4 O 1.42900 * 109.46774 * 239.99917 * 2 1 3 5 5 C 1.42898 * 113.99621 * 90.00428 * 4 2 1 6 6 C 1.53004 * 109.46923 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.48397 * 54.97739 * 6 5 4 8 8 C 1.53091 * 109.48174 * 174.99846 * 6 5 4 9 9 C 1.53179 * 109.16554 * 177.59036 * 8 6 5 10 10 C 1.53176 * 109.03519 * 303.02143 * 9 8 6 11 11 C 1.53086 * 109.16422 * 56.98066 * 10 9 8 12 12 O 1.42901 * 109.48112 * 294.93913 * 6 5 4 13 13 C 1.50700 * 109.46888 * 120.00388 * 2 1 3 14 14 O 1.21278 * 120.00202 * 113.24702 * 13 2 1 15 15 N 1.34774 * 120.00139 * 293.23962 * 13 2 1 16 16 C 1.48212 * 119.96839 * 356.55852 * 15 13 2 17 17 C 1.47131 * 110.34759 * 102.46607 * 16 15 13 18 18 C 1.53791 * 111.84308 * 58.29565 * 17 16 15 19 19 N 1.43467 * 107.96295 * 281.67263 * 18 17 16 20 20 C 1.36938 * 118.93832 * 273.60815 * 19 18 17 21 21 H 1.08001 * 119.99897 * 26.68710 * 20 19 18 22 22 C 1.38813 * 120.00185 * 206.68879 * 20 19 18 23 23 N 1.31618 * 119.99698 * 28.76013 * 22 20 19 24 24 Si 1.86795 * 120.00136 * 208.75592 * 22 20 19 25 25 H 1.48494 * 109.47314 * 59.99771 * 24 22 20 26 26 H 1.48504 * 109.47216 * 300.00067 * 24 22 20 27 27 H 1.48503 * 109.47380 * 180.02562 * 24 22 20 28 28 C 1.48859 * 122.12432 * 93.88124 * 19 18 17 29 29 C 1.43621 * 119.97219 * 176.53334 * 15 13 2 30 30 H 1.09001 * 109.47585 * 318.62774 * 1 2 3 31 31 H 1.08999 * 109.47216 * 78.63067 * 1 2 3 32 32 H 1.09010 * 109.47453 * 198.63028 * 1 2 3 33 33 H 1.09002 * 109.47521 * 299.99294 * 5 4 2 34 34 H 1.09001 * 109.47333 * 59.99653 * 5 4 2 35 35 H 1.08997 * 109.52079 * 297.49948 * 8 6 5 36 36 H 1.09003 * 109.52237 * 57.62136 * 8 6 5 37 37 H 1.08996 * 109.54004 * 62.88856 * 9 8 6 38 38 H 1.08999 * 109.53935 * 183.06316 * 9 8 6 39 39 H 1.09003 * 109.51692 * 176.88814 * 10 9 8 40 40 H 1.08998 * 109.52013 * 297.00519 * 10 9 8 41 41 H 1.08997 * 109.48378 * 62.37411 * 11 10 9 42 42 H 1.09000 * 109.48215 * 182.40729 * 11 10 9 43 43 H 1.09003 * 109.32798 * 342.19459 * 16 15 13 44 44 H 1.09002 * 109.32712 * 222.73608 * 16 15 13 45 45 H 1.09006 * 109.00903 * 297.69051 * 17 16 15 46 46 H 1.08996 * 109.01377 * 178.90849 * 17 16 15 47 47 H 1.09003 * 109.76932 * 162.05353 * 18 17 16 48 48 H 1.09001 * 109.80860 * 41.30640 * 18 17 16 49 49 H 0.96996 * 120.00256 * 6.45006 * 23 22 20 50 50 H 1.09002 * 109.47254 * 80.35102 * 28 19 18 51 51 H 1.08994 * 109.47948 * 200.38738 * 28 19 18 52 52 H 1.08998 * 108.87592 * 31.46751 * 29 15 13 53 53 H 1.09002 * 108.87497 * 150.01109 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.2000 0.1830 -2.2940 6 6 2.7089 -0.6406 -3.4788 7 1 2.0211 -1.4639 -3.6715 8 6 2.7979 0.2513 -4.7199 9 6 3.3647 -0.5645 -5.8859 10 6 4.7275 -1.1346 -5.4809 11 6 4.5640 -1.9730 -4.2105 12 8 4.0041 -1.1624 -3.1752 13 6 2.0323 -0.7105 1.2304 14 8 2.6252 -1.7630 1.1234 15 7 1.8227 -0.1762 2.4499 16 6 1.1660 1.1465 2.5757 17 6 -0.2413 0.9833 2.9729 18 6 -0.3759 0.2246 4.3039 19 7 -0.1933 -1.1731 4.0368 20 6 -1.2745 -1.9214 3.6542 21 1 -2.1053 -1.4510 3.1493 22 6 -1.3027 -3.2845 3.9152 23 7 -0.6555 -3.7691 4.9538 24 14 -2.2590 -4.4309 2.7926 25 1 -1.7152 -4.3408 1.4137 26 1 -3.6909 -4.0371 2.7866 27 1 -2.1319 -5.8260 3.2852 28 6 1.1323 -1.8375 4.1681 29 6 2.2354 -0.8894 3.6262 30 1 -0.3634 0.7712 0.6792 31 1 -0.3633 0.2026 -1.0075 32 1 -0.3634 -0.9739 0.3283 33 1 1.2537 0.6547 -2.5589 34 1 2.9319 0.9513 -2.0449 35 1 1.8036 0.6150 -4.9791 36 1 3.4530 1.0978 -4.5139 37 1 2.6838 -1.3816 -6.1241 38 1 3.4816 0.0788 -6.7580 39 1 5.1131 -1.7621 -6.2844 40 1 5.4228 -0.3167 -5.2918 41 1 3.9006 -2.8138 -4.4127 42 1 5.5378 -2.3462 -3.8934 43 1 1.2127 1.6650 1.6181 44 1 1.6870 1.7378 3.3287 45 1 -0.7681 0.4310 2.1947 46 1 -0.6971 1.9678 3.0778 47 1 -1.3669 0.3929 4.7256 48 1 0.3856 0.5685 5.0038 49 1 -0.2375 -3.1669 5.5890 50 1 1.3242 -2.0615 5.2174 51 1 1.1336 -2.7631 3.5924 52 1 3.1214 -1.4781 3.3890 53 1 2.4889 -0.1693 4.4043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198351641.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -120.782296 kcal Electronic energy + Delta-G solvation = -32174.980966 eV Core-core repulsion = 28046.781193 eV Total energy + Delta-G solvation = -4128.199772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55332 -40.46034 -39.07984 -38.24349 -36.36627 -34.56975 -34.13253 -33.69490 -32.84822 -31.62438 -29.38333 -28.02721 -26.94195 -26.08537 -25.14574 -24.59769 -23.40994 -23.14138 -21.47219 -21.20045 -19.88281 -19.30446 -18.52170 -18.06097 -17.59138 -17.01140 -16.95953 -16.55570 -16.18407 -16.04003 -15.84304 -15.58855 -15.43079 -15.29293 -15.04909 -14.81311 -14.46666 -14.35230 -13.99991 -13.83484 -13.62976 -13.54771 -13.41199 -13.21382 -13.05514 -12.86651 -12.67268 -12.39286 -12.27223 -12.18009 -12.07506 -12.02960 -11.99437 -11.94719 -11.75260 -11.59395 -11.28441 -11.21253 -10.93074 -10.45581 -10.39855 -10.37134 -9.62863 -8.87451 -8.21073 -5.34248 1.47538 1.56063 1.58680 1.73732 1.89089 2.62269 2.73860 2.80906 3.18786 3.42360 3.58909 3.71912 3.84006 3.90357 3.92700 3.98602 4.03261 4.07469 4.14082 4.15110 4.18760 4.28101 4.38338 4.40753 4.47317 4.51622 4.61596 4.63413 4.66651 4.70125 4.70550 4.77775 4.85288 4.88347 4.91437 4.95102 5.04111 5.04948 5.09618 5.14818 5.16242 5.19619 5.22702 5.36286 5.55627 5.75165 5.89448 6.09772 6.31770 6.41868 6.47492 7.14830 7.24374 7.82146 8.26326 9.01762 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003093 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.751138 B = 9051.159992 C = 9797.302504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 H 0.122 0.878 4 O -0.388 6.388 5 C 0.060 3.940 6 C 0.085 3.915 7 H 0.051 0.949 8 C -0.139 4.139 9 C -0.122 4.122 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.402 6.402 13 C 0.502 3.498 14 O -0.585 6.585 15 N -0.583 5.583 16 C 0.113 3.887 17 C -0.172 4.172 18 C 0.154 3.846 19 N -0.604 5.604 20 C -0.345 4.345 21 H 0.050 0.950 22 C -0.073 4.073 23 N -0.942 5.942 24 Si 1.092 2.908 25 H -0.298 1.298 26 H -0.265 1.265 27 H -0.294 1.294 28 C 0.152 3.848 29 C 0.111 3.889 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.051 0.949 49 H 0.255 0.745 50 H 0.018 0.982 51 H 0.012 0.988 52 H 0.058 0.942 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 18.105 -19.392 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.139 0.861 4 O -0.307 6.307 5 C -0.016 4.016 6 C 0.028 3.972 7 H 0.069 0.931 8 C -0.177 4.177 9 C -0.160 4.160 10 C -0.188 4.188 11 C -0.027 4.027 12 O -0.322 6.322 13 C 0.291 3.709 14 O -0.464 6.464 15 N -0.315 5.315 16 C -0.007 4.007 17 C -0.212 4.212 18 C 0.028 3.972 19 N -0.328 5.328 20 C -0.475 4.475 21 H 0.068 0.932 22 C -0.270 4.270 23 N -0.584 5.584 24 Si 0.919 3.081 25 H -0.226 1.226 26 H -0.191 1.191 27 H -0.220 1.220 28 C 0.025 3.975 29 C -0.015 4.015 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.121 0.879 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.031 0.969 52 H 0.077 0.923 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.954 15.852 -19.566 26.124 hybrid contribution 0.135 0.644 0.668 0.938 sum 7.090 16.496 -18.898 26.067 Atomic orbital electron populations 1.22468 0.92485 1.02833 1.04677 1.21911 0.95514 0.96575 0.83665 0.86099 1.88104 1.86773 1.35821 1.20020 1.22913 1.01010 0.92628 0.85013 1.22239 0.84660 0.96159 0.94166 0.93124 1.22102 1.03649 0.98506 0.93450 1.21614 0.96189 1.00098 0.98068 1.22166 0.98493 1.00685 0.97492 1.22744 0.98806 0.92774 0.88339 1.88003 1.32941 1.68381 1.42852 1.21156 0.78574 0.85217 0.85943 1.90658 1.43484 1.25194 1.87097 1.47456 1.59012 1.20857 1.04193 1.21190 0.93286 0.81851 1.04404 1.21961 0.97259 1.01846 1.00181 1.20519 0.98711 0.83044 0.94926 1.43873 1.03237 1.05828 1.79831 1.20011 0.99779 0.93481 1.34226 0.93191 1.26736 1.02381 0.98640 0.99289 1.70891 1.38489 1.38475 1.10565 0.83156 0.75844 0.74882 0.74224 1.22584 1.19074 1.22032 1.21821 0.85348 0.94282 0.96032 1.21511 0.96147 0.96104 0.87705 0.87829 0.88984 0.95447 0.88594 0.91516 0.88579 0.90260 0.91755 0.89244 0.89258 0.91012 0.93712 0.88812 0.87530 0.88215 0.92247 0.87942 0.94576 0.93081 0.93510 0.96407 0.96885 0.92325 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 8.43 71.98 0.61 -4.03 16 2 C 0.08 2.51 2.30 29.85 0.07 2.58 16 3 H 0.12 2.46 6.61 -2.39 -0.02 2.45 16 4 O -0.39 -13.17 9.50 -125.64 -1.19 -14.36 16 5 C 0.06 1.34 5.37 71.98 0.39 1.73 16 6 C 0.09 1.93 2.93 30.63 0.09 2.02 16 7 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.14 -1.94 5.42 30.68 0.17 -1.77 16 9 C -0.12 -1.52 6.03 30.71 0.19 -1.33 16 10 C -0.15 -2.15 6.14 30.68 0.19 -1.96 16 11 C 0.05 1.05 6.84 72.01 0.49 1.54 16 12 O -0.40 -11.41 10.37 -144.42 -1.50 -12.91 16 13 C 0.50 20.26 6.96 87.66 0.61 20.87 16 14 O -0.58 -30.54 16.03 15.93 0.26 -30.29 16 15 N -0.58 -20.36 2.46 -830.50 -2.04 -22.40 16 16 C 0.11 2.64 5.01 84.22 0.42 3.06 16 17 C -0.17 -4.72 5.07 29.04 0.15 -4.57 16 18 C 0.15 5.71 5.63 87.21 0.49 6.20 16 19 N -0.60 -29.48 2.38 -697.38 -1.66 -31.14 16 20 C -0.34 -19.40 9.09 84.03 0.76 -18.64 16 21 H 0.05 2.80 7.98 -2.91 -0.02 2.77 16 22 C -0.07 -4.37 4.53 84.86 0.38 -3.99 16 23 N -0.94 -60.17 12.63 21.65 0.27 -59.89 16 24 Si 1.09 55.20 30.00 68.60 2.06 57.26 16 25 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 28 C 0.15 7.56 5.13 86.69 0.44 8.00 16 29 C 0.11 4.33 5.29 87.67 0.46 4.79 16 30 H 0.10 2.38 4.28 -2.39 -0.01 2.37 16 31 H 0.09 1.98 7.67 -2.39 -0.02 1.96 16 32 H 0.03 1.03 8.00 -2.38 -0.02 1.01 16 33 H 0.10 1.46 7.72 -2.39 -0.02 1.45 16 34 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.11 1.76 5.31 -2.39 -0.01 1.75 16 44 H 0.10 1.80 8.06 -2.39 -0.02 1.78 16 45 H 0.06 1.95 5.14 -2.38 -0.01 1.94 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.40 8.02 -2.39 -0.02 1.38 16 48 H 0.05 1.68 7.59 -2.39 -0.02 1.67 16 49 H 0.25 16.34 6.62 -92.71 -0.61 15.73 16 50 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 51 H 0.01 0.77 7.00 -2.39 -0.02 0.75 16 52 H 0.06 2.47 7.32 -2.39 -0.02 2.45 16 53 H 0.10 3.05 7.73 -2.39 -0.02 3.03 16 Total: -1.00 -86.54 396.61 3.14 -83.40 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.04 Total: 15.84 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.91 Total: 14.50 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.43 Total: -113.44 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -2.44 Total: -57.56 kcal Atomic # 14 Polarization: 55.20 SS G_CDS: 2.06 Total: 57.26 kcal Total: -86.54 3.14 -83.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198351641.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.385 kcal (2) G-P(sol) polarization free energy of solvation -86.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds