Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46995 * 2 1 4 4 O 1.42902 * 109.47164 * 119.99702 * 2 1 3 5 5 C 1.42907 * 114.00051 * 270.00636 * 4 2 1 6 6 C 1.52998 * 109.46959 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.48260 * 54.97340 * 6 5 4 8 8 C 1.53094 * 109.48105 * 175.00039 * 6 5 4 9 9 C 1.53168 * 109.16643 * 177.58862 * 8 6 5 10 10 C 1.53184 * 109.03513 * 303.01723 * 9 8 6 11 11 C 1.53091 * 109.16243 * 56.98282 * 10 9 8 12 12 O 1.42905 * 109.41300 * 302.38713 * 11 10 9 13 13 C 1.50694 * 109.47406 * 239.99893 * 2 1 3 14 14 O 1.21289 * 119.99979 * 252.42746 * 13 2 1 15 15 N 1.34771 * 120.00299 * 72.43097 * 13 2 1 16 16 C 1.46932 * 120.62968 * 355.23996 * 15 13 2 17 17 C 1.53197 * 108.77365 * 126.36967 * 16 15 13 18 18 C 1.53041 * 109.31367 * 54.63842 * 17 16 15 19 19 N 1.46494 * 109.45959 * 178.62489 * 18 17 16 20 20 C 1.36933 * 120.00332 * 205.02439 * 19 18 17 21 21 H 1.08008 * 119.99535 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00602 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00240 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47037 * 90.00270 * 24 22 20 26 26 H 1.48495 * 109.47382 * 209.99715 * 24 22 20 27 27 H 1.48495 * 109.47309 * 330.00293 * 24 22 20 28 28 C 1.53042 * 109.52327 * 298.64097 * 18 17 16 29 29 C 1.46923 * 120.63638 * 175.21955 * 15 13 2 30 30 H 1.09000 * 109.47177 * 185.38014 * 1 2 3 31 31 H 1.09000 * 109.47889 * 305.38426 * 1 2 3 32 32 H 1.09004 * 109.47449 * 65.38509 * 1 2 3 33 33 H 1.09003 * 109.46663 * 299.99436 * 5 4 2 34 34 H 1.08996 * 109.47084 * 59.99853 * 5 4 2 35 35 H 1.09006 * 109.51481 * 297.49557 * 8 6 5 36 36 H 1.09006 * 109.52181 * 57.61603 * 8 6 5 37 37 H 1.09005 * 109.54447 * 62.88101 * 9 8 6 38 38 H 1.09002 * 109.54794 * 183.05926 * 9 8 6 39 39 H 1.09007 * 109.51966 * 176.88666 * 10 9 8 40 40 H 1.08997 * 109.52149 * 297.00936 * 10 9 8 41 41 H 1.08996 * 109.48455 * 62.37476 * 11 10 9 42 42 H 1.09005 * 109.47779 * 182.41060 * 11 10 9 43 43 H 1.09002 * 109.58299 * 6.59115 * 16 15 13 44 44 H 1.08995 * 109.70801 * 246.22881 * 16 15 13 45 45 H 1.09003 * 109.49798 * 294.68206 * 17 16 15 46 46 H 1.09000 * 109.52061 * 174.60715 * 17 16 15 47 47 H 1.09003 * 109.45612 * 58.65293 * 18 17 16 48 48 H 0.97005 * 119.99795 * 25.02864 * 19 18 17 49 49 H 0.96992 * 119.99676 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.49204 * 181.31157 * 28 18 17 51 51 H 1.08994 * 109.49655 * 301.40410 * 28 18 17 52 52 H 1.09002 * 109.58681 * 353.41826 * 29 15 13 53 53 H 1.09003 * 109.59081 * 113.69929 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2942 6 6 2.7089 -0.6404 3.4789 7 1 3.6077 -1.1827 3.1853 8 6 3.0349 0.2935 4.6474 9 6 3.4862 -0.5427 5.8487 10 6 2.3857 -1.5492 6.1986 11 6 2.0848 -2.4120 4.9703 12 8 1.7010 -1.5703 3.8810 13 6 2.0323 -0.7104 -1.2304 14 8 2.5335 -1.8106 -1.1333 15 7 1.9248 -0.1232 -2.4387 16 6 1.2278 1.1617 -2.5873 17 6 2.1601 2.1493 -3.2959 18 6 2.6378 1.5373 -4.6148 19 7 3.5036 2.4923 -5.3107 20 6 3.6396 2.4275 -6.6718 21 1 3.1082 1.6724 -7.2322 22 6 4.4603 3.3321 -7.3312 23 7 4.5906 3.2700 -8.6395 24 14 5.3788 4.6384 -6.3621 25 1 6.7060 4.1110 -5.9548 26 1 5.5641 5.8442 -7.2087 27 1 4.5968 4.9984 -5.1521 28 6 3.4206 0.2536 -4.3290 29 6 2.5028 -0.7554 -3.6324 30 1 -0.3633 -1.0231 0.0964 31 1 -0.3635 0.5950 0.8378 32 1 -0.3634 0.4280 -0.9343 33 1 2.9318 0.9514 2.0451 34 1 1.2536 0.6547 2.5589 35 1 3.8345 0.9749 4.3567 36 1 2.1469 0.8667 4.9142 37 1 4.4025 -1.0770 5.5975 38 1 3.6678 0.1120 6.7011 39 1 2.7211 -2.1856 7.0175 40 1 1.4847 -1.0141 6.4986 41 1 2.9754 -2.9776 4.6963 42 1 1.2726 -3.1015 5.2006 43 1 0.9638 1.5500 -1.6036 44 1 0.3237 1.0230 -3.1801 45 1 3.0199 2.3587 -2.6594 46 1 1.6231 3.0760 -3.4983 47 1 1.7760 1.3054 -5.2406 48 1 3.9806 3.1706 -4.8074 49 1 5.1639 3.9024 -9.1003 50 1 3.7804 -0.1694 -5.2669 51 1 4.2685 0.4808 -3.6829 52 1 3.0800 -1.6321 -3.3384 53 1 1.7037 -1.0547 -4.3106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204047683.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -142.981724 kcal Electronic energy + Delta-G solvation = -30587.297103 eV Core-core repulsion = 26458.134692 eV Total energy + Delta-G solvation = -4129.162411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50272 -40.45082 -39.15839 -38.24081 -36.30112 -34.56303 -34.17287 -33.52816 -32.53828 -31.68669 -31.04321 -28.00896 -26.91563 -25.47661 -24.94611 -24.09600 -23.59882 -23.14044 -21.71361 -21.19511 -20.40675 -19.47660 -18.51592 -17.82226 -17.50002 -17.06445 -16.81493 -16.68841 -16.32596 -15.86901 -15.83252 -15.52082 -15.38678 -15.17496 -15.05323 -14.88070 -14.61269 -14.31713 -14.19069 -13.86286 -13.65030 -13.56342 -13.50834 -13.26509 -13.05543 -12.93186 -12.80460 -12.60629 -12.46033 -12.20377 -12.18246 -12.03986 -11.98602 -11.93824 -11.77520 -11.60361 -11.42096 -11.27540 -10.95721 -10.88738 -10.48465 -10.39027 -9.72749 -9.30260 -8.00539 -5.33967 1.38084 1.42190 1.49265 1.50435 1.71916 2.49907 2.69586 2.79760 3.30609 3.40367 3.54774 3.76202 3.82401 3.90420 3.91364 3.95094 4.03380 4.04614 4.09245 4.14192 4.16572 4.29155 4.32026 4.38865 4.40497 4.47855 4.58129 4.63688 4.64477 4.65971 4.73302 4.79444 4.83025 4.83953 4.85683 4.92069 4.96140 5.04701 5.09869 5.10933 5.15807 5.22961 5.27046 5.36318 5.44810 5.56798 5.79566 6.06354 6.23499 6.29643 6.40151 7.09935 7.11105 7.86174 8.04862 9.20891 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.002092 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.197608 B =13383.454497 C =14110.437855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.383 6.383 5 C 0.061 3.939 6 C 0.088 3.912 7 H 0.049 0.951 8 C -0.143 4.143 9 C -0.124 4.124 10 C -0.152 4.152 11 C 0.052 3.948 12 O -0.396 6.396 13 C 0.510 3.490 14 O -0.578 6.578 15 N -0.603 5.603 16 C 0.107 3.893 17 C -0.135 4.135 18 C 0.175 3.825 19 N -0.750 5.750 20 C -0.226 4.226 21 H 0.057 0.943 22 C -0.068 4.068 23 N -0.985 5.985 24 Si 0.955 3.045 25 H -0.285 1.285 26 H -0.298 1.298 27 H -0.245 1.245 28 C -0.139 4.139 29 C 0.122 3.878 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.365 0.635 49 H 0.256 0.744 50 H 0.053 0.947 51 H 0.049 0.951 52 H 0.071 0.929 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 -3.509 33.056 34.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.302 6.302 5 C -0.015 4.015 6 C 0.031 3.969 7 H 0.067 0.933 8 C -0.180 4.180 9 C -0.161 4.161 10 C -0.190 4.190 11 C -0.025 4.025 12 O -0.315 6.315 13 C 0.299 3.701 14 O -0.457 6.457 15 N -0.337 5.337 16 C -0.015 4.015 17 C -0.174 4.174 18 C 0.067 3.933 19 N -0.393 5.393 20 C -0.357 4.357 21 H 0.075 0.925 22 C -0.259 4.259 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.169 1.169 28 C -0.180 4.180 29 C -0.001 4.001 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.069 0.931 48 H 0.198 0.802 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.090 0.910 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.239 -4.359 32.817 34.370 hybrid contribution 1.348 0.600 -0.407 1.531 sum -7.890 -3.759 32.410 33.568 Atomic orbital electron populations 1.22327 0.91514 1.03584 1.05153 1.22020 0.96629 0.96478 0.83600 0.86782 1.88079 1.86887 1.35583 1.19679 1.22862 1.01790 0.92391 0.84410 1.22163 0.90880 0.90671 0.93232 0.93342 1.22112 1.03142 0.98173 0.94589 1.21613 0.98150 0.98142 0.98224 1.22177 0.99856 0.98869 0.98092 1.22739 1.00928 0.92552 0.86262 1.87963 1.40789 1.50829 1.51944 1.21066 0.78148 0.85788 0.85141 1.90674 1.46391 1.22127 1.86488 1.48178 1.55691 1.23253 1.06562 1.22154 0.94924 0.81072 1.03350 1.22182 1.00328 0.99450 0.95463 1.20417 0.91916 0.88283 0.92703 1.42797 1.55896 1.37196 1.03402 1.19023 1.21463 1.11788 0.83426 0.92524 1.25523 1.01823 1.02232 0.96336 1.69890 1.44264 1.40776 1.08671 0.85407 0.78880 0.78722 0.78733 1.21207 1.22529 1.16898 1.22426 0.98670 0.97499 0.99373 1.21474 0.97145 0.95600 0.85885 0.92888 0.88896 0.88725 0.89775 0.90647 0.89244 0.90091 0.91933 0.89673 0.89424 0.90913 0.93703 0.88199 0.86210 0.88828 0.91477 0.88827 0.93119 0.80177 0.93509 0.92802 0.93178 0.91036 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.10 71.98 0.65 -1.81 16 2 C 0.07 1.47 2.28 29.84 0.07 1.54 16 3 H 0.11 1.54 6.88 -2.39 -0.02 1.52 16 4 O -0.38 -9.59 9.52 -125.78 -1.20 -10.79 16 5 C 0.06 1.02 5.41 71.98 0.39 1.41 16 6 C 0.09 1.55 2.93 30.62 0.09 1.64 16 7 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 8 C -0.14 -1.56 5.42 30.68 0.17 -1.40 16 9 C -0.12 -1.21 6.03 30.71 0.19 -1.02 16 10 C -0.15 -1.57 6.14 30.69 0.19 -1.38 16 11 C 0.05 0.78 6.84 72.01 0.49 1.28 16 12 O -0.40 -8.40 10.37 -144.42 -1.50 -9.90 16 13 C 0.51 14.37 7.04 87.66 0.62 14.99 16 14 O -0.58 -22.23 15.98 15.68 0.25 -21.98 16 15 N -0.60 -14.98 2.97 -818.96 -2.43 -17.41 16 16 C 0.11 1.88 5.20 86.36 0.45 2.33 16 17 C -0.14 -3.18 5.55 30.67 0.17 -3.01 16 18 C 0.17 5.95 2.73 45.02 0.12 6.07 16 19 N -0.75 -32.92 4.92 -322.81 -1.59 -34.51 16 20 C -0.23 -12.47 10.41 84.03 0.87 -11.60 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 23 N -0.99 -62.72 13.97 21.65 0.30 -62.42 16 24 Si 0.96 44.53 27.74 68.60 1.90 46.43 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 27 H -0.24 -9.96 6.52 99.48 0.65 -9.31 16 28 C -0.14 -4.69 5.66 30.66 0.17 -4.51 16 29 C 0.12 3.55 6.42 86.35 0.55 4.11 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.95 8.00 -2.39 -0.02 0.93 16 32 H 0.09 1.02 5.96 -2.39 -0.01 1.00 16 33 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.08 0.99 8.00 -2.39 -0.02 0.97 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 43 H 0.12 1.28 4.73 -2.39 -0.01 1.27 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 48 H 0.37 15.32 5.66 -92.70 -0.52 14.80 16 49 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 50 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.07 2.32 7.03 -2.39 -0.02 2.30 16 53 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -79.85 407.93 1.70 -78.15 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.30 Total: 27.28 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.66 Total: 5.15 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -3.72 Total: -114.34 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -2.44 Total: -42.68 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -79.85 1.70 -78.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204047683.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.829 kcal (2) G-P(sol) polarization free energy of solvation -79.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds