Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.82538 * 305.70606 * 6 5 4 8 8 C 1.54385 * 109.83407 * 184.81565 * 6 5 4 9 9 C 1.55446 * 102.18803 * 219.18238 * 8 6 5 10 10 C 1.54950 * 100.98975 * 34.03637 * 9 8 6 11 11 O 1.43245 * 109.83212 * 66.58686 * 6 5 4 12 12 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 13 13 O 1.21284 * 120.00340 * 244.99786 * 12 2 1 14 14 N 1.34783 * 119.99696 * 65.00334 * 12 2 1 15 15 C 1.46923 * 120.62996 * 359.71481 * 14 12 2 16 16 C 1.53627 * 108.54010 * 126.37024 * 15 14 12 17 17 C 1.53036 * 109.23843 * 54.85860 * 16 15 14 18 18 C 1.53002 * 109.44927 * 178.49409 * 17 16 15 19 19 N 1.46494 * 109.47274 * 295.06182 * 18 17 16 20 20 C 1.36940 * 120.00095 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00131 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99958 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99726 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00028 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47391 * 89.99711 * 24 22 20 26 26 H 1.48499 * 109.46882 * 210.00386 * 24 22 20 27 27 H 1.48506 * 109.46854 * 329.99984 * 24 22 20 28 28 C 1.53040 * 109.54036 * 298.50670 * 17 16 15 29 29 C 1.46924 * 120.62894 * 180.02562 * 14 12 2 30 30 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 34 34 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 35 35 H 1.09000 * 110.84670 * 337.32271 * 8 6 5 36 36 H 1.08998 * 110.84705 * 100.93882 * 8 6 5 37 37 H 1.09001 * 111.06022 * 276.12476 * 9 8 6 38 38 H 1.08996 * 111.18295 * 152.00684 * 9 8 6 39 39 H 1.09001 * 110.30904 * 204.68976 * 10 9 8 40 40 H 1.09005 * 110.39454 * 82.56416 * 10 9 8 41 41 H 1.09002 * 109.58691 * 246.20484 * 15 14 12 42 42 H 1.09006 * 109.58773 * 6.63312 * 15 14 12 43 43 H 1.09002 * 109.63669 * 294.86439 * 16 15 14 44 44 H 1.08998 * 109.43035 * 174.72052 * 16 15 14 45 45 H 1.08997 * 109.46460 * 58.53336 * 17 16 15 46 46 H 1.09009 * 109.46705 * 55.06249 * 18 17 16 47 47 H 1.08996 * 109.47590 * 175.05583 * 18 17 16 48 48 H 0.97000 * 119.99911 * 359.97438 * 19 18 17 49 49 H 0.97005 * 119.99399 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.50067 * 301.41829 * 28 17 16 51 51 H 1.09001 * 109.49862 * 181.31699 * 28 17 16 52 52 H 1.09007 * 109.58610 * 353.36136 * 29 14 12 53 53 H 1.08990 * 109.58988 * 113.79564 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7091 -0.6405 3.4789 7 1 2.0315 -1.4729 3.6688 8 6 2.8064 0.2527 4.7343 9 6 4.1207 -0.2508 5.3943 10 6 4.9627 -0.6051 4.1427 11 8 4.0224 -1.1379 3.1965 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7467 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 1.0363 1.0570 -2.6004 16 6 1.8683 2.0328 -3.4464 17 6 2.2392 1.3621 -4.7710 18 6 3.0362 2.3431 -5.6332 19 7 2.1838 3.4777 -5.9968 20 6 2.6848 4.4900 -6.7711 21 1 3.7084 4.4521 -7.1133 22 6 1.8772 5.5653 -7.1153 23 7 2.3589 6.5385 -7.8590 24 14 0.1073 5.6318 -6.5216 25 1 0.0505 6.3280 -5.2111 26 1 -0.7190 6.3697 -7.5105 27 1 -0.4166 4.2504 -6.3713 28 6 3.0886 0.1192 -4.4952 29 6 2.2747 -0.8755 -3.6609 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9320 0.9514 2.0450 34 1 1.2538 0.6547 2.5589 35 1 2.8896 1.3036 4.4572 36 1 1.9531 0.0904 5.3929 37 1 3.9380 -1.1332 6.0075 38 1 4.5960 0.5381 5.9771 39 1 5.7142 -1.3542 4.3921 40 1 5.4394 0.2887 3.7401 41 1 0.0880 0.8544 -3.0982 42 1 0.8502 1.4903 -1.6176 43 1 2.7770 2.3017 -2.9077 44 1 1.2831 2.9308 -3.6447 45 1 1.3304 1.0713 -5.2978 46 1 3.8990 2.7020 -5.0719 47 1 3.3756 1.8389 -6.5379 48 1 1.2645 3.5118 -5.6892 49 1 1.7944 7.2897 -8.0998 50 1 3.9857 0.4061 -3.9467 51 1 3.3719 -0.3447 -5.4400 52 1 2.9062 -1.7178 -3.3780 53 1 1.4253 -1.2322 -4.2432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206967396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = -138.950842 kcal Electronic energy + Delta-G solvation = -30529.306964 eV Core-core repulsion = 26400.319345 eV Total energy + Delta-G solvation = -4128.987619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55658 -40.52689 -39.26778 -38.27620 -36.70533 -34.70607 -33.51252 -33.12444 -32.41264 -31.83003 -30.85852 -28.54665 -26.69481 -25.83616 -24.50807 -24.36515 -22.95114 -22.60872 -22.17566 -21.54258 -20.27743 -19.60307 -18.46308 -18.00757 -17.76768 -17.08575 -16.83438 -16.64133 -16.28287 -16.07965 -15.85093 -15.62974 -15.47837 -15.07019 -14.97613 -14.73119 -14.48829 -14.30745 -14.16516 -14.00214 -13.74738 -13.58041 -13.30769 -13.23626 -13.08844 -12.84658 -12.75336 -12.67271 -12.44009 -12.25073 -12.18627 -12.14567 -12.09652 -11.87032 -11.72198 -11.69063 -11.48810 -11.40115 -10.98343 -10.91822 -10.52061 -10.46363 -9.70662 -9.28005 -8.01011 -5.35096 1.39062 1.44897 1.50659 1.52437 1.70008 2.51033 2.65374 2.95436 3.30021 3.38052 3.54132 3.55947 3.73011 3.81708 3.83436 3.88999 3.93327 4.02716 4.06137 4.14248 4.15238 4.23028 4.33429 4.36048 4.38651 4.43429 4.54030 4.60389 4.65997 4.69710 4.72084 4.78482 4.80832 4.83976 4.88091 4.90321 4.92895 5.01564 5.02185 5.07100 5.13116 5.18912 5.24046 5.24221 5.48714 5.53041 5.76914 5.98641 6.17510 6.22500 6.35830 7.09883 7.10076 7.84982 8.06845 9.20703 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.002179 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.140945 B =12847.676681 C =13384.017460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.104 0.896 4 O -0.382 6.382 5 C 0.045 3.955 6 C 0.074 3.926 7 H 0.080 0.920 8 C -0.140 4.140 9 C -0.149 4.149 10 C 0.034 3.966 11 O -0.406 6.406 12 C 0.509 3.491 13 O -0.575 6.575 14 N -0.604 5.604 15 C 0.101 3.899 16 C -0.127 4.127 17 C -0.087 4.087 18 C 0.159 3.841 19 N -0.753 5.753 20 C -0.237 4.237 21 H 0.049 0.951 22 C -0.070 4.070 23 N -0.987 5.987 24 Si 0.960 3.040 25 H -0.272 1.272 26 H -0.299 1.299 27 H -0.244 1.244 28 C -0.117 4.117 29 C 0.115 3.885 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.056 0.944 51 H 0.087 0.913 52 H 0.076 0.924 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -14.335 28.534 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.122 0.878 4 O -0.301 6.301 5 C -0.031 4.031 6 C 0.016 3.984 7 H 0.098 0.902 8 C -0.177 4.177 9 C -0.186 4.186 10 C -0.042 4.042 11 O -0.326 6.326 12 C 0.297 3.703 13 O -0.454 6.454 14 N -0.338 5.338 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.106 4.106 18 C 0.033 3.967 19 N -0.399 5.399 20 C -0.368 4.368 21 H 0.067 0.933 22 C -0.261 4.261 23 N -0.637 5.637 24 Si 0.786 3.214 25 H -0.198 1.198 26 H -0.226 1.226 27 H -0.168 1.168 28 C -0.155 4.155 29 C -0.007 4.007 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.203 0.797 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.105 0.895 52 H 0.095 0.905 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.317 -15.132 28.323 32.549 hybrid contribution -0.336 0.832 -0.384 0.976 sum -5.653 -14.300 27.939 31.891 Atomic orbital electron populations 1.22419 0.91184 1.03808 1.05480 1.22012 0.96713 0.96281 0.84098 0.87798 1.88067 1.86861 1.35339 1.19810 1.23288 1.00971 0.92858 0.86013 1.22941 0.84951 0.96921 0.93549 0.90160 1.23154 0.99818 1.00109 0.94660 1.23291 0.95067 1.02985 0.97265 1.23625 0.92747 0.99109 0.88733 1.88570 1.18073 1.70790 1.55215 1.21004 0.78939 0.85012 0.85297 1.90685 1.42157 1.25803 1.86736 1.48163 1.55097 1.25324 1.05167 1.22322 0.94775 0.82546 1.02383 1.22014 1.00748 0.98415 0.95381 1.21251 0.99118 0.94450 0.95778 1.20791 0.92981 0.87160 0.95758 1.42646 1.12097 1.22679 1.62506 1.19023 0.96693 0.98180 1.22949 0.93276 1.25630 1.03340 0.96435 1.00656 1.69914 1.38021 1.12099 1.43691 0.85335 0.79497 0.78857 0.77682 1.19791 1.22618 1.16840 1.21818 0.98051 0.95115 1.00534 1.21620 0.99122 0.95129 0.84820 0.88513 0.92368 0.88889 0.92896 0.89002 0.89037 0.87498 0.89808 0.87723 0.89436 0.92141 0.88630 0.87085 0.92137 0.90457 0.89947 0.96548 0.96153 0.79706 0.93371 0.92518 0.89457 0.90538 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.10 71.98 0.65 -1.58 16 2 C 0.07 1.39 2.30 29.85 0.07 1.46 16 3 H 0.10 1.61 7.09 -2.39 -0.02 1.59 16 4 O -0.38 -9.52 9.51 -126.48 -1.20 -10.72 16 5 C 0.05 0.75 5.28 71.98 0.38 1.13 16 6 C 0.07 1.24 3.81 31.06 0.12 1.36 16 7 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 8 C -0.14 -1.19 6.56 31.91 0.21 -0.98 16 9 C -0.15 -1.29 7.16 32.10 0.23 -1.06 16 10 C 0.03 0.52 7.78 72.65 0.57 1.08 16 11 O -0.41 -9.72 11.00 -146.65 -1.61 -11.33 16 12 C 0.51 13.68 7.12 87.66 0.62 14.31 16 13 O -0.57 -21.27 15.92 15.95 0.25 -21.02 16 14 N -0.60 -13.29 2.97 -817.97 -2.43 -15.72 16 15 C 0.10 1.69 5.00 86.51 0.43 2.13 16 16 C -0.13 -2.91 5.26 30.82 0.16 -2.75 16 17 C -0.09 -2.27 2.19 -10.77 -0.02 -2.29 16 18 C 0.16 5.82 5.65 86.38 0.49 6.31 16 19 N -0.75 -33.72 5.12 -343.45 -1.76 -35.48 16 20 C -0.24 -13.47 10.47 84.03 0.88 -12.59 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.99 -63.05 13.97 21.65 0.30 -62.75 16 24 Si 0.96 43.47 27.74 68.60 1.90 45.38 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 28 C -0.12 -2.71 5.36 30.69 0.16 -2.55 16 29 C 0.12 2.57 6.43 86.38 0.56 3.13 16 30 H 0.10 0.92 5.39 -2.39 -0.01 0.91 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 33 H 0.05 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 35 H 0.09 0.59 7.85 -2.39 -0.02 0.57 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 1.32 4.65 -2.38 -0.01 1.31 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.88 7.15 -2.39 -0.02 1.87 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.37 15.16 4.71 -92.71 -0.44 14.72 16 49 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 50 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.08 1.98 7.01 -2.38 -0.02 1.97 16 53 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -82.84 408.09 1.82 -81.02 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.39 Total: 27.11 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.98 Total: 3.51 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.88 Total: -113.95 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.56 Total: -43.07 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.38 kcal Total: -82.84 1.82 -81.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206967396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.931 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds