Wall clock time and date at job start Sat Apr 11 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.52998 * 109.47602 * 120.00430 * 2 1 3 5 5 O 1.42907 * 109.46957 * 64.99865 * 4 2 1 6 6 C 1.42896 * 113.99752 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47646 * 330.00039 * 6 5 4 8 8 C 1.52999 * 109.47069 * 90.00080 * 6 5 4 9 9 C 1.50704 * 109.46879 * 210.00229 * 6 5 4 10 10 O 1.21280 * 120.00005 * 359.97438 * 9 6 5 11 11 N 1.34780 * 119.99776 * 180.02562 * 9 6 5 12 12 C 1.46502 * 119.99903 * 179.97438 * 11 9 6 13 13 C 1.52996 * 109.47150 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.89844 * 59.48326 * 13 12 11 15 15 C 1.54468 * 109.83254 * 180.42183 * 13 12 11 16 16 C 1.55501 * 102.38949 * 140.87576 * 15 13 12 17 17 C 1.53884 * 100.76156 * 327.03162 * 16 15 13 18 18 C 1.52381 * 115.67693 * 263.23587 * 17 16 15 19 19 N 1.47280 * 87.69988 * 218.74034 * 18 17 16 20 20 C 1.36927 * 135.93628 * 206.14335 * 19 18 17 21 21 H 1.08006 * 120.00208 * 6.47422 * 20 19 18 22 22 C 1.38815 * 120.00352 * 186.47863 * 20 19 18 23 23 N 1.31617 * 119.99817 * 6.40804 * 22 20 19 24 24 Si 1.86799 * 120.00085 * 186.41286 * 22 20 19 25 25 H 1.48504 * 109.47051 * 265.01587 * 24 22 20 26 26 H 1.48494 * 109.47274 * 25.01873 * 24 22 20 27 27 H 1.48499 * 109.47191 * 145.01998 * 24 22 20 28 28 C 1.47278 * 88.12529 * 26.39809 * 19 18 17 29 29 O 1.42409 * 106.66622 * 34.97016 * 17 16 15 30 30 H 1.09004 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47156 * 299.99223 * 1 2 3 32 32 H 1.08999 * 109.47946 * 59.99553 * 1 2 3 33 33 H 1.09007 * 109.46756 * 240.00426 * 2 1 3 34 34 H 1.09002 * 109.47044 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46924 * 300.00502 * 3 2 1 36 36 H 1.08999 * 109.46374 * 60.00735 * 3 2 1 37 37 H 1.08998 * 109.47085 * 305.00204 * 4 2 1 38 38 H 1.08996 * 109.47182 * 184.99383 * 4 2 1 39 39 H 1.08993 * 109.47120 * 299.99419 * 8 6 5 40 40 H 1.09002 * 109.47415 * 60.00042 * 8 6 5 41 41 H 1.09008 * 109.46919 * 180.02562 * 8 6 5 42 42 H 0.96995 * 120.00040 * 359.97438 * 11 9 6 43 43 H 1.09003 * 109.47014 * 59.99166 * 12 11 9 44 44 H 1.09006 * 109.47102 * 299.99682 * 12 11 9 45 45 H 1.09006 * 110.82523 * 259.10510 * 15 13 12 46 46 H 1.08998 * 110.82448 * 22.45389 * 15 13 12 47 47 H 1.09000 * 111.16559 * 209.15185 * 16 15 13 48 48 H 1.09005 * 111.15860 * 84.90508 * 16 15 13 49 49 H 1.08998 * 113.51489 * 104.03632 * 18 17 16 50 50 H 1.08994 * 113.51549 * 333.44498 * 18 17 16 51 51 H 0.96991 * 120.00313 * 180.02562 * 23 22 20 52 52 H 1.09002 * 113.50990 * 88.31210 * 28 19 18 53 53 H 1.09001 * 113.50854 * 218.88821 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6620 -2.0983 1.1918 6 6 2.0915 -2.8662 2.3177 7 1 3.0166 -2.4463 2.7125 8 6 1.0120 -2.8302 3.4013 9 6 2.3287 -4.2923 1.8920 10 8 2.1473 -4.6189 0.7382 11 7 2.7414 -5.2050 2.7939 12 6 2.9715 -6.5914 2.3802 13 6 3.4315 -7.4136 3.5857 14 1 2.6713 -7.3849 4.3662 15 6 3.6868 -8.8753 3.1564 16 6 4.9600 -9.2442 3.9693 17 6 5.6810 -7.8853 4.0065 18 6 6.7596 -7.6809 2.9497 19 7 7.5530 -6.9876 3.9787 20 6 8.5307 -6.0289 3.9872 21 1 8.8083 -5.5325 3.0691 22 6 9.1652 -5.6951 5.1759 23 7 8.9188 -6.3847 6.2695 24 14 10.3685 -4.2671 5.2233 25 1 11.7508 -4.7783 5.0411 26 1 10.0462 -3.3118 4.1330 27 1 10.2651 -3.5760 6.5336 28 6 6.8397 -7.7808 4.9942 29 8 4.6681 -6.8877 4.0906 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3635 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6445 1.2949 39 1 0.8405 -1.7988 3.7092 40 1 0.0868 -3.2503 3.0067 41 1 1.3398 -3.4157 4.2604 42 1 2.8861 -4.9438 3.7167 43 1 3.7406 -6.6174 1.6082 44 1 2.0462 -7.0111 1.9854 45 1 2.8491 -9.5137 3.4374 46 1 3.8763 -8.9370 2.0848 47 1 5.5571 -9.9922 3.4476 48 1 4.7020 -9.5803 4.9736 49 1 6.4485 -7.0327 2.1305 50 1 7.2122 -8.6105 2.6048 51 1 9.3619 -6.1513 7.1002 52 1 7.3143 -8.7379 5.2106 53 1 6.5961 -7.2165 5.8944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273647154.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:02 Heat of formation + Delta-G solvation = -103.436415 kcal Electronic energy + Delta-G solvation = -30638.876385 eV Core-core repulsion = 26511.428786 eV Total energy + Delta-G solvation = -4127.447598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55185 -40.92147 -39.11748 -38.09742 -36.09607 -35.68154 -34.18214 -33.17523 -32.43456 -30.54499 -28.65881 -28.02540 -27.20405 -26.56324 -25.87001 -24.54750 -23.11219 -22.50482 -21.46476 -21.06340 -20.50427 -18.71904 -18.39963 -18.21952 -17.65644 -17.09102 -16.92625 -16.38351 -16.30188 -16.12239 -15.88012 -15.53534 -15.29700 -15.04142 -14.75185 -14.62274 -14.24680 -14.10492 -13.92510 -13.74998 -13.50355 -13.36479 -13.19776 -13.16134 -13.09085 -12.94570 -12.82722 -12.71255 -12.55279 -12.45157 -12.29721 -12.14969 -12.00694 -11.81584 -11.64456 -11.53548 -11.33300 -11.25089 -11.01915 -10.92937 -10.50031 -10.25527 -10.13875 -8.94895 -7.95108 -5.25663 1.42277 1.44318 1.52424 1.53886 1.82410 2.44872 2.69334 2.92121 3.28513 3.42924 3.52929 3.64190 3.74954 3.84772 3.87213 3.91628 3.95746 3.96764 4.07359 4.20144 4.22859 4.42902 4.44105 4.55586 4.57848 4.59261 4.67921 4.70190 4.71986 4.79354 4.81161 4.83241 4.90788 4.97672 4.98949 5.00373 5.03005 5.12935 5.15406 5.17771 5.21380 5.26332 5.32159 5.35842 5.38340 5.42519 5.48575 5.88925 6.07707 6.35689 6.49718 6.88420 7.16177 7.56468 8.58350 9.24249 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.002890 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.069478 B = 9687.312301 C =12055.867539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.141 4.141 4 C 0.057 3.943 5 O -0.381 6.381 6 C 0.069 3.931 7 H 0.098 0.902 8 C -0.161 4.161 9 C 0.509 3.491 10 O -0.575 6.575 11 N -0.710 5.710 12 C 0.116 3.884 13 C 0.062 3.938 14 H 0.109 0.891 15 C -0.133 4.133 16 C -0.128 4.128 17 C 0.081 3.919 18 C 0.102 3.898 19 N -0.637 5.637 20 C -0.231 4.231 21 H 0.076 0.924 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.284 1.284 26 H -0.271 1.271 27 H -0.289 1.289 28 C 0.167 3.833 29 O -0.361 6.361 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.413 0.587 43 H 0.046 0.954 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.036 0.964 50 H 0.059 0.941 51 H 0.250 0.750 52 H 0.039 0.961 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.273 5.133 -5.639 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.019 4.019 5 O -0.300 6.300 6 C 0.008 3.992 7 H 0.115 0.885 8 C -0.218 4.218 9 C 0.296 3.704 10 O -0.454 6.454 11 N -0.362 5.362 12 C -0.008 4.008 13 C 0.005 3.995 14 H 0.127 0.873 15 C -0.171 4.171 16 C -0.167 4.167 17 C 0.040 3.960 18 C -0.024 4.024 19 N -0.363 5.363 20 C -0.359 4.359 21 H 0.094 0.906 22 C -0.258 4.258 23 N -0.600 5.600 24 Si 0.807 3.193 25 H -0.211 1.211 26 H -0.196 1.196 27 H -0.215 1.215 28 C 0.041 3.959 29 O -0.280 6.280 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.250 0.750 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.057 0.943 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -20.232 5.258 -6.421 21.868 hybrid contribution 1.534 0.658 0.575 1.766 sum -18.698 5.916 -5.846 20.464 Atomic orbital electron populations 1.21740 0.94065 1.01501 1.02354 1.21123 0.97238 0.96466 0.96762 1.21759 1.01144 0.93790 1.03154 1.22906 0.98765 0.80693 0.99540 1.87988 1.77962 1.21328 1.42725 1.21989 1.00327 0.88568 0.88347 0.88454 1.22199 0.97945 1.04784 0.96899 1.20937 0.76121 0.88161 0.85218 1.90670 1.52812 1.81574 1.20363 1.45806 1.67539 1.09646 1.13251 1.21817 1.00972 0.80998 0.96963 1.23333 0.87268 0.93747 0.95179 0.87291 1.23091 0.98989 0.93703 1.01309 1.22958 0.96311 0.95061 1.02348 1.22959 0.88192 0.88187 0.96643 1.22960 0.90710 0.95406 0.93297 1.45958 1.43913 1.42049 1.04423 1.19252 1.11080 1.10810 0.94753 0.90573 1.25626 1.02019 1.02518 0.95597 1.70005 1.47489 1.42455 1.00098 0.85065 0.78450 0.78822 0.77013 1.21120 1.19594 1.21539 1.22012 0.87419 0.93324 0.93145 1.88324 1.18446 1.38139 1.83085 0.93750 0.91724 0.91888 0.92151 0.92557 0.91157 0.91357 0.91134 0.93379 0.89537 0.91782 0.89297 0.75020 0.93540 0.89014 0.86416 0.89783 0.88456 0.88897 0.94612 0.92397 0.94117 0.94297 0.95318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.09 71.98 0.65 -1.62 16 2 C -0.10 -1.74 3.16 -10.79 -0.03 -1.77 16 3 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 4 C 0.06 1.12 5.13 71.98 0.37 1.49 16 5 O -0.38 -10.02 9.06 -129.94 -1.18 -11.20 16 6 C 0.07 1.59 3.14 29.85 0.09 1.69 16 7 H 0.10 2.04 7.79 -2.39 -0.02 2.02 16 8 C -0.16 -2.57 9.42 71.98 0.68 -1.90 16 9 C 0.51 15.05 7.23 87.66 0.63 15.68 16 10 O -0.58 -22.10 16.50 16.01 0.26 -21.83 16 11 N -0.71 -18.15 5.36 -463.04 -2.48 -20.64 16 12 C 0.12 2.92 5.23 86.38 0.45 3.37 16 13 C 0.06 1.45 3.62 31.09 0.11 1.56 16 14 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.13 -2.46 6.56 31.95 0.21 -2.25 16 16 C -0.13 -3.10 6.49 31.75 0.21 -2.89 16 17 C 0.08 2.95 1.56 -10.83 -0.02 2.93 16 18 C 0.10 4.28 8.24 83.47 0.69 4.97 16 19 N -0.64 -34.34 3.77 -740.07 -2.79 -37.13 16 20 C -0.23 -13.62 10.73 84.04 0.90 -12.72 16 21 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 22 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.95 -58.65 11.82 21.65 0.26 -58.40 16 24 Si 0.98 46.88 29.56 68.60 2.03 48.91 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 C 0.17 8.01 6.78 83.55 0.57 8.58 16 29 O -0.36 -12.67 10.69 -148.98 -1.59 -14.27 16 30 H 0.04 0.90 7.82 -2.39 -0.02 0.88 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 38 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 39 H 0.09 1.09 7.87 -2.39 -0.02 1.07 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.14 7.56 -2.38 -0.02 1.12 16 42 H 0.41 9.23 7.82 -92.71 -0.72 8.50 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.08 1.52 7.85 -2.39 -0.02 1.50 16 47 H 0.10 2.11 7.93 -2.39 -0.02 2.10 16 48 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 2.23 7.98 -2.39 -0.02 2.21 16 51 H 0.25 14.84 8.31 -92.72 -0.77 14.07 16 52 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 53 H 0.03 1.56 7.62 -2.39 -0.02 1.54 16 Total: -1.00 -80.73 425.47 1.29 -79.44 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.14 Total: 22.50 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.64 Total: 12.61 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -5.02 Total: -116.16 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -2.51 Total: -47.30 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.73 1.29 -79.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273647154.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.996 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds