Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46937 * 2 1 4 4 O 1.42901 * 109.46898 * 240.00136 * 2 1 3 5 5 C 1.42902 * 113.99795 * 90.00004 * 4 2 1 6 6 C 1.53006 * 109.46953 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.27492 * 54.29843 * 6 5 4 8 8 C 1.54939 * 110.30981 * 176.39074 * 6 5 4 9 9 C 1.55410 * 100.89340 * 155.28657 * 8 6 5 10 10 C 1.54377 * 102.31252 * 325.98969 * 9 8 6 11 11 O 1.43244 * 107.58327 * 21.28397 * 10 9 8 12 12 C 1.50700 * 109.47395 * 120.00147 * 2 1 3 13 13 O 1.21283 * 120.00111 * 114.99832 * 12 2 1 14 14 N 1.34783 * 120.00005 * 294.99995 * 12 2 1 15 15 C 1.46502 * 119.99880 * 359.97438 * 14 12 2 16 16 C 1.46493 * 119.99990 * 179.97438 * 14 12 2 17 17 C 1.53039 * 109.46010 * 240.06762 * 16 14 12 18 18 C 1.53194 * 109.31567 * 178.61167 * 17 16 14 19 19 N 1.46934 * 108.77031 * 54.63822 * 18 17 16 20 20 C 1.36929 * 120.63038 * 126.41239 * 19 18 17 21 21 H 1.08001 * 119.99888 * 207.65440 * 20 19 18 22 22 C 1.38817 * 119.99935 * 27.66032 * 20 19 18 23 23 N 1.31617 * 120.00025 * 17.37367 * 22 20 19 24 24 Si 1.86806 * 119.99836 * 197.37405 * 22 20 19 25 25 H 1.48503 * 109.46796 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.46798 * 119.99546 * 24 22 20 27 27 H 1.48495 * 109.47358 * 239.99853 * 24 22 20 28 28 C 1.46926 * 118.73493 * 306.38954 * 19 18 17 29 29 C 1.53042 * 109.46108 * 120.00058 * 16 14 12 30 30 H 1.09005 * 109.46899 * 299.99866 * 1 2 3 31 31 H 1.08995 * 109.47259 * 59.99638 * 1 2 3 32 32 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46908 * 299.99874 * 5 4 2 34 34 H 1.09002 * 109.47300 * 59.99971 * 5 4 2 35 35 H 1.09006 * 111.12221 * 273.28003 * 8 6 5 36 36 H 1.09007 * 111.12596 * 37.43874 * 8 6 5 37 37 H 1.09006 * 110.88353 * 207.75151 * 9 8 6 38 38 H 1.09003 * 110.93160 * 84.25362 * 9 8 6 39 39 H 1.08997 * 109.83305 * 261.77424 * 10 9 8 40 40 H 1.09001 * 109.90941 * 140.83774 * 10 9 8 41 41 H 1.08997 * 109.47134 * 89.99526 * 15 14 12 42 42 H 1.09000 * 109.47171 * 209.99890 * 15 14 12 43 43 H 1.09004 * 109.46924 * 330.00315 * 15 14 12 44 44 H 1.08997 * 109.45900 * 0.02562 * 16 14 12 45 45 H 1.09000 * 109.49864 * 298.56628 * 17 16 14 46 46 H 1.08998 * 109.49870 * 58.66239 * 17 16 14 47 47 H 1.08999 * 109.58814 * 294.85076 * 18 17 16 48 48 H 1.09000 * 109.59008 * 174.41987 * 18 17 16 49 49 H 0.97008 * 119.99440 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.58894 * 293.81921 * 28 19 18 51 51 H 1.08999 * 109.58296 * 173.39849 * 28 19 18 52 52 H 1.08999 * 109.49396 * 301.33938 * 29 16 14 53 53 H 1.08996 * 109.49432 * 61.43228 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7090 -0.6405 -3.4789 7 1 2.0363 -1.4753 -3.6754 8 6 2.8396 0.2528 -4.7381 9 6 3.9142 -0.5298 -5.5432 10 6 4.8090 -1.1055 -4.4247 11 8 4.0372 -1.1212 -3.2180 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7467 1.1214 14 7 1.7920 -0.1942 2.4520 15 6 1.0428 1.0578 2.5837 16 6 2.2799 -0.8851 3.6481 17 6 1.0942 -1.2572 4.5413 18 6 1.6049 -2.0099 5.7739 19 7 2.6271 -1.1900 6.4387 20 6 2.5211 -0.8867 7.7697 21 1 2.9640 0.0203 8.1538 22 6 1.8445 -1.7452 8.6255 23 7 1.6048 -2.9862 8.2585 24 14 1.2742 -1.1390 10.2979 25 1 1.6649 0.2836 10.4682 26 1 -0.2026 -1.2618 10.3916 27 1 1.9077 -1.9568 11.3632 28 6 3.7654 -0.7023 5.6480 29 6 3.2304 0.0357 4.4168 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2537 0.6548 -2.5588 34 1 2.9319 0.9514 -2.0450 35 1 1.8972 0.3030 -5.2836 36 1 3.1941 1.2500 -4.4773 37 1 4.4822 0.1413 -6.1876 38 1 3.4580 -1.3303 -6.1257 39 1 5.6882 -0.4749 -4.2931 40 1 5.1163 -2.1196 -4.6802 41 1 -0.0214 0.8373 2.6678 42 1 1.3756 1.5883 3.4758 43 1 1.2166 1.6793 1.7052 44 1 2.8105 -1.7904 3.3535 45 1 0.5777 -0.3507 4.8567 46 1 0.4059 -1.8940 3.9856 47 1 2.0415 -2.9603 5.4669 48 1 0.7779 -2.1903 6.4607 49 1 1.1316 -3.5860 8.8564 50 1 4.3782 -1.5459 5.3307 51 1 4.3638 -0.0199 6.2516 52 1 4.0626 0.3192 3.7724 53 1 2.6938 0.9300 4.7333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316937574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -121.895613 kcal Electronic energy + Delta-G solvation = -30869.500267 eV Core-core repulsion = 26741.252218 eV Total energy + Delta-G solvation = -4128.248049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46096 -40.46951 -39.32325 -38.27414 -36.63282 -34.52443 -33.24667 -32.89967 -31.84654 -31.42420 -30.70805 -27.99895 -27.15065 -26.50253 -25.11111 -23.89348 -23.36538 -22.54662 -22.28211 -20.87740 -20.24183 -18.78059 -18.46174 -17.94135 -17.68779 -17.11320 -16.90071 -16.71533 -16.33860 -16.05448 -15.82989 -15.41418 -15.38520 -15.04837 -14.83467 -14.42502 -14.37937 -14.23404 -14.10871 -14.00630 -13.59408 -13.32735 -13.19587 -13.08822 -13.03639 -12.74079 -12.66660 -12.63487 -12.49620 -12.45625 -12.17752 -12.12112 -12.01302 -11.94926 -11.89347 -11.68283 -11.48013 -11.33845 -10.93282 -10.58040 -10.49882 -10.43053 -9.61303 -8.73775 -7.87968 -5.34213 1.47740 1.49125 1.55609 1.60433 1.72813 2.51611 2.71504 2.90081 3.27822 3.44049 3.55813 3.63456 3.80124 3.88315 3.90991 3.96936 4.01816 4.07050 4.14924 4.23954 4.28203 4.32779 4.37883 4.44385 4.49017 4.58096 4.59724 4.63158 4.68911 4.74399 4.78765 4.81130 4.84893 4.88225 4.94391 4.97844 5.00803 5.02778 5.04183 5.12504 5.23230 5.24353 5.27495 5.43444 5.56644 5.63033 5.68084 6.03260 6.18966 6.37444 6.45379 7.12327 7.16869 7.82287 8.36154 9.19499 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.002035 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.210622 B =13759.075881 C =14104.952966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.389 6.389 5 C 0.056 3.944 6 C 0.071 3.929 7 H 0.068 0.932 8 C -0.137 4.137 9 C -0.148 4.148 10 C 0.035 3.965 11 O -0.411 6.411 12 C 0.500 3.500 13 O -0.583 6.583 14 N -0.602 5.602 15 C 0.062 3.938 16 C 0.154 3.846 17 C -0.124 4.124 18 C 0.180 3.820 19 N -0.607 5.607 20 C -0.259 4.259 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.971 3.029 25 H -0.262 1.262 26 H -0.289 1.289 27 H -0.296 1.296 28 C 0.142 3.858 29 C -0.120 4.120 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.054 0.946 47 H -0.015 1.015 48 H 0.062 0.938 49 H 0.250 0.750 50 H 0.002 0.998 51 H 0.066 0.934 52 H 0.069 0.931 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 15.537 -28.532 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.135 0.865 4 O -0.308 6.308 5 C -0.020 4.020 6 C 0.014 3.986 7 H 0.086 0.914 8 C -0.175 4.175 9 C -0.186 4.186 10 C -0.042 4.042 11 O -0.332 6.332 12 C 0.289 3.711 13 O -0.462 6.462 14 N -0.335 5.335 15 C -0.079 4.079 16 C 0.050 3.950 17 C -0.164 4.164 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.389 4.389 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.799 3.201 25 H -0.186 1.186 26 H -0.216 1.216 27 H -0.223 1.223 28 C 0.016 3.984 29 C -0.160 4.160 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.003 0.997 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.020 0.980 51 H 0.085 0.915 52 H 0.087 0.913 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.759 14.644 -28.319 32.000 hybrid contribution -0.016 -0.651 1.114 1.290 sum -2.775 13.992 -27.205 30.718 Atomic orbital electron populations 1.22375 0.91310 1.03357 1.05715 1.21987 0.96510 0.96384 0.83316 0.86521 1.88091 1.86926 1.35716 1.20026 1.23032 1.01190 0.92551 0.85193 1.23205 0.84506 0.96502 0.94420 0.91445 1.23264 1.01373 0.99135 0.93707 1.23137 0.97010 1.00804 0.97616 1.23349 0.95205 1.01230 0.84370 1.88561 1.24282 1.87013 1.33304 1.21320 0.79066 0.85125 0.85615 1.90697 1.42478 1.26168 1.86871 1.48035 1.55272 1.25645 1.04532 1.22280 0.96584 0.84145 1.04864 1.20774 0.95013 0.95301 0.83878 1.22255 0.96930 1.00963 0.96274 1.20529 0.92231 0.90258 0.91595 1.44357 1.21954 1.60515 1.06267 1.19594 1.32541 1.02264 0.84524 0.90868 1.25892 1.02930 0.94686 1.01515 1.70227 1.45253 1.04916 1.38146 0.85146 0.77389 0.78219 0.79304 1.18591 1.21596 1.22309 1.21010 0.89532 0.95693 0.92149 1.22153 0.98602 0.98784 0.96431 0.88434 0.88321 0.93427 0.88268 0.92129 0.87143 0.88957 0.87758 0.89771 0.90906 0.91751 0.90649 0.90028 0.87983 0.92594 0.90742 0.92753 0.99738 0.91934 0.94128 0.97974 0.91524 0.91278 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.25 71.98 0.67 -1.98 16 2 C 0.08 1.74 2.32 29.85 0.07 1.80 16 3 H 0.12 1.71 6.77 -2.39 -0.02 1.70 16 4 O -0.39 -10.64 9.52 -127.41 -1.21 -11.85 16 5 C 0.06 0.97 5.45 71.98 0.39 1.36 16 6 C 0.07 1.29 3.72 31.26 0.12 1.40 16 7 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.14 -1.22 6.58 32.09 0.21 -1.01 16 9 C -0.15 -1.37 7.02 31.89 0.22 -1.15 16 10 C 0.03 0.58 7.80 72.45 0.56 1.15 16 11 O -0.41 -10.64 11.04 -148.28 -1.64 -12.28 16 12 C 0.50 16.36 7.10 87.66 0.62 16.99 16 13 O -0.58 -26.36 15.83 15.95 0.25 -26.11 16 14 N -0.60 -17.37 2.76 -822.44 -2.27 -19.64 16 15 C 0.06 1.10 8.01 127.77 1.02 2.12 16 16 C 0.15 5.67 2.48 45.02 0.11 5.78 16 17 C -0.12 -4.88 5.34 30.67 0.16 -4.72 16 18 C 0.18 9.15 5.31 86.36 0.46 9.61 16 19 N -0.61 -31.21 2.99 -699.09 -2.09 -33.31 16 20 C -0.26 -14.26 9.59 84.04 0.81 -13.45 16 21 H 0.07 3.86 7.89 -2.91 -0.02 3.83 16 22 C -0.06 -3.11 4.91 84.86 0.42 -2.70 16 23 N -0.94 -56.92 11.19 21.65 0.24 -56.68 16 24 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 28 C 0.14 6.15 6.52 86.36 0.56 6.72 16 29 C -0.12 -4.15 5.31 30.67 0.16 -3.99 16 30 H 0.10 1.16 5.12 -2.38 -0.01 1.15 16 31 H 0.10 0.92 7.87 -2.39 -0.02 0.90 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.92 7.87 -2.39 -0.02 0.90 16 34 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.09 0.64 8.06 -2.38 -0.02 0.62 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.13 7.02 -2.39 -0.02 1.11 16 42 H 0.08 1.45 6.45 -2.39 -0.02 1.43 16 43 H 0.10 1.06 6.08 -2.39 -0.01 1.04 16 44 H 0.06 2.53 6.90 -2.39 -0.02 2.51 16 45 H 0.07 2.68 7.72 -2.39 -0.02 2.66 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.06 3.51 6.04 -2.39 -0.01 3.50 16 49 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 50 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 52 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.08 2.52 6.72 -2.39 -0.02 2.50 16 Total: -1.00 -83.29 405.35 2.76 -80.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.88 Total: 14.55 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.57 Total: 17.93 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.12 Total: -109.63 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -2.60 Total: -50.24 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -83.29 2.76 -80.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316937574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.368 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds