Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47427 * 2 1 4 4 C 1.34775 * 120.00012 * 83.96437 * 3 2 1 5 5 O 1.21285 * 120.00435 * 175.19410 * 4 3 2 6 6 C 1.50704 * 119.99971 * 355.19641 * 4 3 2 7 7 C 1.52996 * 109.47371 * 179.97438 * 6 4 3 8 8 O 1.42891 * 109.47575 * 179.97438 * 7 6 4 9 9 C 1.42904 * 114.00498 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47073 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.82039 * 54.43436 * 10 9 8 12 12 C 1.54380 * 109.90044 * 175.36669 * 10 9 8 13 13 C 1.55310 * 102.24929 * 140.91624 * 12 10 9 14 14 C 1.54945 * 100.94396 * 325.86565 * 13 12 10 15 15 O 1.43234 * 109.83156 * 293.54760 * 10 9 8 16 16 C 1.46500 * 120.00362 * 263.97109 * 3 2 1 17 17 H 1.08995 * 110.88915 * 180.62096 * 16 3 2 18 18 C 1.55159 * 111.00505 * 56.73627 * 16 3 2 19 19 C 1.54328 * 102.94038 * 277.43000 * 18 16 3 20 20 N 1.47018 * 107.27407 * 337.81059 * 19 18 16 21 21 C 1.36936 * 125.64865 * 178.98965 * 20 19 18 22 22 H 1.07996 * 119.99981 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99828 * 359.96864 * 21 20 19 24 24 N 1.31614 * 120.00297 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99923 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46916 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47255 * 119.99847 * 25 23 21 28 28 H 1.48496 * 109.47384 * 240.00031 * 25 23 21 29 29 C 1.47425 * 108.70281 * 358.93687 * 20 19 18 30 30 H 1.08999 * 109.47175 * 293.62011 * 1 2 3 31 31 H 1.08997 * 109.46770 * 53.61834 * 1 2 3 32 32 H 1.08998 * 109.47422 * 173.61890 * 1 2 3 33 33 H 1.09004 * 109.47243 * 240.00109 * 2 1 3 34 34 H 1.08999 * 109.47217 * 120.00007 * 2 1 3 35 35 H 1.08990 * 109.47318 * 59.99409 * 6 4 3 36 36 H 1.09003 * 109.46512 * 299.99625 * 6 4 3 37 37 H 1.09002 * 109.47047 * 59.99744 * 7 6 4 38 38 H 1.09002 * 109.47070 * 299.99898 * 7 6 4 39 39 H 1.09004 * 109.46719 * 60.00355 * 9 8 7 40 40 H 1.08995 * 109.46784 * 300.00221 * 9 8 7 41 41 H 1.09003 * 110.84922 * 259.10320 * 12 10 9 42 42 H 1.08997 * 110.85048 * 22.72694 * 12 10 9 43 43 H 1.08997 * 111.12718 * 83.78522 * 13 12 10 44 44 H 1.08998 * 111.12505 * 207.90451 * 13 12 10 45 45 H 1.09000 * 110.30860 * 277.53067 * 14 13 12 46 46 H 1.08996 * 110.31177 * 155.35770 * 14 13 12 47 47 H 1.08994 * 110.71860 * 35.79645 * 18 16 3 48 48 H 1.08994 * 110.71689 * 159.07063 * 18 16 3 49 49 H 1.09004 * 109.87975 * 97.22503 * 19 18 16 50 50 H 1.09000 * 109.87753 * 218.38749 * 19 18 16 51 51 H 0.97005 * 120.00314 * 180.02562 * 24 23 21 52 52 H 1.09002 * 110.36837 * 265.29317 * 29 20 19 53 53 H 1.08996 * 110.36654 * 142.97204 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1274 2.0574 1.1607 5 8 2.6129 3.1687 1.1719 6 6 1.6458 1.4326 2.4448 7 6 1.8842 2.4019 3.6044 8 8 1.4271 1.8098 4.8219 9 6 1.6051 2.6372 5.9734 10 6 1.0829 1.9064 7.2120 11 1 1.5611 0.9305 7.2944 12 6 1.3754 2.7415 8.4771 13 6 0.0854 2.5314 9.3162 14 6 -0.9822 2.4415 8.1969 15 8 -0.3373 1.7453 7.1185 16 6 2.3883 2.0274 -1.2617 17 1 2.7403 3.0444 -1.0888 18 6 1.2031 2.0117 -2.2629 19 6 1.2981 0.6043 -2.8890 20 7 2.6802 0.1375 -2.7058 21 6 3.1719 -1.0766 -3.1049 22 1 4.2070 -1.3259 -2.9237 23 6 2.3400 -1.9869 -3.7422 24 7 1.0787 -1.6829 -3.9633 25 14 3.0107 -3.6434 -4.2860 26 1 4.4474 -3.7392 -3.9226 27 1 2.2562 -4.7291 -3.6098 28 1 2.8616 -3.7790 -5.7572 29 6 3.4492 1.1935 -2.0224 30 1 -0.3633 0.4118 0.9416 31 1 -0.3633 0.6096 -0.8273 32 1 -0.3634 -1.0213 -0.1142 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1931 0.5078 2.6265 36 1 0.5807 1.2150 2.3658 37 1 1.3371 3.3270 3.4229 38 1 2.9494 2.6192 3.6832 39 1 1.0527 3.5675 5.8410 40 1 2.6646 2.8586 6.1013 41 1 2.2480 2.3552 9.0038 42 1 1.5072 3.7938 8.2254 43 1 0.1349 1.6043 9.8872 44 1 -0.1009 3.3832 9.9702 45 1 -1.2806 3.4401 7.8777 46 1 -1.8490 1.8799 8.5450 47 1 0.2550 2.1381 -1.7403 48 1 1.3309 2.7816 -3.0238 49 1 0.6083 -0.0728 -2.3852 50 1 1.0616 0.6547 -3.9518 51 1 0.4972 -2.3191 -4.4083 52 1 3.9697 1.8154 -2.7507 53 1 4.1590 0.7530 -1.3223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318474817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -113.494618 kcal Electronic energy + Delta-G solvation = -30797.030680 eV Core-core repulsion = 26669.146926 eV Total energy + Delta-G solvation = -4127.883755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45249 -40.53088 -39.30287 -38.43532 -36.16517 -34.34031 -33.25199 -32.83299 -31.73484 -31.16548 -30.82867 -28.64666 -26.62252 -26.29876 -24.96534 -23.92447 -22.61572 -22.21184 -21.92438 -21.70985 -19.78332 -18.87636 -18.63110 -18.12732 -17.53140 -17.13570 -16.97335 -16.67553 -16.59103 -16.02225 -15.92873 -15.59375 -15.49190 -14.94505 -14.65528 -14.48336 -14.29280 -14.12937 -13.79093 -13.68963 -13.62051 -13.48081 -13.29561 -12.89975 -12.84717 -12.65877 -12.57888 -12.51872 -12.30832 -12.20017 -12.10375 -12.07635 -12.02681 -11.96207 -11.77375 -11.70223 -11.57500 -11.48883 -10.76337 -10.67272 -10.62723 -10.47236 -9.67646 -8.77142 -7.80588 -5.15327 1.48866 1.50607 1.57053 1.59392 1.88554 2.51896 2.63621 2.95717 3.38883 3.56742 3.58460 3.69746 3.81399 3.90347 3.96012 3.99353 4.02095 4.14584 4.16257 4.18158 4.29089 4.33456 4.40143 4.45295 4.48868 4.51999 4.63783 4.64347 4.65936 4.73446 4.79297 4.81577 4.85310 4.88831 4.91057 4.95700 4.97234 5.02534 5.04845 5.06623 5.26054 5.30990 5.43202 5.51945 5.70410 5.72311 5.86426 6.05325 6.23550 6.24122 6.51320 7.13427 7.14890 7.79588 8.44227 9.28737 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002100 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.964105 B =13333.035647 C =13901.518413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.085 3.915 3 N -0.584 5.584 4 C 0.519 3.481 5 O -0.584 6.584 6 C -0.131 4.131 7 C 0.086 3.914 8 O -0.398 6.398 9 C 0.048 3.952 10 C 0.077 3.923 11 H 0.083 0.917 12 C -0.143 4.143 13 C -0.149 4.149 14 C 0.035 3.965 15 O -0.402 6.402 16 C 0.133 3.867 17 H 0.106 0.894 18 C -0.144 4.144 19 C 0.180 3.820 20 N -0.614 5.614 21 C -0.236 4.236 22 H 0.078 0.922 23 C -0.055 4.055 24 N -0.942 5.942 25 Si 0.970 3.030 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.298 1.298 29 C 0.125 3.875 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.046 0.954 50 H 0.001 0.999 51 H 0.246 0.754 52 H 0.035 0.965 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 9.425 25.357 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.037 4.037 3 N -0.314 5.314 4 C 0.309 3.691 5 O -0.466 6.466 6 C -0.171 4.171 7 C 0.009 3.991 8 O -0.318 6.318 9 C -0.028 4.028 10 C 0.019 3.981 11 H 0.100 0.900 12 C -0.181 4.181 13 C -0.186 4.186 14 C -0.041 4.041 15 O -0.322 6.322 16 C 0.028 3.972 17 H 0.124 0.876 18 C -0.183 4.183 19 C 0.056 3.944 20 N -0.341 5.341 21 C -0.365 4.365 22 H 0.096 0.904 23 C -0.249 4.249 24 N -0.591 5.591 25 Si 0.799 3.201 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.225 1.225 29 C -0.001 4.001 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.019 0.981 51 H 0.056 0.944 52 H 0.053 0.947 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.873 9.507 25.095 26.901 hybrid contribution 0.329 -0.712 -0.964 1.243 sum -1.544 8.795 24.131 25.730 Atomic orbital electron populations 1.22198 0.95273 1.02372 1.01864 1.22015 0.95132 0.81430 1.05159 1.47849 1.63398 1.14547 1.05624 1.20765 0.77630 0.85088 0.85638 1.90633 1.47159 1.21525 1.87261 1.21500 1.04913 1.00615 0.90031 1.22002 0.98850 0.94942 0.83278 1.87843 1.84400 1.43949 1.15585 1.23124 1.00646 0.93719 0.85331 1.22901 0.81845 0.99719 0.93620 0.89950 1.23135 1.00049 1.01166 0.93735 1.23272 0.93268 1.04312 0.97796 1.23628 0.96791 0.97212 0.86448 1.88524 1.18774 1.74241 1.50668 1.22074 0.95335 0.96751 0.83031 0.87600 1.23177 0.98307 0.98693 0.98130 1.21112 0.86145 0.90801 0.96357 1.44756 1.07346 1.13881 1.68087 1.19336 0.95096 0.90834 1.31236 0.90415 1.25463 0.96286 1.01599 1.01561 1.70150 1.05188 1.35742 1.48016 0.85136 0.77793 0.80176 0.76945 1.19503 1.21817 1.22531 1.21989 0.93728 0.90439 0.93990 0.91490 0.92880 0.91913 0.88115 0.90034 0.87051 0.87032 0.93227 0.92679 0.92926 0.90565 0.87872 0.89307 0.89794 0.87773 0.91957 0.89074 0.90344 0.90210 0.93641 0.98064 0.94411 0.94717 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.13 71.98 0.66 -4.22 16 2 C 0.09 2.86 4.87 86.38 0.42 3.28 16 3 N -0.58 -19.55 2.53 -790.12 -2.00 -21.54 16 4 C 0.52 16.52 7.62 87.66 0.67 17.18 16 5 O -0.58 -21.54 15.37 -3.05 -0.05 -21.58 16 6 C -0.13 -3.34 4.75 29.85 0.14 -3.20 16 7 C 0.09 2.14 5.23 71.98 0.38 2.52 16 8 O -0.40 -9.94 10.33 -146.53 -1.51 -11.45 16 9 C 0.05 0.91 5.48 71.98 0.39 1.30 16 10 C 0.08 1.30 3.81 31.06 0.12 1.41 16 11 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 12 C -0.14 -1.33 6.55 31.86 0.21 -1.13 16 13 C -0.15 -1.24 7.16 32.05 0.23 -1.01 16 14 C 0.04 0.48 7.78 72.65 0.56 1.04 16 15 O -0.40 -8.76 11.00 -146.53 -1.61 -10.37 16 16 C 0.13 4.77 3.67 46.39 0.17 4.94 16 17 H 0.11 3.72 7.02 -2.39 -0.02 3.70 16 18 C -0.14 -5.27 6.00 31.79 0.19 -5.08 16 19 C 0.18 8.35 4.17 86.73 0.36 8.71 16 20 N -0.61 -29.58 1.91 -691.99 -1.32 -30.90 16 21 C -0.24 -12.53 9.90 84.03 0.83 -11.69 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.06 -2.99 5.49 84.86 0.47 -2.52 16 24 N -0.94 -53.50 10.31 21.65 0.22 -53.28 16 25 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 C 0.12 5.06 6.54 86.86 0.57 5.63 16 30 H 0.07 1.71 6.25 -2.39 -0.01 1.70 16 31 H 0.05 1.77 4.92 -2.39 -0.01 1.76 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.10 4.29 4.28 -2.38 -0.01 4.28 16 34 H 0.08 2.37 6.74 -2.39 -0.02 2.36 16 35 H 0.11 2.60 7.30 -2.39 -0.02 2.59 16 36 H 0.11 2.67 6.27 -2.39 -0.01 2.66 16 37 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.68 7.85 -2.39 -0.02 0.66 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 2.67 6.60 -2.39 -0.02 2.66 16 48 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 49 H 0.05 2.23 4.64 -2.38 -0.01 2.22 16 50 H 0.00 0.06 7.50 -2.39 -0.02 0.04 16 51 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 52 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.57 399.86 3.02 -63.55 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.89 Total: 22.05 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.37 Total: 17.16 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.09 Total: -105.72 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -3.17 Total: -43.41 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.57 3.02 -63.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318474817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.945 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds