Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47254 * 2 1 4 4 O 1.42906 * 109.47143 * 119.99974 * 2 1 3 5 5 C 1.42901 * 114.00095 * 270.00309 * 4 2 1 6 6 C 1.52993 * 109.47256 * 179.97438 * 5 4 2 7 7 C 1.53003 * 117.49782 * 243.61968 * 6 5 4 8 8 C 1.52999 * 59.99967 * 252.51105 * 7 6 5 9 9 C 1.50704 * 109.47095 * 239.99547 * 2 1 3 10 10 O 1.21280 * 120.00072 * 246.97260 * 9 2 1 11 11 N 1.34781 * 119.99682 * 66.97828 * 9 2 1 12 12 C 1.46919 * 120.62689 * 184.48983 * 11 9 2 13 13 C 1.52762 * 109.01088 * 233.57931 * 12 11 9 14 14 C 1.53041 * 109.38459 * 305.59708 * 13 12 11 15 15 C 1.53040 * 109.54023 * 61.23423 * 14 13 12 16 16 H 1.08994 * 109.49936 * 58.58788 * 15 14 13 17 17 N 1.46501 * 109.52082 * 178.66945 * 15 14 13 18 18 C 1.36929 * 120.00285 * 57.43619 * 17 15 14 19 19 H 1.08007 * 119.99970 * 325.45047 * 18 17 15 20 20 C 1.38812 * 120.00568 * 145.45820 * 18 17 15 21 21 N 1.31611 * 120.00552 * 157.06681 * 20 18 17 22 22 Si 1.86804 * 119.99433 * 337.06191 * 20 18 17 23 23 H 1.48496 * 109.46839 * 95.43946 * 22 20 18 24 24 H 1.48503 * 109.46891 * 215.43475 * 22 20 18 25 25 H 1.48496 * 109.47494 * 335.43588 * 22 20 18 26 26 C 1.46504 * 119.99578 * 237.42692 * 17 15 14 27 27 C 1.52998 * 109.46944 * 90.00563 * 26 17 15 28 28 O 1.42898 * 109.47373 * 64.99485 * 27 26 17 29 29 C 1.46929 * 120.62877 * 4.76900 * 11 9 2 30 30 H 1.09001 * 109.47133 * 305.28080 * 1 2 3 31 31 H 1.09001 * 109.47246 * 65.28040 * 1 2 3 32 32 H 1.09002 * 109.47710 * 185.28349 * 1 2 3 33 33 H 1.09004 * 109.47104 * 59.99357 * 5 4 2 34 34 H 1.09004 * 109.46620 * 300.00034 * 5 4 2 35 35 H 1.08997 * 115.56269 * 29.30740 * 6 5 4 36 36 H 1.09003 * 117.49825 * 359.97438 * 7 6 5 37 37 H 1.08999 * 117.49970 * 145.02192 * 7 6 5 38 38 H 1.09006 * 117.50060 * 252.51076 * 8 7 6 39 39 H 1.09000 * 117.52211 * 107.47956 * 8 7 6 40 40 H 1.08995 * 109.59209 * 353.42211 * 12 11 9 41 41 H 1.09003 * 109.58655 * 113.84471 * 12 11 9 42 42 H 1.08994 * 109.56730 * 185.55540 * 13 12 11 43 43 H 1.09005 * 109.38067 * 65.52155 * 13 12 11 44 44 H 1.09006 * 109.45495 * 301.21406 * 14 13 12 45 45 H 1.08999 * 109.45712 * 181.25699 * 14 13 12 46 46 H 0.96999 * 120.00075 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.46965 * 210.00213 * 26 17 15 48 48 H 1.09001 * 109.47383 * 330.00370 * 26 17 15 49 49 H 1.08995 * 109.47428 * 184.99813 * 27 26 17 50 50 H 1.09004 * 109.47328 * 305.00083 * 27 26 17 51 51 H 0.96697 * 114.00237 * 180.02562 * 28 27 26 52 52 H 1.08993 * 109.58488 * 246.15505 * 29 11 9 53 53 H 1.08993 * 109.58804 * 6.44460 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1829 2.2942 6 6 2.7078 -0.6408 3.4792 7 6 1.8117 -0.7252 4.7165 8 6 3.0895 0.1155 4.7533 9 6 2.0323 -0.7105 -1.2304 10 8 2.6218 -1.7650 -1.1236 11 7 1.8265 -0.1740 -2.4496 12 6 2.2225 -0.9005 -3.6636 13 6 3.1161 0.0009 -4.5138 14 6 2.3959 1.3248 -4.7797 15 6 2.1176 2.0320 -3.4513 16 1 3.0576 2.2058 -2.9277 17 7 1.4567 3.3139 -3.7083 18 6 0.2775 3.3491 -4.4036 19 1 0.1002 2.6438 -5.2021 20 6 -0.6899 4.2914 -4.0824 21 7 -1.5901 4.6415 -4.9764 22 14 -0.7141 5.0623 -2.3810 23 1 0.0149 6.3556 -2.4132 24 1 -2.1199 5.2968 -1.9638 25 1 -0.0567 4.1474 -1.4135 26 6 2.0572 4.5582 -3.2211 27 6 2.9990 5.1215 -4.2873 28 8 2.2435 5.4930 -5.4419 29 6 1.2075 1.1512 -2.5895 30 1 -0.3633 0.5936 0.8389 31 1 -0.3634 0.4297 -0.9335 32 1 -0.3634 -1.0233 0.0946 33 1 1.2537 0.6547 2.5589 34 1 2.9319 0.9513 2.0450 35 1 3.2951 -1.5223 3.2221 36 1 0.8606 -0.1936 4.6864 37 1 1.8095 -1.6622 5.2734 38 1 3.9281 -0.2685 5.3344 39 1 2.9793 1.1999 4.7470 40 1 2.7710 -1.8012 -3.3880 41 1 1.3338 -1.1714 -4.2336 42 1 3.3348 -0.4911 -5.4614 43 1 4.0471 0.1938 -3.9806 44 1 1.4536 1.1291 -5.2914 45 1 3.0233 1.9602 -5.4049 46 1 -2.2663 5.2997 -4.7517 47 1 1.2709 5.2833 -3.0112 48 1 2.6195 4.3576 -2.3091 49 1 3.5128 5.9977 -3.8920 50 1 3.7324 4.3632 -4.5616 51 1 2.7774 5.8587 -6.1604 52 1 0.2343 1.0509 -3.0700 53 1 1.0842 1.6026 -1.6051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479650385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -90.543042 kcal Electronic energy + Delta-G solvation = -31986.494914 eV Core-core repulsion = 27859.606414 eV Total energy + Delta-G solvation = -4126.888500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.53386 -39.65957 -38.96471 -37.78700 -37.41003 -36.20325 -34.23326 -33.57727 -32.13271 -31.28181 -29.19900 -28.10313 -26.83023 -25.83619 -24.77423 -23.80772 -23.25283 -22.35320 -21.77617 -21.41155 -20.08444 -18.61569 -18.37996 -18.23574 -17.75695 -17.34589 -17.00688 -16.52168 -16.33210 -16.04601 -15.84450 -15.39569 -15.29175 -15.12005 -15.04438 -14.78399 -14.48021 -14.20455 -14.06090 -13.90594 -13.80093 -13.55145 -13.37343 -13.27683 -13.00695 -12.84474 -12.69979 -12.40043 -12.39280 -12.15145 -12.01254 -11.91735 -11.77551 -11.67125 -11.45688 -11.40706 -11.35097 -11.30145 -10.77665 -10.64855 -10.44556 -10.40386 -9.70862 -8.70355 -8.00718 -5.34988 1.37665 1.45153 1.48300 1.55504 1.68110 2.54878 2.57484 2.92822 3.10716 3.32621 3.51905 3.73925 3.76282 3.88054 3.90423 3.96630 3.97902 4.06062 4.11784 4.13306 4.25637 4.29845 4.41149 4.43769 4.45231 4.54945 4.57768 4.61666 4.63320 4.64257 4.70927 4.73585 4.76981 4.83380 4.89961 4.99971 5.00007 5.00903 5.08815 5.10578 5.15138 5.21409 5.23723 5.37251 5.49233 5.56051 6.05374 6.07820 6.31565 6.38346 7.05077 7.10377 7.22136 7.79405 8.15700 9.19557 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003614 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.838119 B = 7746.685869 C = 8868.041830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 H 0.101 0.899 4 O -0.379 6.379 5 C 0.085 3.915 6 C -0.173 4.173 7 C -0.176 4.176 8 C -0.159 4.159 9 C 0.516 3.484 10 O -0.569 6.569 11 N -0.598 5.598 12 C 0.110 3.890 13 C -0.117 4.117 14 C -0.116 4.116 15 C 0.165 3.835 16 H 0.077 0.923 17 N -0.597 5.597 18 C -0.218 4.218 19 H 0.043 0.957 20 C -0.015 4.015 21 N -0.951 5.951 22 Si 0.929 3.071 23 H -0.290 1.290 24 H -0.321 1.321 25 H -0.242 1.242 26 C 0.118 3.882 27 C 0.063 3.937 28 O -0.574 6.574 29 C 0.101 3.899 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.254 0.746 47 H 0.035 0.965 48 H 0.089 0.911 49 H 0.053 0.947 50 H 0.048 0.952 51 H 0.375 0.625 52 H 0.065 0.935 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 -5.637 13.364 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.118 0.882 4 O -0.297 6.297 5 C 0.009 3.991 6 C -0.191 4.191 7 C -0.213 4.213 8 C -0.196 4.196 9 C 0.304 3.696 10 O -0.449 6.449 11 N -0.332 5.332 12 C -0.011 4.011 13 C -0.156 4.156 14 C -0.155 4.155 15 C 0.058 3.942 16 H 0.095 0.905 17 N -0.319 5.319 18 C -0.348 4.348 19 H 0.060 0.940 20 C -0.210 4.210 21 N -0.597 5.597 22 Si 0.760 3.240 23 H -0.218 1.218 24 H -0.251 1.251 25 H -0.165 1.165 26 C -0.007 4.007 27 C -0.017 4.017 28 O -0.379 6.379 29 C -0.023 4.023 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.107 0.893 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.221 0.779 52 H 0.083 0.917 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.087 -6.534 13.792 18.863 hybrid contribution -0.265 1.148 -0.202 1.195 sum 10.822 -5.386 13.590 18.188 Atomic orbital electron populations 1.22288 0.92467 1.03697 1.04352 1.21889 0.95901 0.96381 0.84494 0.88157 1.87993 1.86722 1.35486 1.19546 1.22310 1.00007 0.92051 0.84730 1.22078 1.05491 1.02679 0.88855 1.23162 0.95420 1.02688 0.99982 1.23077 0.99267 0.99391 0.97893 1.20722 0.78692 0.85276 0.84940 1.90641 1.42935 1.24640 1.86640 1.48165 1.60394 1.19225 1.05429 1.21594 0.99321 0.95556 0.84672 1.21753 0.98161 0.95282 1.00383 1.21788 0.99810 0.95874 0.98060 1.20821 0.94201 0.84790 0.94347 0.90500 1.44095 1.23294 1.00189 1.64334 1.18306 0.91541 1.15971 1.08986 0.93969 1.25789 0.96266 0.99274 0.99665 1.70019 1.20691 1.34304 1.34652 0.86104 0.74517 0.78748 0.84628 1.21824 1.25131 1.16539 1.21576 0.95542 0.88226 0.95325 1.22854 0.93708 0.97584 0.87562 1.86878 1.38249 1.85195 1.27535 1.22418 0.97483 0.80922 1.01493 0.89463 0.90628 0.91700 0.91721 0.92073 0.88291 0.88121 0.88048 0.87349 0.87611 0.89618 0.91184 0.89019 0.91371 0.93621 0.92510 0.93725 0.94703 0.89289 0.92941 0.93386 0.77906 0.91673 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 9.15 71.98 0.66 -3.51 16 2 C 0.07 2.00 2.29 29.85 0.07 2.07 16 3 H 0.10 2.34 6.75 -2.39 -0.02 2.33 16 4 O -0.38 -10.77 9.53 -130.04 -1.24 -12.01 16 5 C 0.09 1.78 6.03 71.98 0.43 2.21 16 6 C -0.17 -3.28 6.06 -10.79 -0.07 -3.35 16 7 C -0.18 -2.64 10.18 30.59 0.31 -2.33 16 8 C -0.16 -2.16 10.25 30.59 0.31 -1.85 16 9 C 0.52 16.52 7.07 87.66 0.62 17.14 16 10 O -0.57 -22.11 15.93 15.92 0.25 -21.86 16 11 N -0.60 -17.79 2.98 -819.75 -2.44 -20.24 16 12 C 0.11 3.02 6.41 86.22 0.55 3.57 16 13 C -0.12 -2.91 6.06 30.53 0.19 -2.72 16 14 C -0.12 -3.63 5.06 30.62 0.16 -3.48 16 15 C 0.17 5.39 2.78 45.07 0.13 5.52 16 16 H 0.08 2.21 7.82 -2.39 -0.02 2.19 16 17 N -0.60 -24.07 2.06 -677.58 -1.39 -25.46 16 18 C -0.22 -11.16 8.19 84.03 0.69 -10.47 16 19 H 0.04 2.45 6.91 -2.91 -0.02 2.43 16 20 C -0.01 -0.81 5.31 84.86 0.45 -0.35 16 21 N -0.95 -58.30 13.97 21.65 0.30 -58.00 16 22 Si 0.93 43.32 24.94 68.60 1.71 45.03 16 23 H -0.29 -13.45 6.66 99.48 0.66 -12.78 16 24 H -0.32 -15.73 7.11 99.48 0.71 -15.03 16 25 H -0.24 -9.83 7.11 99.48 0.71 -9.12 16 26 C 0.12 4.35 4.90 86.38 0.42 4.77 16 27 C 0.06 2.03 7.39 71.98 0.53 2.56 16 28 O -0.57 -22.63 13.13 -148.98 -1.96 -24.58 16 29 C 0.10 3.17 4.29 86.36 0.37 3.54 16 30 H 0.09 1.77 8.00 -2.39 -0.02 1.75 16 31 H 0.07 1.96 6.03 -2.39 -0.01 1.94 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.16 7.73 -2.38 -0.02 1.15 16 34 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 2.41 7.00 -2.39 -0.02 2.39 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.04 1.68 6.95 -2.38 -0.02 1.66 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.04 1.50 2.90 -2.39 -0.01 1.50 16 48 H 0.09 2.59 7.94 -2.39 -0.02 2.57 16 49 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.37 10.65 9.12 -74.06 -0.68 9.97 16 52 H 0.06 2.37 7.56 -2.39 -0.02 2.36 16 53 H 0.09 2.52 5.07 -2.39 -0.01 2.51 16 Total: -1.00 -72.93 408.59 1.24 -71.69 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.18 Total: 32.10 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.82 Total: 13.33 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.53 Total: -103.70 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -2.94 Total: -58.45 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.71 Total: 45.03 kcal Total: -72.93 1.24 -71.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479650385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.852 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds