Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46696 * 2 1 4 4 O 1.42895 * 109.47231 * 119.99485 * 2 1 3 5 5 C 1.42902 * 114.00175 * 270.00043 * 4 2 1 6 6 C 1.53000 * 109.47281 * 179.97438 * 5 4 2 7 7 H 1.09003 * 110.27418 * 304.36402 * 6 5 4 8 8 C 1.54949 * 110.39778 * 182.21596 * 6 5 4 9 9 C 1.55443 * 100.99333 * 204.64962 * 8 6 5 10 10 C 1.54387 * 102.18799 * 34.03693 * 9 8 6 11 11 O 1.43249 * 107.66171 * 338.74257 * 10 9 8 12 12 C 1.50697 * 109.47160 * 239.99692 * 2 1 3 13 13 O 1.21279 * 119.99813 * 244.99805 * 12 2 1 14 14 N 1.34783 * 119.99926 * 65.00109 * 12 2 1 15 15 C 1.46497 * 119.99675 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.46797 * 175.30802 * 15 14 12 17 17 N 1.46498 * 110.01991 * 55.25074 * 16 15 14 18 18 C 1.36933 * 119.99986 * 62.77395 * 17 16 15 19 19 H 1.08000 * 119.99917 * 353.69342 * 18 17 16 20 20 C 1.38813 * 119.99877 * 173.68779 * 18 17 16 21 21 N 1.31617 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00130 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.46983 * 89.99714 * 22 20 18 24 24 H 1.48498 * 109.46808 * 210.00057 * 22 20 18 25 25 H 1.48501 * 109.46858 * 329.99873 * 22 20 18 26 26 C 1.54269 * 110.02955 * 293.85801 * 16 15 14 27 27 C 1.54966 * 104.15942 * 217.13979 * 26 16 15 28 28 C 1.54890 * 102.77944 * 37.88668 * 27 26 16 29 29 C 1.53876 * 110.03266 * 176.64196 * 16 15 14 30 30 H 1.08994 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46759 * 300.00656 * 1 2 3 32 32 H 1.09000 * 109.47352 * 59.99959 * 1 2 3 33 33 H 1.08999 * 109.47080 * 59.99816 * 5 4 2 34 34 H 1.08998 * 109.47553 * 299.99994 * 5 4 2 35 35 H 1.08999 * 111.12265 * 322.51932 * 8 6 5 36 36 H 1.08995 * 111.12072 * 86.67625 * 8 6 5 37 37 H 1.09002 * 110.83156 * 275.89238 * 9 8 6 38 38 H 1.08992 * 110.92869 * 152.22373 * 9 8 6 39 39 H 1.08993 * 109.82957 * 219.18889 * 10 9 8 40 40 H 1.09000 * 109.82894 * 98.29868 * 10 9 8 41 41 H 0.97003 * 119.99554 * 359.97438 * 14 12 2 42 42 H 1.08997 * 109.47125 * 295.30398 * 15 14 12 43 43 H 1.08996 * 109.47460 * 55.30635 * 15 14 12 44 44 H 0.97003 * 119.99634 * 242.77954 * 17 16 15 45 45 H 0.96999 * 120.00531 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.48884 * 335.78510 * 26 16 15 47 47 H 1.08997 * 110.48757 * 98.42835 * 26 16 15 48 48 H 1.09004 * 110.71952 * 279.57386 * 27 26 16 49 49 H 1.09003 * 110.92050 * 156.29971 * 27 26 16 50 50 H 1.08996 * 110.48679 * 203.40732 * 28 27 26 51 51 H 1.09001 * 110.59225 * 80.81702 * 28 27 26 52 52 H 1.08992 * 110.03633 * 238.56679 * 29 16 15 53 53 H 1.09007 * 110.03233 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2001 0.1831 2.2940 6 6 2.7080 -0.6405 3.4792 7 1 2.0222 -1.4610 3.6905 8 6 2.8727 0.2584 4.7305 9 6 3.9408 -0.5392 5.5300 10 6 4.8096 -1.1397 4.4039 11 8 4.0237 -1.1481 3.2063 12 6 2.0324 -0.7105 -1.2304 13 8 2.6530 -1.7467 -1.1213 14 7 1.7919 -0.1942 -2.4520 15 6 2.2798 -0.8852 -3.6481 16 6 1.7762 -0.1594 -4.8974 17 7 2.1693 1.2510 -4.8506 18 6 3.4954 1.5926 -4.8495 19 1 4.2509 0.8239 -4.7802 20 6 3.8686 2.9267 -4.9375 21 7 5.1431 3.2549 -4.9370 22 14 2.5617 4.2562 -5.0569 23 1 2.1892 4.7079 -3.6923 24 1 3.0948 5.4061 -5.8307 25 1 1.3625 3.7113 -5.7426 26 6 0.2411 -0.2773 -4.9942 27 6 -0.0322 -0.4327 -6.5116 28 6 1.1433 -1.3249 -6.9818 29 6 2.3498 -0.8248 -6.1607 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.2539 0.6549 2.5588 34 1 2.9320 0.9515 2.0450 35 1 3.2442 1.2463 4.4583 36 1 1.9384 0.3318 5.2872 37 1 3.4739 -1.3267 6.1216 38 1 4.5300 0.1249 6.1622 39 1 5.0990 -2.1580 4.6634 40 1 5.6999 -0.5281 4.2577 41 1 1.2952 0.6344 -2.5392 42 1 3.3698 -0.8904 -3.6455 43 1 1.9116 -1.9111 -3.6507 44 1 1.4902 1.9430 -4.8204 45 1 5.4040 4.1872 -4.9981 46 1 -0.1091 -1.1555 -4.4518 47 1 -0.2357 0.6245 -4.6103 48 1 -0.0048 0.5365 -7.0096 49 1 -0.9873 -0.9282 -6.6863 50 1 1.3240 -1.1873 -8.0479 51 1 0.9406 -2.3732 -6.7624 52 1 2.9198 -0.0982 -6.7395 53 1 2.9866 -1.6651 -5.8839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482238541.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -148.829337 kcal Electronic energy + Delta-G solvation = -31010.785912 eV Core-core repulsion = 26881.369929 eV Total energy + Delta-G solvation = -4129.415983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.17301 -40.47815 -39.78735 -38.36967 -35.63216 -35.18817 -33.34299 -33.05572 -32.62311 -31.11373 -29.71368 -29.55258 -26.70394 -26.21278 -24.97016 -24.15448 -22.57623 -22.30635 -21.79462 -21.15781 -20.09349 -19.56005 -18.40993 -18.13358 -17.89529 -17.17179 -16.90413 -16.48155 -16.32398 -16.15318 -15.93306 -15.88185 -15.40132 -15.15760 -14.71434 -14.61800 -14.37340 -14.24502 -14.08856 -13.77236 -13.64354 -13.43902 -13.26958 -13.04624 -12.93181 -12.68046 -12.67896 -12.45390 -12.18991 -12.15015 -12.07705 -11.89283 -11.86003 -11.82184 -11.70140 -11.67966 -11.49360 -11.31959 -11.03360 -10.92063 -10.51148 -10.45793 -9.98714 -9.29274 -7.95591 -5.30943 1.40136 1.45208 1.52784 1.61855 1.92097 2.53292 2.79202 2.92226 3.32149 3.52492 3.54223 3.67865 3.76335 3.86566 3.89576 3.94556 3.95558 4.04919 4.08642 4.14364 4.23977 4.35621 4.40392 4.46764 4.53007 4.55531 4.67100 4.70560 4.71257 4.79761 4.80731 4.84814 4.86428 4.93823 4.95193 4.99482 5.00827 5.09092 5.18849 5.19298 5.22493 5.27425 5.38534 5.42177 5.52973 5.65406 5.89308 6.01105 6.18370 6.27593 6.64103 7.14252 7.28817 7.86888 8.08875 9.26329 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.002845 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.505069 B = 9838.843172 C =10959.751771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.071 3.929 3 H 0.097 0.903 4 O -0.382 6.382 5 C 0.054 3.946 6 C 0.074 3.926 7 H 0.077 0.923 8 C -0.140 4.140 9 C -0.145 4.145 10 C 0.034 3.966 11 O -0.413 6.413 12 C 0.502 3.498 13 O -0.583 6.583 14 N -0.693 5.693 15 C 0.129 3.871 16 C 0.190 3.810 17 N -0.732 5.732 18 C -0.210 4.210 19 H 0.045 0.955 20 C -0.067 4.067 21 N -0.989 5.989 22 Si 0.954 3.046 23 H -0.274 1.274 24 H -0.308 1.308 25 H -0.243 1.243 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.114 4.114 29 C -0.132 4.132 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.409 0.591 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.369 0.631 45 H 0.254 0.746 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.049 0.951 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.440 -4.738 16.184 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.115 0.885 4 O -0.301 6.301 5 C -0.022 4.022 6 C 0.017 3.983 7 H 0.095 0.905 8 C -0.177 4.177 9 C -0.183 4.183 10 C -0.043 4.043 11 O -0.333 6.333 12 C 0.288 3.712 13 O -0.463 6.463 14 N -0.344 5.344 15 C 0.003 3.997 16 C 0.100 3.900 17 N -0.376 5.376 18 C -0.341 4.341 19 H 0.063 0.937 20 C -0.258 4.258 21 N -0.640 5.640 22 Si 0.781 3.219 23 H -0.200 1.200 24 H -0.236 1.236 25 H -0.167 1.167 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.152 4.152 29 C -0.172 4.172 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.246 0.754 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.203 0.797 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.083 0.917 51 H 0.096 0.904 52 H 0.068 0.932 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.674 -5.769 16.048 23.162 hybrid contribution 0.576 1.546 -0.239 1.667 sum -15.098 -4.223 15.808 22.264 Atomic orbital electron populations 1.22198 0.90382 1.03791 1.05182 1.22009 0.97185 0.95927 0.83898 0.88535 1.88054 1.87019 1.35246 1.19776 1.23038 1.01011 0.92632 0.85548 1.23207 0.84920 0.96252 0.93932 0.90546 1.23285 1.01558 0.98864 0.94015 1.23140 0.97097 1.00594 0.97453 1.23361 0.94971 1.01322 0.84613 1.88575 1.24948 1.85991 1.33797 1.21086 0.79237 0.85225 0.85626 1.90663 1.42148 1.26193 1.87260 1.45600 1.56637 1.27586 1.04622 1.21755 0.97115 0.95515 0.85359 1.20668 0.94711 0.83402 0.91237 1.42789 1.03000 1.02267 1.89546 1.18730 0.83843 0.91780 1.39728 0.93736 1.25532 0.97728 0.99608 1.02902 1.69923 1.16950 1.17147 1.59999 0.85427 0.79691 0.78623 0.78116 1.20007 1.23581 1.16712 1.22614 0.92011 1.02963 0.97867 1.22439 0.98508 0.99666 0.94615 1.22306 0.94048 0.99775 0.99078 1.22568 0.98596 0.99090 0.96906 0.91950 0.88726 0.89108 0.88180 0.93346 0.89698 0.86778 0.89169 0.87909 0.91269 0.91474 0.75408 0.96282 0.91377 0.79691 0.93738 0.89412 0.90325 0.92401 0.89172 0.91713 0.90390 0.93235 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.48 71.98 0.68 -2.25 16 2 C 0.07 2.00 3.13 29.85 0.09 2.09 16 3 H 0.10 2.46 7.79 -2.39 -0.02 2.44 16 4 O -0.38 -12.26 9.52 -126.85 -1.21 -13.47 16 5 C 0.05 1.24 5.46 71.98 0.39 1.63 16 6 C 0.07 1.63 3.72 31.26 0.12 1.75 16 7 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 8 C -0.14 -1.81 6.58 32.10 0.21 -1.60 16 9 C -0.15 -1.81 7.03 31.91 0.22 -1.58 16 10 C 0.03 0.69 7.79 72.45 0.56 1.25 16 11 O -0.41 -12.46 11.03 -147.42 -1.63 -14.08 16 12 C 0.50 18.75 7.18 87.65 0.63 19.38 16 13 O -0.58 -27.81 16.51 15.96 0.26 -27.55 16 14 N -0.69 -23.65 5.19 -463.06 -2.40 -26.05 16 15 C 0.13 4.85 4.06 86.38 0.35 5.20 16 16 C 0.19 6.51 0.68 4.33 0.00 6.51 16 17 N -0.73 -30.34 4.32 -300.07 -1.30 -31.63 16 18 C -0.21 -11.32 8.96 84.03 0.75 -10.57 16 19 H 0.04 2.79 7.55 -2.91 -0.02 2.77 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.99 -63.24 13.97 21.65 0.30 -62.94 16 22 Si 0.95 42.90 27.68 68.60 1.90 44.80 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.24 -9.51 6.61 99.48 0.66 -8.86 16 26 C -0.12 -2.87 5.73 31.70 0.18 -2.69 16 27 C -0.11 -2.61 6.91 31.91 0.22 -2.39 16 28 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 29 C -0.13 -4.58 5.92 31.32 0.19 -4.40 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.23 7.87 -2.39 -0.02 1.21 16 32 H 0.09 1.36 7.92 -2.39 -0.02 1.34 16 33 H 0.10 1.47 7.87 -2.39 -0.02 1.45 16 34 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 35 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.41 12.06 7.77 -92.71 -0.72 11.34 16 42 H 0.02 0.89 7.52 -2.39 -0.02 0.87 16 43 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 44 H 0.37 14.16 5.37 -92.71 -0.50 13.66 16 45 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.09 1.90 7.79 -2.39 -0.02 1.88 16 47 H 0.08 1.74 7.71 -2.39 -0.02 1.73 16 48 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.05 2.07 7.32 -2.39 -0.02 2.05 16 53 H 0.05 1.72 7.67 -2.38 -0.02 1.70 16 Total: -1.00 -83.17 416.22 0.85 -82.32 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.38 Total: 42.32 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.29 Total: 6.28 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -3.40 Total: -120.62 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -2.57 Total: -55.10 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.90 Total: 44.80 kcal Total: -83.17 0.85 -82.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482238541.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.507 kcal (2) G-P(sol) polarization free energy of solvation -83.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds