Wall clock time and date at job start Sat Apr 11 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47148 * 2 1 4 4 O 1.42900 * 109.46839 * 240.00471 * 2 1 3 5 5 C 1.42904 * 113.99824 * 90.00206 * 4 2 1 6 6 C 1.53007 * 109.47050 * 179.97438 * 5 4 2 7 7 H 1.08996 * 110.27438 * 54.29499 * 6 5 4 8 8 C 1.54943 * 110.30925 * 176.38824 * 6 5 4 9 9 C 1.55419 * 100.89158 * 155.28649 * 8 6 5 10 10 C 1.54377 * 102.30735 * 325.99307 * 9 8 6 11 11 O 1.43232 * 107.59263 * 21.28101 * 10 9 8 12 12 C 1.50693 * 109.47115 * 120.00454 * 2 1 3 13 13 O 1.21285 * 119.99882 * 120.00394 * 12 2 1 14 14 N 1.34774 * 120.00322 * 299.99569 * 12 2 1 15 15 C 1.46496 * 120.00255 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47285 * 175.47547 * 15 14 12 17 17 N 1.46496 * 110.43366 * 57.40220 * 16 15 14 18 18 C 1.36942 * 120.00127 * 61.59778 * 17 16 15 19 19 H 1.08001 * 119.99851 * 354.15763 * 18 17 16 20 20 C 1.38815 * 120.00240 * 174.15920 * 18 17 16 21 21 N 1.31620 * 119.99570 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46883 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.47204 * 300.00041 * 22 20 18 25 25 H 1.48501 * 109.46978 * 60.00334 * 22 20 18 26 26 C 1.54883 * 110.48815 * 179.97438 * 16 15 14 27 27 C 1.55233 * 102.58952 * 156.67561 * 26 16 15 28 28 C 1.54265 * 104.23192 * 322.08711 * 27 26 16 29 29 C 1.53870 * 106.59804 * 23.60638 * 28 27 26 30 30 H 1.09005 * 109.47431 * 299.99446 * 1 2 3 31 31 H 1.09006 * 109.47535 * 59.99293 * 1 2 3 32 32 H 1.09002 * 109.47394 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47171 * 299.99583 * 5 4 2 34 34 H 1.08995 * 109.47494 * 59.99777 * 5 4 2 35 35 H 1.08997 * 111.12611 * 273.27802 * 8 6 5 36 36 H 1.09003 * 111.12683 * 37.43981 * 8 6 5 37 37 H 1.09003 * 110.88049 * 207.74788 * 9 8 6 38 38 H 1.09002 * 110.92984 * 84.25372 * 9 8 6 39 39 H 1.09001 * 109.82625 * 261.76856 * 10 9 8 40 40 H 1.08999 * 109.90266 * 140.84448 * 10 9 8 41 41 H 0.96998 * 119.99873 * 0.02562 * 14 12 2 42 42 H 1.08999 * 109.47220 * 55.47772 * 15 14 12 43 43 H 1.09000 * 109.47582 * 295.47522 * 15 14 12 44 44 H 0.97005 * 120.00493 * 241.59761 * 17 16 15 45 45 H 0.97000 * 119.99676 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.76151 * 275.06887 * 26 16 15 47 47 H 1.09007 * 110.75345 * 38.44023 * 26 16 15 48 48 H 1.09007 * 110.47281 * 203.39706 * 27 26 16 49 49 H 1.09008 * 110.58288 * 80.83336 * 27 26 16 50 50 H 1.08998 * 110.03144 * 264.32367 * 28 27 26 51 51 H 1.09008 * 110.07363 * 142.91623 * 28 27 26 52 52 H 1.08996 * 110.03658 * 240.71436 * 29 28 27 53 53 H 1.09008 * 110.03170 * 119.28230 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2000 0.1832 -2.2941 6 6 2.7089 -0.6403 -3.4790 7 1 2.0363 -1.4751 -3.6755 8 6 2.8395 0.2531 -4.7382 9 6 3.9142 -0.5295 -5.5433 10 6 4.8088 -1.1053 -4.4247 11 8 4.0372 -1.1210 -3.2181 12 6 2.0323 -0.7105 1.2303 13 8 2.7296 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1946 -0.9411 3.6506 16 6 1.7799 -0.1572 4.8973 17 7 0.3245 0.0044 4.9392 18 6 -0.4852 -1.0978 5.0076 19 1 -0.0578 -2.0871 4.9356 20 6 -1.8552 -0.9437 5.1694 21 7 -2.3761 0.2619 5.2566 22 14 -2.9597 -2.4473 5.2619 23 1 -4.3702 -2.0155 5.4343 24 1 -2.8327 -3.2328 4.0081 25 1 -2.5546 -3.2888 6.4165 26 6 2.2840 -0.8686 6.1775 27 6 2.3332 0.2890 7.2107 28 6 2.8282 1.5026 6.3972 29 6 2.4765 1.2189 4.9263 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2537 0.6549 -2.5588 34 1 2.9318 0.9515 -2.0450 35 1 1.8972 0.3034 -5.2836 36 1 3.1941 1.2503 -4.4773 37 1 4.4821 0.1417 -6.1877 38 1 3.4579 -1.3299 -6.1259 39 1 5.6881 -0.4746 -4.2932 40 1 5.1162 -2.1193 -4.6804 41 1 1.1489 0.5383 2.5436 42 1 3.2816 -1.0124 3.6111 43 1 1.7662 -1.9426 3.6919 44 1 -0.0657 0.8923 4.9185 45 1 -3.3334 0.3696 5.3701 46 1 1.5821 -1.6410 6.4921 47 1 3.2774 -1.2887 6.0202 48 1 3.0343 0.0553 8.0120 49 1 1.3405 0.4818 7.6177 50 1 3.9069 1.6120 6.5087 51 1 2.3245 2.4090 6.7334 52 1 3.3844 1.1906 4.3240 53 1 1.8013 1.9870 4.5489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482238543.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:40 Heat of formation + Delta-G solvation = -150.996550 kcal Electronic energy + Delta-G solvation = -30923.109461 eV Core-core repulsion = 26793.599500 eV Total energy + Delta-G solvation = -4129.509960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12104 -40.44257 -39.67987 -38.35065 -35.55098 -35.12427 -33.31318 -32.96625 -32.17616 -31.05638 -29.51918 -29.39567 -26.68541 -26.22877 -25.32692 -24.22605 -22.55676 -22.28793 -21.62867 -20.90646 -20.17503 -18.94586 -18.36700 -18.10650 -17.85960 -17.07870 -16.92066 -16.62610 -16.18810 -16.08248 -15.89811 -15.75043 -15.42437 -15.17238 -14.94416 -14.60953 -14.37964 -14.13249 -13.94994 -13.60593 -13.48800 -13.29085 -13.12039 -13.03976 -12.87774 -12.66636 -12.45768 -12.38186 -12.34642 -12.28196 -12.15631 -12.06229 -11.92032 -11.73196 -11.68165 -11.56795 -11.40333 -11.16324 -11.01023 -10.86313 -10.49109 -10.43823 -9.94210 -8.93407 -7.89191 -5.14207 1.45843 1.47297 1.51955 1.61608 1.97701 2.57576 2.81775 2.93640 3.41467 3.55068 3.70789 3.78252 3.86142 3.88132 3.91575 3.96939 3.97396 4.07364 4.13541 4.15257 4.26133 4.38058 4.46259 4.48659 4.58133 4.61515 4.67742 4.68550 4.75769 4.81570 4.81711 4.88185 4.88641 4.97328 4.98981 5.01104 5.06744 5.14704 5.19306 5.22950 5.23982 5.24111 5.41874 5.48937 5.57034 5.64412 5.70286 6.03936 6.20011 6.34578 6.66820 7.30587 7.42521 8.15107 8.41299 9.32768 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002665 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.945556 B =10504.498172 C =11839.679388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.384 6.384 5 C 0.054 3.946 6 C 0.073 3.927 7 H 0.067 0.933 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.035 3.965 11 O -0.409 6.409 12 C 0.502 3.498 13 O -0.583 6.583 14 N -0.692 5.692 15 C 0.127 3.873 16 C 0.184 3.816 17 N -0.708 5.708 18 C -0.214 4.214 19 H 0.060 0.940 20 C -0.060 4.060 21 N -0.958 5.958 22 Si 0.947 3.053 23 H -0.296 1.296 24 H -0.290 1.290 25 H -0.286 1.286 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.112 4.112 29 C -0.116 4.116 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.409 0.591 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.378 0.622 45 H 0.248 0.752 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.080 0.920 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.118 7.747 -17.251 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.134 0.866 4 O -0.303 6.303 5 C -0.022 4.022 6 C 0.016 3.984 7 H 0.085 0.915 8 C -0.176 4.176 9 C -0.185 4.185 10 C -0.041 4.041 11 O -0.330 6.330 12 C 0.288 3.712 13 O -0.463 6.463 14 N -0.344 5.344 15 C 0.000 4.000 16 C 0.093 3.907 17 N -0.348 5.348 18 C -0.346 4.346 19 H 0.078 0.922 20 C -0.253 4.253 21 N -0.609 5.609 22 Si 0.779 3.221 23 H -0.222 1.222 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.170 4.170 27 C -0.147 4.147 28 C -0.150 4.150 29 C -0.154 4.154 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.211 0.789 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.060 0.940 50 H 0.099 0.901 51 H 0.080 0.920 52 H 0.098 0.902 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.655 6.627 -17.108 22.288 hybrid contribution -1.548 -0.546 0.295 1.667 sum 11.108 6.080 -16.813 21.049 Atomic orbital electron populations 1.22197 0.92393 1.02846 1.04642 1.21904 0.95545 0.96760 0.83968 0.86554 1.88077 1.86769 1.35554 1.19863 1.23045 1.01063 0.92730 0.85354 1.23168 0.84577 0.96432 0.94237 0.91519 1.23268 1.01408 0.99193 0.93724 1.23136 0.96940 1.00772 0.97648 1.23354 0.95166 1.01310 0.84276 1.88555 1.24127 1.86965 1.33329 1.21046 0.79936 0.84607 0.85612 1.90659 1.40099 1.28120 1.87378 1.45654 1.52365 1.31914 1.04445 1.21717 0.97394 0.95579 0.85283 1.20836 0.84187 0.94396 0.91256 1.42417 0.99495 1.05343 1.87550 1.19157 0.88617 0.87909 1.38900 0.92237 1.25168 0.98051 0.97835 1.04276 1.69739 1.11079 1.20944 1.59122 0.85614 0.78577 0.80403 0.77549 1.22184 1.21680 1.21268 1.22892 0.99891 0.98015 0.96186 1.22199 1.00086 0.94937 0.97486 1.22037 1.01284 0.97685 0.93980 1.22329 1.00074 0.95161 0.97814 0.90417 0.88465 0.93660 0.88830 0.91919 0.87368 0.88964 0.87671 0.89778 0.90740 0.91574 0.75448 0.91675 0.95281 0.78867 0.94279 0.93602 0.90744 0.90827 0.94024 0.90116 0.92014 0.90155 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 9.42 71.98 0.68 -3.55 16 2 C 0.08 2.25 3.14 29.84 0.09 2.34 16 3 H 0.12 2.45 7.79 -2.39 -0.02 2.43 16 4 O -0.38 -12.16 9.52 -127.37 -1.21 -13.37 16 5 C 0.05 1.15 5.45 71.98 0.39 1.54 16 6 C 0.07 1.53 3.72 31.26 0.12 1.64 16 7 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 8 C -0.14 -1.58 6.58 32.09 0.21 -1.37 16 9 C -0.15 -1.59 7.02 31.89 0.22 -1.37 16 10 C 0.04 0.62 7.80 72.45 0.56 1.19 16 11 O -0.41 -11.21 11.04 -148.29 -1.64 -12.85 16 12 C 0.50 18.70 7.23 87.66 0.63 19.33 16 13 O -0.58 -27.32 16.50 15.99 0.26 -27.05 16 14 N -0.69 -24.07 5.13 -463.08 -2.38 -26.45 16 15 C 0.13 4.73 4.33 86.38 0.37 5.10 16 16 C 0.18 6.54 0.52 4.68 0.00 6.54 16 17 N -0.71 -31.26 4.68 -298.51 -1.40 -32.66 16 18 C -0.21 -11.04 8.55 84.03 0.72 -10.32 16 19 H 0.06 3.17 7.12 -2.91 -0.02 3.15 16 20 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 21 N -0.96 -54.79 13.07 21.65 0.28 -54.50 16 22 Si 0.95 45.96 29.55 68.60 2.03 47.99 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 C -0.13 -4.46 5.91 32.00 0.19 -4.27 16 27 C -0.11 -3.34 6.80 31.79 0.22 -3.12 16 28 C -0.11 -2.91 6.80 31.32 0.21 -2.70 16 29 C -0.12 -3.27 5.72 31.32 0.18 -3.09 16 30 H 0.08 2.06 7.56 -2.38 -0.02 2.04 16 31 H 0.10 1.85 7.87 -2.38 -0.02 1.83 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.36 7.87 -2.39 -0.02 1.34 16 34 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 37 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.41 13.07 7.48 -92.71 -0.69 12.38 16 42 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 43 H 0.03 1.28 7.42 -2.39 -0.02 1.26 16 44 H 0.38 17.78 7.48 -92.70 -0.69 17.08 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.05 1.84 7.23 -2.38 -0.02 1.82 16 47 H 0.07 2.23 8.06 -2.38 -0.02 2.21 16 48 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 52 H 0.08 2.00 7.79 -2.39 -0.02 1.98 16 53 H 0.07 1.87 7.74 -2.38 -0.02 1.85 16 Total: -1.00 -73.68 418.83 0.73 -72.95 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.49 Total: 40.89 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.27 Total: 5.06 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -3.49 Total: -113.62 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -2.59 Total: -53.27 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.68 0.73 -72.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482238543.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.046 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds