Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47556 * 2 1 4 4 O 1.42897 * 109.46991 * 119.99962 * 2 1 3 5 5 C 1.42905 * 114.00296 * 269.99746 * 4 2 1 6 6 C 1.52992 * 109.47191 * 179.97438 * 5 4 2 7 7 H 1.09003 * 110.27958 * 55.64149 * 6 5 4 8 8 C 1.54950 * 110.30773 * 177.83614 * 6 5 4 9 9 C 1.55311 * 100.94236 * 155.36040 * 8 6 5 10 10 C 1.54377 * 102.25087 * 325.86821 * 9 8 6 11 11 O 1.43240 * 107.59139 * 21.35456 * 10 9 8 12 12 C 1.50698 * 109.47190 * 239.99886 * 2 1 3 13 13 O 1.21280 * 120.00392 * 245.00223 * 12 2 1 14 14 N 1.34772 * 119.99996 * 64.99849 * 12 2 1 15 15 C 1.46934 * 120.63155 * 180.02562 * 14 12 2 16 16 C 1.53191 * 108.77484 * 233.63314 * 15 14 12 17 17 C 1.53040 * 109.31293 * 305.36503 * 16 15 14 18 18 N 1.46506 * 109.46222 * 181.38670 * 17 16 15 19 19 C 1.46491 * 119.99840 * 299.97503 * 18 17 16 20 20 C 1.36932 * 120.00103 * 119.97060 * 18 17 16 21 21 H 1.08008 * 120.00083 * 336.20392 * 20 18 17 22 22 C 1.38812 * 120.00279 * 156.20253 * 20 18 17 23 23 N 1.31618 * 119.99554 * 330.09394 * 22 20 18 24 24 Si 1.86797 * 120.00029 * 150.36501 * 22 20 18 25 25 H 1.48501 * 109.47013 * 179.72476 * 24 22 20 26 26 H 1.48499 * 109.47361 * 299.72486 * 24 22 20 27 27 H 1.48499 * 109.47107 * 59.72773 * 24 22 20 28 28 C 1.53037 * 109.52718 * 61.37417 * 17 16 15 29 29 C 1.46927 * 120.63008 * 0.02743 * 14 12 2 30 30 H 1.09005 * 109.47369 * 59.99897 * 1 2 3 31 31 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47517 * 300.00008 * 1 2 3 33 33 H 1.08999 * 109.46668 * 300.00368 * 5 4 2 34 34 H 1.09001 * 109.46732 * 60.00221 * 5 4 2 35 35 H 1.09004 * 111.12086 * 273.27540 * 8 6 5 36 36 H 1.08995 * 111.12236 * 37.43919 * 8 6 5 37 37 H 1.08999 * 110.84495 * 207.67414 * 9 8 6 38 38 H 1.08998 * 110.84434 * 84.05572 * 9 8 6 39 39 H 1.09007 * 109.82938 * 261.84227 * 10 9 8 40 40 H 1.09000 * 109.90946 * 140.91451 * 10 9 8 41 41 H 1.08998 * 109.58433 * 113.84951 * 15 14 12 42 42 H 1.08995 * 109.58671 * 353.42163 * 15 14 12 43 43 H 1.09002 * 109.49852 * 185.41163 * 16 15 14 44 44 H 1.08999 * 109.49988 * 65.31540 * 16 15 14 45 45 H 1.09002 * 109.46392 * 301.35549 * 17 16 15 46 46 H 1.08998 * 109.47378 * 272.98022 * 19 18 17 47 47 H 1.09006 * 109.47467 * 32.98276 * 19 18 17 48 48 H 1.09001 * 109.47589 * 152.98144 * 19 18 17 49 49 H 0.96998 * 119.99874 * 354.91177 * 23 22 20 50 50 H 1.08998 * 109.50237 * 58.58212 * 28 17 16 51 51 H 1.09004 * 109.49713 * 178.67658 * 28 17 16 52 52 H 1.09008 * 109.58313 * 246.14947 * 29 14 12 53 53 H 1.08997 * 109.58925 * 6.43598 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7078 -0.6408 3.4792 7 1 3.6138 -1.1806 3.2035 8 6 2.9765 0.2784 4.6973 9 6 2.8308 -0.7325 5.8673 10 6 1.7303 -1.6811 5.3454 11 8 1.6945 -1.5592 3.9187 12 6 2.0323 -0.7104 -1.2304 13 8 2.6529 -1.7467 -1.1215 14 7 1.7919 -0.1942 -2.4519 15 6 2.2747 -0.8756 -3.6609 16 6 3.0892 0.1182 -4.4949 17 6 2.2413 1.3620 -4.7707 18 7 3.0055 2.3007 -5.5961 19 6 4.2760 2.8404 -5.1060 20 6 2.5321 2.6733 -6.8258 21 1 1.8431 2.0326 -7.3561 22 6 2.9379 3.8745 -7.3909 23 7 3.2540 4.8918 -6.6179 24 14 3.0278 4.0496 -9.2485 25 1 3.4788 5.4214 -9.5951 26 1 3.9912 3.0594 -9.7930 27 1 1.6848 3.8074 -9.8341 28 6 1.8711 2.0328 -3.4458 29 6 1.0420 1.0605 -2.6000 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.9319 0.9513 2.0450 34 1 1.2538 0.6547 2.5589 35 1 3.9833 0.6945 4.6608 36 1 2.2290 1.0687 4.7654 37 1 2.5082 -0.2278 6.7780 38 1 3.7630 -1.2729 6.0314 39 1 0.7659 -1.3951 5.7653 40 1 1.9641 -2.7090 5.6229 41 1 1.4251 -1.2315 -4.2437 42 1 2.9053 -1.7184 -3.3781 43 1 3.3724 -0.3459 -5.4397 44 1 3.9866 0.4041 -3.9462 45 1 1.3321 1.0723 -5.2975 46 1 4.0858 3.7321 -4.5086 47 1 4.7763 2.0916 -4.4918 48 1 4.9117 3.0994 -5.9527 49 1 3.1334 4.8270 -5.6576 50 1 2.7800 2.3004 -2.9071 51 1 1.2870 2.9316 -3.6438 52 1 0.0920 0.8621 -3.0965 53 1 0.8570 1.4939 -1.6172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506966448.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -122.141062 kcal Electronic energy + Delta-G solvation = -30908.100915 eV Core-core repulsion = 26779.842223 eV Total energy + Delta-G solvation = -4128.258693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.58017 -40.49602 -39.35429 -38.35956 -36.96043 -34.36617 -33.33088 -33.03399 -31.89696 -31.44343 -30.73040 -28.17722 -26.93255 -26.35980 -24.98505 -24.17938 -23.34271 -22.54550 -22.30430 -21.33334 -20.01247 -19.42102 -18.58086 -18.08222 -17.67815 -17.04541 -16.73632 -16.57793 -16.40207 -15.97016 -15.83036 -15.60696 -15.45468 -15.29742 -15.03486 -14.73177 -14.53577 -14.24917 -14.07080 -13.83312 -13.57979 -13.47106 -13.35381 -13.15436 -12.88345 -12.81607 -12.67829 -12.50902 -12.46791 -12.33808 -12.23177 -12.19492 -12.07703 -11.90878 -11.79953 -11.70900 -11.64826 -11.28070 -10.97103 -10.52656 -10.48972 -10.40760 -9.76290 -8.95205 -8.24152 -5.32902 1.47221 1.59604 1.65730 1.66487 1.85028 2.63601 2.66867 2.85731 3.21018 3.33882 3.49561 3.53607 3.72936 3.83210 3.90945 3.95182 3.97283 4.00252 4.08136 4.12170 4.21314 4.23927 4.28963 4.35587 4.44791 4.45153 4.56077 4.58061 4.62129 4.66564 4.73609 4.76321 4.77906 4.80423 4.84651 4.87619 4.94771 4.95667 4.98608 4.99735 5.10617 5.17168 5.22123 5.26907 5.39410 5.53116 5.86873 5.97876 6.13406 6.33351 6.41918 7.05836 7.08316 7.81334 8.22091 9.02281 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.002060 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.235042 B =13586.240493 C =14005.490530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.109 0.891 4 O -0.382 6.382 5 C 0.055 3.945 6 C 0.076 3.924 7 H 0.062 0.938 8 C -0.142 4.142 9 C -0.149 4.149 10 C 0.037 3.963 11 O -0.403 6.403 12 C 0.511 3.489 13 O -0.575 6.575 14 N -0.602 5.602 15 C 0.122 3.878 16 C -0.131 4.131 17 C 0.174 3.826 18 N -0.613 5.613 19 C 0.150 3.850 20 C -0.359 4.359 21 H 0.053 0.947 22 C -0.072 4.072 23 N -0.938 5.938 24 Si 1.107 2.893 25 H -0.294 1.294 26 H -0.285 1.285 27 H -0.275 1.275 28 C -0.138 4.138 29 C 0.110 3.890 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.060 0.940 46 H -0.003 1.003 47 H 0.039 0.961 48 H 0.020 0.980 49 H 0.257 0.743 50 H 0.051 0.949 51 H 0.064 0.936 52 H 0.092 0.908 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -7.682 24.175 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.301 6.301 5 C -0.021 4.021 6 C 0.018 3.982 7 H 0.080 0.920 8 C -0.179 4.179 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.324 6.324 12 C 0.300 3.700 13 O -0.454 6.454 14 N -0.336 5.336 15 C 0.000 4.000 16 C -0.171 4.171 17 C 0.067 3.933 18 N -0.336 5.336 19 C 0.004 3.996 20 C -0.489 4.489 21 H 0.071 0.929 22 C -0.270 4.270 23 N -0.580 5.580 24 Si 0.932 3.068 25 H -0.221 1.221 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.178 4.178 29 C -0.012 4.012 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.015 0.985 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.083 0.917 52 H 0.110 0.890 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.783 -7.515 22.860 24.534 hybrid contribution 0.002 -0.663 1.033 1.227 sum -4.781 -8.178 23.894 25.703 Atomic orbital electron populations 1.22387 0.91550 1.03643 1.05191 1.21974 0.96603 0.96352 0.83877 0.87354 1.88071 1.86879 1.35524 1.19642 1.23013 1.01558 0.92609 0.84903 1.23099 0.90827 0.90319 0.93942 0.92008 1.23260 1.04682 0.98074 0.91886 1.23125 0.99327 0.96767 0.99432 1.23349 1.00116 1.00192 0.80259 1.88506 1.56137 1.65319 1.22401 1.20987 0.78897 0.85020 0.85116 1.90666 1.42275 1.25710 1.86720 1.48153 1.55155 1.25059 1.05197 1.21528 0.98868 0.94911 0.84728 1.22238 0.98823 0.96666 0.99365 1.20517 0.93437 0.88822 0.90523 1.44188 1.19611 1.52064 1.17708 1.20691 0.87346 0.95076 0.96450 1.20142 1.30294 1.03455 0.94999 0.92929 1.26963 0.99909 0.90633 1.09483 1.70909 1.51113 1.29733 1.06211 0.82956 0.77148 0.75272 0.71403 1.22060 1.21175 1.20050 1.22340 0.99929 0.98715 0.96787 1.22144 0.94605 0.82345 1.02105 0.88579 0.92623 0.89203 0.90106 0.90839 0.87991 0.88771 0.87680 0.90026 0.90363 0.91449 0.89792 0.90342 0.91473 0.93296 0.92148 0.98520 0.94270 0.96113 0.93307 0.93067 0.91700 0.89021 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.10 71.98 0.65 -2.26 16 2 C 0.07 1.65 2.30 29.85 0.07 1.72 16 3 H 0.11 1.89 7.08 -2.39 -0.02 1.87 16 4 O -0.38 -10.36 9.52 -126.86 -1.21 -11.57 16 5 C 0.06 1.02 5.46 71.98 0.39 1.41 16 6 C 0.08 1.40 3.73 31.26 0.12 1.52 16 7 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.14 -1.44 6.57 32.05 0.21 -1.23 16 9 C -0.15 -1.36 7.02 31.86 0.22 -1.13 16 10 C 0.04 0.53 7.79 72.45 0.56 1.10 16 11 O -0.40 -9.22 11.03 -147.42 -1.63 -10.85 16 12 C 0.51 15.38 7.12 87.66 0.62 16.00 16 13 O -0.57 -22.63 15.92 15.96 0.25 -22.38 16 14 N -0.60 -16.27 2.97 -818.81 -2.43 -18.70 16 15 C 0.12 3.55 6.43 86.36 0.56 4.11 16 16 C -0.13 -4.39 5.30 30.67 0.16 -4.23 16 17 C 0.17 6.53 2.56 45.02 0.12 6.64 16 18 N -0.61 -29.39 2.68 -702.63 -1.88 -31.27 16 19 C 0.15 7.09 8.09 127.77 1.03 8.12 16 20 C -0.36 -19.47 9.39 84.03 0.79 -18.68 16 21 H 0.05 2.85 7.95 -2.91 -0.02 2.83 16 22 C -0.07 -4.04 4.60 84.86 0.39 -3.65 16 23 N -0.94 -55.94 12.75 21.65 0.28 -55.66 16 24 Si 1.11 50.33 30.01 68.60 2.06 52.39 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C -0.14 -4.28 5.34 30.69 0.16 -4.12 16 29 C 0.11 2.47 4.98 86.38 0.43 2.90 16 30 H 0.10 1.30 5.41 -2.38 -0.01 1.29 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.18 7.87 -2.39 -0.02 1.16 16 33 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.74 8.06 -2.39 -0.02 0.72 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.08 2.47 7.00 -2.39 -0.02 2.45 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.05 1.74 6.74 -2.39 -0.02 1.73 16 45 H 0.06 2.33 7.87 -2.39 -0.02 2.31 16 46 H 0.00 -0.16 6.87 -2.39 -0.02 -0.18 16 47 H 0.04 1.63 6.47 -2.38 -0.02 1.61 16 48 H 0.02 1.06 7.28 -2.39 -0.02 1.05 16 49 H 0.26 15.46 6.39 -92.71 -0.59 14.87 16 50 H 0.05 1.67 7.72 -2.39 -0.02 1.66 16 51 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 52 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 53 H 0.11 1.85 4.66 -2.39 -0.01 1.84 16 Total: -1.00 -76.44 404.87 2.99 -73.45 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.06 Total: 16.39 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.50 Total: 8.20 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.04 Total: -105.64 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -2.58 Total: -44.79 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.06 Total: 52.39 kcal Total: -76.44 2.99 -73.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506966448.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.695 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds