Wall clock time and date at job start Sat Apr 11 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46849 * 2 1 4 4 C 1.52993 * 109.47138 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47174 * 294.99595 * 4 2 1 6 6 O 1.42896 * 109.47061 * 180.02562 * 5 4 2 7 7 C 1.42902 * 113.99757 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47374 * 29.99663 * 7 6 5 9 9 C 1.52997 * 109.46813 * 269.99740 * 7 6 5 10 10 C 1.50707 * 109.47307 * 149.99845 * 7 6 5 11 11 O 1.21287 * 119.99660 * 5.00042 * 10 7 6 12 12 N 1.34774 * 120.00051 * 184.99765 * 10 7 6 13 13 C 1.46504 * 119.99809 * 180.02562 * 12 10 7 14 14 H 1.08995 * 110.45507 * 327.59688 * 13 12 10 15 15 C 1.54548 * 110.50713 * 90.34557 * 13 12 10 16 16 O 1.44633 * 105.02933 * 95.01675 * 15 13 12 17 17 C 1.43238 * 105.22908 * 39.02459 * 16 15 13 18 18 C 1.52892 * 115.83820 * 90.92080 * 17 16 15 19 19 N 1.47788 * 85.78287 * 94.51782 * 18 17 16 20 20 C 1.36933 * 134.40060 * 203.88055 * 19 18 17 21 21 H 1.08004 * 119.99784 * 173.50611 * 20 19 18 22 22 C 1.38814 * 120.00056 * 353.49662 * 20 19 18 23 23 N 1.31614 * 119.99901 * 5.10084 * 22 20 19 24 24 Si 1.86799 * 119.99988 * 185.09009 * 22 20 19 25 25 H 1.48502 * 109.46722 * 94.98985 * 24 22 20 26 26 H 1.48493 * 109.47294 * 214.99036 * 24 22 20 27 27 H 1.48506 * 109.47111 * 334.99426 * 24 22 20 28 28 C 1.47791 * 91.19356 * 23.87436 * 19 18 17 29 29 C 1.53474 * 106.26032 * 321.06194 * 17 16 15 30 30 H 1.08997 * 109.47349 * 300.00031 * 1 2 3 31 31 H 1.08998 * 109.47057 * 60.00115 * 1 2 3 32 32 H 1.08998 * 109.46807 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47057 * 119.99885 * 2 1 3 34 34 H 1.08998 * 109.46741 * 300.00076 * 3 2 1 35 35 H 1.08997 * 109.47170 * 59.99859 * 3 2 1 36 36 H 1.08995 * 109.47059 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47305 * 54.99580 * 4 2 1 38 38 H 1.09004 * 109.47093 * 174.99730 * 4 2 1 39 39 H 1.08994 * 109.46971 * 300.00159 * 5 4 2 40 40 H 1.08996 * 109.46719 * 60.00062 * 5 4 2 41 41 H 1.09001 * 109.47229 * 299.99672 * 9 7 6 42 42 H 1.09002 * 109.47458 * 60.00130 * 9 7 6 43 43 H 1.09001 * 109.46957 * 180.02562 * 9 7 6 44 44 H 0.97002 * 119.99679 * 359.97438 * 12 10 7 45 45 H 1.08997 * 110.32545 * 213.90289 * 15 13 12 46 46 H 1.08997 * 110.32998 * 336.12620 * 15 13 12 47 47 H 1.09000 * 113.82200 * 208.72984 * 18 17 16 48 48 H 1.08995 * 113.82157 * 340.29968 * 18 17 16 49 49 H 0.97000 * 119.99905 * 179.97438 * 23 22 20 50 50 H 1.08998 * 113.81788 * 221.91602 * 28 19 18 51 51 H 1.08996 * 113.93428 * 90.35710 * 28 19 18 52 52 H 1.08992 * 110.57587 * 264.15163 * 29 17 16 53 53 H 1.09004 * 110.70110 * 141.32734 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 -2.1955 -1.1879 6 8 2.1122 -2.8691 -2.3544 7 6 1.7854 -4.2596 -2.3969 8 1 0.8478 -4.4289 -1.8675 9 6 2.9009 -5.0663 -1.7292 10 6 1.6384 -4.6976 -3.8314 11 8 1.8861 -3.9222 -4.7306 12 7 1.2318 -5.9508 -4.1152 13 6 1.0894 -6.3767 -5.5097 14 1 0.7838 -5.5377 -6.1348 15 6 2.4114 -6.9878 -6.0268 16 8 2.2658 -8.4139 -5.8347 17 6 0.9033 -8.7015 -6.1703 18 6 0.6404 -9.0706 -7.6305 19 7 0.7668 -10.4739 -7.1848 20 6 1.0893 -11.6510 -7.8058 21 1 1.2156 -12.5518 -7.2234 22 6 1.2537 -11.6865 -9.1837 23 7 1.1990 -10.5722 -9.8819 24 14 1.5527 -13.3159 -10.0469 25 1 0.2619 -13.8577 -10.5425 26 1 2.4744 -13.1073 -11.1924 27 1 2.1594 -14.2779 -9.0921 28 6 0.4065 -10.0995 -5.8013 29 6 0.0701 -7.5355 -5.6212 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.6053 -0.2617 -2.1370 38 1 3.1264 -0.6442 -1.2951 39 1 2.0700 -2.6549 -0.3003 40 1 0.5491 -2.2724 -1.1420 41 1 3.8385 -4.8971 -2.2587 42 1 3.0072 -4.7496 -0.6916 43 1 2.6518 -6.1269 -1.7620 44 1 1.0341 -6.5710 -3.3960 45 1 2.5458 -6.7599 -7.0842 46 1 3.2546 -6.6117 -5.4474 47 1 -0.3586 -8.8074 -7.9781 48 1 1.4281 -8.7528 -8.3136 49 1 1.3142 -10.5969 -10.8447 50 1 1.0096 -10.5943 -5.0401 51 1 -0.6627 -10.1465 -5.5947 52 1 -0.3367 -7.7836 -4.6409 53 1 -0.7314 -7.2754 -6.3127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570249506.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:36 Heat of formation + Delta-G solvation = -105.022377 kcal Electronic energy + Delta-G solvation = -29996.304511 eV Core-core repulsion = 25868.788140 eV Total energy + Delta-G solvation = -4127.516371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72163 -40.70556 -39.05514 -37.73521 -37.05784 -35.57490 -34.14047 -33.05330 -31.35317 -30.03124 -29.62946 -28.01260 -27.58910 -26.65550 -25.60053 -24.09539 -23.78235 -22.35005 -21.54915 -20.84141 -20.54966 -18.75416 -18.37750 -18.15652 -17.29295 -17.04468 -16.90330 -16.70489 -16.37434 -16.08990 -15.80997 -15.42505 -15.14310 -15.11481 -14.70314 -14.64713 -14.53627 -14.40062 -13.96410 -13.47008 -13.31310 -13.24998 -13.17743 -13.00992 -12.98442 -12.91820 -12.85172 -12.70951 -12.56299 -12.41364 -12.29504 -12.16864 -11.97198 -11.72307 -11.68918 -11.52692 -11.49323 -11.28564 -10.94079 -10.92167 -10.66345 -10.43471 -10.02753 -8.91331 -7.91680 -5.23494 1.44134 1.46365 1.52828 1.55317 1.80104 2.46873 2.83103 2.87022 3.26612 3.41463 3.53018 3.64349 3.71332 3.83221 3.91071 3.92775 3.99820 4.05855 4.07242 4.13863 4.31224 4.32928 4.46024 4.55656 4.56584 4.66513 4.69015 4.75126 4.77431 4.80213 4.81901 4.84330 4.88741 4.94574 4.95502 4.95562 5.03175 5.09942 5.12782 5.19967 5.22223 5.26229 5.32397 5.43756 5.45519 5.50969 5.51241 5.91879 6.09420 6.15070 6.54843 6.91005 7.20304 7.60387 8.55245 9.26112 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.039731 B = 0.001699 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.572318 B =16473.798219 C =16536.150646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.114 4.114 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.075 3.925 8 H 0.120 0.880 9 C -0.167 4.167 10 C 0.510 3.490 11 O -0.572 6.572 12 N -0.699 5.699 13 C 0.125 3.875 14 H 0.097 0.903 15 C 0.035 3.965 16 O -0.361 6.361 17 C 0.073 3.927 18 C 0.148 3.852 19 N -0.641 5.641 20 C -0.233 4.233 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.978 3.022 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.132 3.868 29 C -0.128 4.128 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.419 0.581 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.036 0.964 48 H 0.029 0.971 49 H 0.247 0.753 50 H 0.057 0.943 51 H 0.080 0.920 52 H 0.118 0.882 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 19.412 26.024 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.021 4.021 6 O -0.310 6.310 7 C 0.014 3.986 8 H 0.137 0.863 9 C -0.224 4.224 10 C 0.296 3.704 11 O -0.450 6.450 12 N -0.353 5.353 13 C 0.020 3.980 14 H 0.115 0.885 15 C -0.042 4.042 16 O -0.280 6.280 17 C 0.032 3.968 18 C 0.022 3.978 19 N -0.367 5.367 20 C -0.361 4.361 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.604 5.604 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.191 1.191 28 C 0.008 3.992 29 C -0.167 4.167 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.257 0.743 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.097 0.903 52 H 0.136 0.864 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.595 19.700 25.082 31.999 hybrid contribution 0.117 -1.046 -1.082 1.509 sum -2.478 18.654 24.000 30.498 Atomic orbital electron populations 1.21941 0.94786 1.02207 1.02040 1.21029 0.96230 0.96378 0.97124 1.21839 1.01110 0.95537 1.02082 1.21578 1.01472 0.93243 0.98830 1.22879 0.98839 0.93056 0.87326 1.88020 1.78443 1.20406 1.44150 1.21988 1.01528 0.83481 0.91585 0.86260 1.22243 0.97561 1.00769 1.01858 1.21119 0.75720 0.81651 0.91861 1.90717 1.50385 1.54208 1.49713 1.45867 1.68311 1.13049 1.08122 1.22151 0.94587 0.97643 0.83654 0.88496 1.23886 0.98967 0.81002 1.00394 1.88982 1.28211 1.23422 1.87401 1.23426 0.82506 0.95434 0.95430 1.22525 0.97558 0.83826 0.93860 1.46240 1.79575 1.04156 1.06777 1.19418 1.39120 0.87237 0.90344 0.89810 1.25663 1.03124 1.00575 0.96877 1.70026 1.57675 1.26908 1.05748 0.85061 0.77240 0.79144 0.77932 1.21142 1.22359 1.19116 1.22738 0.98648 0.90159 0.87644 1.22974 0.97538 0.91634 1.04552 0.91769 0.93222 0.92093 0.90018 0.93110 0.91644 0.92603 0.92588 0.91792 0.91265 0.91933 0.93147 0.89188 0.88993 0.74326 0.92962 0.88797 0.94595 0.95228 0.94372 0.92476 0.90293 0.86389 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.95 71.98 0.64 -0.69 16 2 C -0.09 -0.85 2.92 -10.79 -0.03 -0.88 16 3 C -0.15 -1.38 9.19 71.98 0.66 -0.72 16 4 C -0.11 -1.57 5.05 30.59 0.15 -1.41 16 5 C 0.05 0.73 5.50 71.98 0.40 1.13 16 6 O -0.39 -8.31 9.53 -129.99 -1.24 -9.55 16 7 C 0.08 1.21 3.13 29.85 0.09 1.31 16 8 H 0.12 1.09 7.79 -2.39 -0.02 1.07 16 9 C -0.17 -2.05 9.48 71.98 0.68 -1.37 16 10 C 0.51 12.03 7.18 87.66 0.63 12.66 16 11 O -0.57 -19.67 16.16 15.94 0.26 -19.41 16 12 N -0.70 -13.61 5.04 -437.23 -2.21 -15.81 16 13 C 0.13 3.20 3.49 46.11 0.16 3.36 16 14 H 0.10 2.69 7.55 -2.39 -0.02 2.67 16 15 C 0.04 1.14 7.37 72.51 0.53 1.67 16 16 O -0.36 -13.99 11.44 -148.98 -1.70 -15.69 16 17 C 0.07 2.65 1.28 -10.65 -0.01 2.64 16 18 C 0.15 7.13 6.91 86.09 0.59 7.73 16 19 N -0.64 -33.57 3.70 -740.91 -2.74 -36.32 16 20 C -0.23 -13.46 10.69 84.03 0.90 -12.56 16 21 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 23 N -0.95 -59.58 11.52 21.65 0.25 -59.33 16 24 Si 0.98 46.96 29.56 68.60 2.03 48.99 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.13 5.11 8.47 86.09 0.73 5.84 16 29 C -0.13 -3.13 6.24 31.35 0.20 -2.94 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.47 6.57 -2.39 -0.02 0.46 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 39 H 0.07 0.64 7.87 -2.39 -0.02 0.62 16 40 H 0.06 0.69 6.51 -2.39 -0.02 0.67 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.75 7.87 -2.39 -0.02 0.73 16 43 H 0.09 0.81 7.92 -2.39 -0.02 0.79 16 44 H 0.42 5.28 8.17 -92.71 -0.76 4.52 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.09 2.85 8.06 -2.39 -0.02 2.84 16 47 H 0.04 1.72 7.96 -2.39 -0.02 1.70 16 48 H 0.03 1.66 7.39 -2.39 -0.02 1.64 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 52 H 0.12 2.04 7.69 -2.39 -0.02 2.02 16 53 H 0.10 2.35 7.84 -2.38 -0.02 2.33 16 Total: -1.00 -81.06 422.66 1.56 -79.50 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.12 Total: 15.47 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.80 Total: 12.14 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.70 Total: -111.47 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -2.68 Total: -44.65 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.06 1.56 -79.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570249506.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.518 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds