Wall clock time and date at job start Sat Apr 11 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47040 * 2 1 4 4 C 1.34779 * 120.00333 * 84.75138 * 3 2 1 5 5 O 1.21281 * 119.99423 * 4.40919 * 4 3 2 6 6 C 1.50700 * 120.00164 * 184.41653 * 4 3 2 7 7 H 1.08996 * 109.47004 * 312.15001 * 6 4 3 8 8 C 1.53000 * 109.47317 * 72.15006 * 6 4 3 9 9 N 1.46498 * 109.46894 * 192.14739 * 6 4 3 10 10 C 1.36934 * 120.00255 * 300.00147 * 9 6 4 11 11 H 1.07995 * 120.00273 * 10.30381 * 10 9 6 12 12 C 1.38812 * 120.00018 * 190.30796 * 10 9 6 13 13 N 1.31618 * 120.00128 * 28.11976 * 12 10 9 14 14 Si 1.86793 * 120.00138 * 208.12332 * 12 10 9 15 15 H 1.48498 * 109.47505 * 94.98898 * 14 12 10 16 16 H 1.48498 * 109.47396 * 214.98929 * 14 12 10 17 17 H 1.48502 * 109.47062 * 334.98874 * 14 12 10 18 18 C 1.46502 * 119.99590 * 119.99768 * 9 6 4 19 19 C 1.53004 * 109.46823 * 84.88074 * 18 9 6 20 20 C 1.50706 * 109.46769 * 179.97438 * 19 18 9 21 21 O 1.20824 * 120.00152 * 0.02562 * 20 19 18 22 22 O 1.34228 * 119.99909 * 179.97438 * 20 19 18 23 23 C 1.46504 * 119.99875 * 264.75090 * 3 2 1 24 24 C 1.53001 * 109.47240 * 53.18266 * 23 3 2 25 25 C 1.52997 * 109.47235 * 179.97438 * 24 23 3 26 26 C 1.53006 * 109.46994 * 59.99793 * 25 24 23 27 27 C 1.53001 * 109.47298 * 300.00168 * 26 25 24 28 28 C 1.52997 * 109.46871 * 293.18076 * 23 3 2 29 29 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47408 * 300.00439 * 1 2 3 31 31 H 1.08998 * 109.47362 * 59.99680 * 1 2 3 32 32 H 1.08997 * 109.47105 * 119.99585 * 2 1 3 33 33 H 1.08991 * 109.46971 * 240.00246 * 2 1 3 34 34 H 1.09006 * 109.46970 * 302.11428 * 8 6 4 35 35 H 1.09000 * 109.47249 * 62.11446 * 8 6 4 36 36 H 1.08998 * 109.46929 * 182.11772 * 8 6 4 37 37 H 0.97002 * 120.00415 * 180.02562 * 13 12 10 38 38 H 1.09006 * 109.47228 * 204.87369 * 18 9 6 39 39 H 1.08996 * 109.47480 * 324.88182 * 18 9 6 40 40 H 1.08997 * 109.47139 * 299.99345 * 19 18 9 41 41 H 1.09000 * 109.47465 * 60.00010 * 19 18 9 42 42 H 0.96695 * 117.00120 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.47232 * 173.18204 * 23 3 2 44 44 H 1.09000 * 109.46957 * 300.00106 * 24 23 3 45 45 H 1.08999 * 109.46797 * 59.99971 * 24 23 3 46 46 H 1.09000 * 109.47241 * 299.99940 * 25 24 23 47 47 H 1.09001 * 109.47369 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.46825 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.46864 * 60.00540 * 26 25 24 50 50 H 1.09001 * 109.46826 * 300.00402 * 27 26 25 51 51 H 1.08999 * 109.46797 * 180.02562 * 27 26 25 52 52 H 1.08993 * 109.47721 * 299.99818 * 28 23 3 53 53 H 1.09000 * 109.46946 * 60.00576 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1423 2.0522 1.1623 5 8 1.9264 1.4882 2.2140 6 6 2.5490 3.5033 1.1550 7 1 3.4138 3.6349 0.5048 8 6 1.3882 4.3557 0.6384 9 7 2.8933 3.9208 2.5164 10 6 1.9576 3.8444 3.5132 11 1 1.0259 3.3262 3.3408 12 6 2.2065 4.4332 4.7454 13 7 2.9996 5.4805 4.8261 14 14 1.4161 3.7392 6.2890 15 1 2.3572 2.7973 6.9465 16 1 1.0937 4.8487 7.2218 17 1 0.1688 3.0197 5.9258 18 6 4.2387 4.4198 2.8112 19 6 4.3103 5.9139 2.4893 20 6 5.6942 6.4274 2.7933 21 8 6.5368 5.6755 3.2227 22 8 5.9910 7.7199 2.5859 23 6 2.3719 2.0331 -1.2635 24 6 1.1986 1.9244 -2.2394 25 6 1.5676 2.6058 -3.5586 26 6 2.7965 1.9208 -4.1601 27 6 3.9698 2.0295 -3.1842 28 6 3.6005 1.3476 -1.8646 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.1073 4.0203 -0.3600 35 1 0.5354 4.2533 1.3095 36 1 1.6950 5.4008 0.5976 37 1 3.1739 5.8918 5.6872 38 1 4.4605 4.2647 3.8671 39 1 4.9669 3.8821 2.2041 40 1 4.0886 6.0691 1.4335 41 1 3.5822 6.4517 3.0965 42 1 6.8917 8.0026 2.7951 43 1 2.5956 3.0840 -1.0799 44 1 0.9749 0.8735 -2.4229 45 1 0.3233 2.4128 -1.8110 46 1 1.7910 3.6566 -3.3747 47 1 0.7319 2.5279 -4.2540 48 1 3.0590 2.4059 -5.1001 49 1 2.5730 0.8699 -4.3440 50 1 4.1931 3.0804 -3.0002 51 1 4.8453 1.5419 -3.6129 52 1 4.4364 1.4251 -1.1695 53 1 3.3768 0.2968 -2.0482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605394246.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:39 Heat of formation + Delta-G solvation = -132.004027 kcal Electronic energy + Delta-G solvation = -32672.455375 eV Core-core repulsion = 28543.768993 eV Total energy + Delta-G solvation = -4128.686383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.41053 -40.96818 -39.16247 -37.77814 -36.85408 -35.93040 -34.15309 -32.76817 -32.00075 -31.50120 -30.29367 -29.67156 -26.73568 -25.51736 -24.52532 -23.59415 -23.33674 -22.45724 -21.58327 -20.60712 -19.91195 -19.11111 -18.60432 -17.58048 -17.38330 -16.98778 -16.84507 -16.43426 -16.06032 -15.86569 -15.50687 -15.17534 -14.99782 -14.87530 -14.85772 -14.40994 -14.12130 -13.86819 -13.76200 -13.65735 -13.29894 -13.23726 -13.17659 -13.05111 -12.89859 -12.84769 -12.76493 -12.65779 -12.38991 -12.35110 -12.09099 -12.00659 -11.90024 -11.81264 -11.74526 -11.42671 -11.33641 -11.26241 -11.16921 -11.05789 -10.43113 -10.34342 -9.45699 -8.90648 -7.85985 -5.08051 1.41465 1.46957 1.49079 1.55118 1.91365 2.10749 2.43631 2.58409 3.29099 3.57183 3.74495 3.78622 3.92423 4.15519 4.23304 4.25954 4.28724 4.36239 4.38131 4.43163 4.51360 4.52192 4.56305 4.65514 4.67329 4.71216 4.76296 4.82376 4.83405 4.87349 4.98852 5.01194 5.02686 5.14161 5.20781 5.24198 5.30500 5.32787 5.35561 5.45584 5.46843 5.53570 5.59066 5.61853 5.64339 5.78762 5.85058 5.97695 6.29057 6.61487 7.19853 7.23688 7.51288 7.87477 8.23981 9.18587 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.004372 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.560415 B = 6402.405604 C = 8355.627829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.610 5.610 4 C 0.490 3.510 5 O -0.565 6.565 6 C 0.153 3.847 7 H 0.098 0.902 8 C -0.139 4.139 9 N -0.583 5.583 10 C -0.206 4.206 11 H 0.058 0.942 12 C -0.044 4.044 13 N -0.912 5.912 14 Si 0.932 3.068 15 H -0.305 1.305 16 H -0.292 1.292 17 H -0.285 1.285 18 C 0.197 3.803 19 C -0.113 4.113 20 C 0.494 3.506 21 O -0.564 6.564 22 O -0.516 6.516 23 C 0.130 3.870 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.127 4.127 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.047 0.953 39 H 0.024 0.976 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.418 0.582 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.070 0.930 52 H 0.048 0.952 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -3.195 -22.593 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.344 5.344 4 C 0.278 3.722 5 O -0.442 6.442 6 C 0.042 3.958 7 H 0.116 0.884 8 C -0.198 4.198 9 N -0.302 5.302 10 C -0.336 4.336 11 H 0.076 0.924 12 C -0.238 4.238 13 N -0.561 5.561 14 Si 0.764 3.236 15 H -0.234 1.234 16 H -0.219 1.219 17 H -0.211 1.211 18 C 0.071 3.929 19 C -0.153 4.153 20 C 0.340 3.660 21 O -0.456 6.456 22 O -0.328 6.328 23 C 0.028 3.972 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.152 4.152 28 C -0.165 4.165 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.278 0.722 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.067 0.933 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.450 -3.743 -21.845 22.168 hybrid contribution 0.282 -0.344 1.986 2.035 sum -0.168 -4.087 -19.859 20.276 Atomic orbital electron populations 1.22148 0.95626 1.02554 1.01501 1.21318 0.94648 0.82904 1.02231 1.48352 1.65738 1.13892 1.06384 1.22379 0.76135 0.90662 0.83066 1.90666 1.50496 1.70273 1.32741 1.20513 0.98751 0.89506 0.87051 0.88429 1.22070 0.97374 1.00162 1.00178 1.44029 1.09189 1.72475 1.04520 1.19053 0.98494 1.24835 0.91176 0.92380 1.24960 1.01466 0.97749 0.99649 1.70004 1.43323 1.19602 1.23148 0.85753 0.77664 0.77761 0.82388 1.23404 1.21892 1.21114 1.20228 0.83329 0.90085 0.99291 1.22177 0.90108 0.99893 1.03083 1.24025 0.90976 0.79192 0.71846 1.90616 1.51617 1.58789 1.44602 1.84556 1.39904 1.28108 1.80269 1.21505 0.95520 0.97709 0.82497 1.21939 0.96750 1.02140 0.95248 1.21520 0.98461 0.99838 0.95457 1.21542 0.94407 1.01192 0.98271 1.21508 0.98657 1.00989 0.94072 1.21913 0.96623 1.00565 0.97443 0.90443 0.95786 0.90648 0.93509 0.88033 0.90024 0.94581 0.91249 0.94459 0.93488 0.95811 0.88661 0.85454 0.72177 0.88836 0.90743 0.92029 0.91508 0.90614 0.90877 0.91660 0.91632 0.91098 0.93279 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.98 71.98 0.72 -3.06 16 2 C 0.11 2.84 5.26 86.38 0.45 3.30 16 3 N -0.61 -17.26 2.38 -797.84 -1.90 -19.16 16 4 C 0.49 19.28 6.83 87.66 0.60 19.88 16 5 O -0.56 -28.51 14.19 -3.03 -0.04 -28.56 16 6 C 0.15 5.76 2.30 44.25 0.10 5.86 16 7 H 0.10 3.18 6.75 -2.39 -0.02 3.16 16 8 C -0.14 -4.51 8.82 71.98 0.63 -3.88 16 9 N -0.58 -28.01 2.36 -682.20 -1.61 -29.61 16 10 C -0.21 -11.37 7.50 84.03 0.63 -10.74 16 11 H 0.06 3.43 6.87 -2.91 -0.02 3.41 16 12 C -0.04 -2.50 4.77 84.86 0.40 -2.09 16 13 N -0.91 -51.18 8.66 21.65 0.19 -50.99 16 14 Si 0.93 48.39 29.64 68.60 2.03 50.43 16 15 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 16 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 17 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 18 C 0.20 9.41 4.12 86.38 0.36 9.76 16 19 C -0.11 -4.69 5.65 29.85 0.17 -4.52 16 20 C 0.49 19.35 8.33 71.24 0.59 19.95 16 21 O -0.56 -25.40 16.74 21.97 0.37 -25.04 16 22 O -0.52 -15.62 13.42 -51.40 -0.69 -16.31 16 23 C 0.13 2.64 1.60 44.99 0.07 2.71 16 24 C -0.12 -1.88 3.88 30.59 0.12 -1.77 16 25 C -0.11 -1.32 5.92 30.60 0.18 -1.14 16 26 C -0.12 -1.23 5.92 30.60 0.18 -1.05 16 27 C -0.11 -1.50 5.93 30.61 0.18 -1.31 16 28 C -0.13 -2.23 5.29 30.61 0.16 -2.07 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.47 6.01 -2.39 -0.01 1.46 16 32 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 33 H 0.10 1.88 6.55 -2.39 -0.02 1.87 16 34 H 0.08 2.02 5.89 -2.38 -0.01 2.01 16 35 H 0.03 1.38 7.42 -2.39 -0.02 1.37 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.05 2.68 6.13 -2.38 -0.01 2.66 16 39 H 0.02 1.08 7.99 -2.39 -0.02 1.06 16 40 H 0.10 3.32 8.14 -2.39 -0.02 3.31 16 41 H 0.13 6.11 5.95 -2.39 -0.01 6.09 16 42 H 0.42 8.41 9.10 -74.06 -0.67 7.73 16 43 H 0.09 1.97 4.55 -2.39 -0.01 1.95 16 44 H 0.07 1.05 6.61 -2.39 -0.02 1.03 16 45 H 0.06 1.06 7.56 -2.39 -0.02 1.04 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 53 H 0.07 1.14 6.99 -2.39 -0.02 1.12 16 Total: -1.00 -73.97 400.57 4.14 -69.83 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.24 Total: 19.59 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 5.56 Total: 29.83 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.32 Total: -99.77 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -0.37 Total: -69.91 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.43 kcal Total: -73.97 4.14 -69.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605394246.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.174 kcal (2) G-P(sol) polarization free energy of solvation -73.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds