Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46880 * 2 1 4 4 C 1.34777 * 119.99977 * 84.35240 * 3 2 1 5 5 O 1.21284 * 119.99925 * 4.56415 * 4 3 2 6 6 C 1.50698 * 119.99862 * 184.56447 * 4 3 2 7 7 H 1.08991 * 109.47117 * 49.51930 * 6 4 3 8 8 C 1.53004 * 109.46957 * 289.51530 * 6 4 3 9 9 N 1.46506 * 109.47021 * 169.51773 * 6 4 3 10 10 C 1.36938 * 119.99643 * 59.99661 * 9 6 4 11 11 H 1.07998 * 120.00038 * 38.03908 * 10 9 6 12 12 C 1.38810 * 119.99760 * 218.29972 * 10 9 6 13 13 N 1.31624 * 120.00111 * 14.13608 * 12 10 9 14 14 Si 1.86804 * 120.00186 * 194.12911 * 12 10 9 15 15 H 1.48498 * 109.46903 * 90.00422 * 14 12 10 16 16 H 1.48495 * 109.47381 * 210.00478 * 14 12 10 17 17 H 1.48500 * 109.46825 * 330.00666 * 14 12 10 18 18 C 1.46501 * 119.99914 * 239.99967 * 9 6 4 19 19 C 1.52997 * 109.46951 * 275.68667 * 18 9 6 20 20 C 1.50694 * 109.46980 * 179.97438 * 19 18 9 21 21 O 1.20819 * 120.00277 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00065 * 179.97438 * 20 19 18 23 23 C 1.46503 * 119.99837 * 264.34352 * 3 2 1 24 24 C 1.53000 * 109.46719 * 66.23977 * 23 3 2 25 25 C 1.53004 * 109.46840 * 179.97438 * 24 23 3 26 26 C 1.53005 * 109.47013 * 59.99661 * 25 24 23 27 27 C 1.52997 * 109.47243 * 300.00271 * 26 25 24 28 28 C 1.52995 * 109.47253 * 306.23524 * 23 3 2 29 29 H 1.08998 * 109.47684 * 185.67594 * 1 2 3 30 30 H 1.09001 * 109.46968 * 305.67347 * 1 2 3 31 31 H 1.09002 * 109.47265 * 65.66900 * 1 2 3 32 32 H 1.09000 * 109.47057 * 239.99862 * 2 1 3 33 33 H 1.08996 * 109.46723 * 120.00203 * 2 1 3 34 34 H 1.08998 * 109.46704 * 176.88919 * 8 6 4 35 35 H 1.08995 * 109.47351 * 296.89296 * 8 6 4 36 36 H 1.08995 * 109.46654 * 56.89461 * 8 6 4 37 37 H 0.96995 * 119.99794 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.46817 * 35.68875 * 18 9 6 39 39 H 1.09000 * 109.46862 * 155.68983 * 18 9 6 40 40 H 1.08997 * 109.47465 * 300.00323 * 19 18 9 41 41 H 1.09000 * 109.47079 * 60.00449 * 19 18 9 42 42 H 0.96699 * 117.00192 * 179.97438 * 22 20 19 43 43 H 1.09002 * 109.46808 * 186.23382 * 23 3 2 44 44 H 1.09002 * 109.46995 * 299.99290 * 24 23 3 45 45 H 1.08993 * 109.47528 * 59.99756 * 24 23 3 46 46 H 1.09002 * 109.46861 * 300.00345 * 25 24 23 47 47 H 1.08992 * 109.47352 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46545 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46861 * 60.00106 * 26 25 24 50 50 H 1.08998 * 109.47057 * 299.99714 * 27 26 25 51 51 H 1.09003 * 109.47130 * 180.02562 * 27 26 25 52 52 H 1.08994 * 109.47691 * 300.00251 * 28 23 3 53 53 H 1.09002 * 109.47330 * 60.00177 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1346 2.0549 1.1615 5 8 1.9146 1.4925 2.2133 6 6 2.5380 3.5068 1.1533 7 1 1.9201 4.0516 0.4397 8 6 4.0090 3.6252 0.7491 9 7 2.3525 4.0728 2.4919 10 6 3.0320 3.5465 3.5579 11 1 4.0525 3.2143 3.4371 12 6 2.4073 3.4351 4.7925 13 7 1.1009 3.5670 4.8834 14 14 3.4208 3.0976 6.3250 15 1 3.8425 4.3851 6.9330 16 1 2.6030 2.3337 7.3011 17 1 4.6226 2.3058 5.9592 18 6 1.4399 5.2017 2.6898 19 6 2.1721 6.5093 2.3820 20 6 1.2332 7.6704 2.5849 21 8 0.0954 7.4725 2.9398 22 8 1.6613 8.9248 2.3724 23 6 2.3803 2.0302 -1.2626 24 6 1.1269 2.2098 -2.1213 25 6 1.5048 2.8881 -3.4397 26 6 2.5163 2.0183 -4.1891 27 6 3.7696 1.8387 -3.3303 28 6 3.3915 1.1600 -2.0117 29 1 -0.3634 -1.0226 0.1016 30 1 -0.3633 0.5993 0.8348 31 1 -0.3634 0.4234 -0.9364 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.2858 4.6777 0.6894 35 1 4.6313 3.1273 1.4925 36 1 4.1575 3.1548 -0.2229 37 1 0.6644 3.4887 5.7460 38 1 0.5843 5.0984 2.0224 39 1 1.0950 5.2131 3.7237 40 1 3.0277 6.6125 3.0493 41 1 2.5170 6.4979 1.3480 42 1 1.0227 9.6367 2.5153 43 1 2.8222 3.0050 -1.0564 44 1 0.6850 1.2350 -2.3276 45 1 0.4065 2.8297 -1.5877 46 1 1.9466 3.8629 -3.2331 47 1 0.6120 3.0157 -4.0517 48 1 2.7858 2.5019 -5.1281 49 1 2.0746 1.0435 -4.3956 50 1 4.2114 2.8135 -3.1238 51 1 4.4904 1.2194 -3.8643 52 1 4.2844 1.0320 -1.3999 53 1 2.9496 0.1851 -2.2179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605394247.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -134.773131 kcal Electronic energy + Delta-G solvation = -32659.387487 eV Core-core repulsion = 28530.581027 eV Total energy + Delta-G solvation = -4128.806460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.32986 -41.06387 -39.05867 -37.63478 -36.92709 -35.82659 -34.05808 -33.15976 -31.85916 -31.57183 -30.12867 -29.62059 -26.84152 -25.52404 -24.51752 -23.52187 -23.27490 -22.44321 -21.55026 -20.54921 -19.93874 -19.10999 -18.49071 -17.46337 -17.42701 -17.16711 -16.91977 -16.55298 -16.00169 -15.70379 -15.47196 -15.20146 -15.04061 -14.84179 -14.60423 -14.40358 -14.37021 -13.95972 -13.82180 -13.53668 -13.40911 -13.13539 -13.01527 -13.00192 -12.92282 -12.85442 -12.74546 -12.58948 -12.48143 -12.44133 -12.22290 -12.01565 -11.81700 -11.77993 -11.61093 -11.51845 -11.46594 -11.23195 -11.12208 -11.05551 -10.45274 -10.19222 -9.36245 -8.50827 -7.72464 -5.34817 1.33982 1.43796 1.46422 1.53498 2.09481 2.17132 2.34328 2.57458 3.43618 3.64694 3.76135 3.85188 3.93884 4.17090 4.23542 4.26938 4.30158 4.33594 4.36443 4.41281 4.44946 4.50617 4.53030 4.59163 4.65762 4.72343 4.73405 4.79152 4.83743 4.88399 4.94984 4.99868 5.03348 5.15524 5.21016 5.25702 5.27357 5.30402 5.33254 5.36149 5.45441 5.47861 5.54582 5.65128 5.68368 5.76955 5.89084 5.95520 6.52510 6.74147 7.12048 7.25335 7.69686 7.91143 8.38435 9.27233 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.004393 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.451369 B = 6372.136497 C = 7997.780032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 N -0.616 5.616 4 C 0.482 3.518 5 O -0.548 6.548 6 C 0.146 3.854 7 H 0.086 0.914 8 C -0.146 4.146 9 N -0.569 5.569 10 C -0.224 4.224 11 H 0.057 0.943 12 C -0.034 4.034 13 N -0.918 5.918 14 Si 0.949 3.051 15 H -0.278 1.278 16 H -0.306 1.306 17 H -0.274 1.274 18 C 0.164 3.836 19 C -0.119 4.119 20 C 0.488 3.512 21 O -0.556 6.556 22 O -0.511 6.511 23 C 0.127 3.873 24 C -0.127 4.127 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.241 0.759 38 H 0.013 0.987 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.422 0.578 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.059 0.941 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 1.510 -21.766 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.010 4.010 3 N -0.352 5.352 4 C 0.269 3.731 5 O -0.422 6.422 6 C 0.036 3.964 7 H 0.103 0.897 8 C -0.205 4.205 9 N -0.288 5.288 10 C -0.355 4.355 11 H 0.075 0.925 12 C -0.230 4.230 13 N -0.562 5.562 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.233 1.233 17 H -0.199 1.199 18 C 0.037 3.963 19 C -0.159 4.159 20 C 0.332 3.668 21 O -0.447 6.447 22 O -0.324 6.324 23 C 0.024 3.976 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.150 4.150 28 C -0.162 4.162 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.283 0.717 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.077 0.923 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.844 0.821 -20.980 21.548 hybrid contribution -0.708 -0.099 1.781 1.919 sum 4.136 0.722 -19.200 19.653 Atomic orbital electron populations 1.22124 0.96412 1.01940 1.01133 1.21278 0.94059 0.83570 1.02122 1.48460 1.66355 1.13676 1.06683 1.22553 0.76468 0.91084 0.82990 1.90739 1.49071 1.69849 1.32565 1.20751 0.97780 0.88881 0.89032 0.89659 1.22198 0.94326 1.03193 1.00764 1.43828 1.50381 1.31736 1.02888 1.18885 0.93265 1.35257 0.88076 0.92500 1.25829 0.95408 1.00029 1.01743 1.70066 1.08755 1.54313 1.23096 0.85562 0.78284 0.77720 0.80591 1.20431 1.23295 1.19865 1.20558 0.89397 0.83822 1.02493 1.22023 0.98363 0.89961 1.05516 1.23880 0.87130 0.84378 0.71437 1.90706 1.22861 1.86290 1.44877 1.84531 1.49149 1.16988 1.81756 1.21597 0.95754 0.97751 0.82480 1.21976 0.96831 1.01370 0.96409 1.21509 0.99715 0.99146 0.94820 1.21541 0.95261 1.00144 0.98443 1.21505 0.97948 1.01228 0.94360 1.21884 0.98118 0.99314 0.96912 0.90744 0.96550 0.90903 0.87766 0.93792 0.90346 0.94322 0.89859 0.94934 0.96814 0.90911 0.87850 0.86372 0.71694 0.88111 0.91300 0.93607 0.91418 0.91188 0.90679 0.91858 0.91258 0.90634 0.92267 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.97 71.98 0.72 -3.85 16 2 C 0.11 3.31 5.52 86.38 0.48 3.79 16 3 N -0.62 -19.49 2.39 -797.82 -1.90 -21.39 16 4 C 0.48 20.72 6.90 87.66 0.60 21.32 16 5 O -0.55 -30.58 14.68 -3.04 -0.04 -30.62 16 6 C 0.15 5.70 2.32 44.24 0.10 5.81 16 7 H 0.09 2.97 7.29 -2.39 -0.02 2.96 16 8 C -0.15 -4.52 8.75 71.98 0.63 -3.89 16 9 N -0.57 -27.46 2.25 -682.21 -1.53 -28.99 16 10 C -0.22 -12.29 7.27 84.03 0.61 -11.68 16 11 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 12 C -0.03 -1.97 5.08 84.86 0.43 -1.54 16 13 N -0.92 -57.82 11.15 21.65 0.24 -57.58 16 14 Si 0.95 47.66 29.58 68.60 2.03 49.69 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 17 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 18 C 0.16 7.80 4.44 86.38 0.38 8.18 16 19 C -0.12 -4.24 6.13 29.85 0.18 -4.05 16 20 C 0.49 16.83 8.33 71.23 0.59 17.42 16 21 O -0.56 -23.88 16.74 21.98 0.37 -23.51 16 22 O -0.51 -12.74 13.42 -51.42 -0.69 -13.43 16 23 C 0.13 2.82 1.63 44.99 0.07 2.90 16 24 C -0.13 -2.49 4.70 30.60 0.14 -2.34 16 25 C -0.11 -1.60 5.92 30.60 0.18 -1.42 16 26 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 27 C -0.11 -1.40 5.92 30.61 0.18 -1.21 16 28 C -0.12 -2.14 4.96 30.61 0.15 -1.99 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.77 6.13 -2.39 -0.01 1.76 16 32 H 0.10 2.25 6.11 -2.39 -0.01 2.23 16 33 H 0.04 1.56 7.54 -2.39 -0.02 1.55 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.40 6.87 -2.39 -0.02 1.38 16 36 H 0.08 2.01 5.38 -2.39 -0.01 2.00 16 37 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.01 0.66 8.00 -2.39 -0.02 0.64 16 39 H 0.07 4.20 5.32 -2.39 -0.01 4.19 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.42 6.59 9.10 -74.06 -0.67 5.92 16 43 H 0.10 2.25 4.02 -2.39 -0.01 2.24 16 44 H 0.07 1.29 6.36 -2.39 -0.02 1.28 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.07 1.15 6.46 -2.39 -0.02 1.13 16 Total: -1.00 -81.09 404.79 4.35 -76.74 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.24 Total: 22.80 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 5.65 Total: 26.29 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.19 Total: -107.96 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -0.37 Total: -67.56 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.09 4.35 -76.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605394247.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.035 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds