Wall clock time and date at job start Sat Apr 11 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 119.99967 * 2 1 4 4 C 1.52997 * 109.47472 * 125.00110 * 3 2 1 5 5 O 1.42895 * 109.47193 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99739 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47692 * 330.00039 * 6 5 4 8 8 C 1.53000 * 109.47238 * 90.00304 * 6 5 4 9 9 C 1.50703 * 109.47113 * 210.00103 * 6 5 4 10 10 O 1.21277 * 120.00145 * 351.45642 * 9 6 5 11 11 N 1.34776 * 119.99873 * 171.46043 * 9 6 5 12 12 C 1.46923 * 120.63571 * 4.02209 * 11 9 6 13 13 C 1.52758 * 109.00992 * 233.58916 * 12 11 9 14 14 C 1.53046 * 109.38138 * 305.58137 * 13 12 11 15 15 N 1.46495 * 109.44882 * 181.25620 * 14 13 12 16 16 C 1.36945 * 119.99946 * 299.93933 * 15 14 13 17 17 H 1.08002 * 120.00193 * 319.32119 * 16 15 14 18 18 C 1.38808 * 119.99987 * 139.32043 * 16 15 14 19 19 N 1.31622 * 120.00125 * 340.93302 * 18 16 15 20 20 Si 1.86804 * 120.00083 * 160.93666 * 18 16 15 21 21 H 1.48502 * 109.46798 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00040 * 20 18 16 23 23 H 1.48496 * 109.46890 * 239.99896 * 20 18 16 24 24 C 1.46498 * 120.00416 * 119.94021 * 15 14 13 25 25 C 1.53001 * 109.46794 * 84.41174 * 24 15 14 26 26 O 1.42900 * 109.47225 * 65.00416 * 25 24 15 27 27 C 1.53041 * 109.53459 * 61.24126 * 14 13 12 28 28 C 1.46929 * 120.63039 * 184.30153 * 11 9 6 29 29 H 1.08004 * 120.00067 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00103 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00103 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47142 * 4.99450 * 3 2 1 33 33 H 1.09004 * 109.47011 * 245.00184 * 3 2 1 34 34 H 1.09004 * 109.47063 * 300.00042 * 4 3 2 35 35 H 1.09005 * 109.46863 * 59.99423 * 4 3 2 36 36 H 1.09002 * 109.47433 * 175.52108 * 8 6 5 37 37 H 1.09003 * 109.47310 * 295.52189 * 8 6 5 38 38 H 1.09008 * 109.47243 * 55.51855 * 8 6 5 39 39 H 1.09010 * 109.58142 * 353.42105 * 12 11 9 40 40 H 1.08996 * 109.59196 * 113.84249 * 12 11 9 41 41 H 1.09003 * 109.56346 * 185.55103 * 13 12 11 42 42 H 1.09001 * 109.36348 * 65.49429 * 13 12 11 43 43 H 1.08994 * 109.45741 * 301.22373 * 14 13 12 44 44 H 0.96992 * 120.00058 * 179.97438 * 19 18 16 45 45 H 1.08990 * 109.47280 * 204.41656 * 24 15 14 46 46 H 1.09003 * 109.46541 * 324.41774 * 24 15 14 47 47 H 1.08998 * 109.47066 * 185.00110 * 25 24 15 48 48 H 1.08998 * 109.47350 * 305.00164 * 25 24 15 49 49 H 0.96703 * 114.00288 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.49678 * 178.68093 * 27 14 13 51 51 H 1.08999 * 109.49726 * 58.58718 * 27 14 13 52 52 H 1.08997 * 109.58741 * 246.15990 * 28 11 9 53 53 H 1.09004 * 109.58247 * 6.44007 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7499 2.5705 1.1812 6 6 4.6886 2.6997 2.2508 7 1 4.3357 2.1355 3.1142 8 6 6.0470 2.1543 1.8059 9 6 4.8285 4.1531 2.6236 10 8 4.3110 5.0080 1.9363 11 7 5.5288 4.5030 3.7207 12 6 6.2347 3.4875 4.5137 13 6 5.7982 3.6037 5.9730 14 6 6.0144 5.0401 6.4549 15 7 5.6243 5.1460 7.8630 16 6 4.3393 4.8610 8.2408 17 1 3.5114 5.1873 7.6288 18 6 4.1007 4.1526 9.4105 19 7 5.0628 3.4387 9.9554 20 14 2.4140 4.2124 10.2111 21 1 1.5153 5.0797 9.4077 22 1 1.8490 2.8407 10.2783 23 1 2.5371 4.7649 11.5840 24 6 6.6089 5.5569 8.8670 25 6 6.6845 7.0844 8.9117 26 8 5.4367 7.6100 9.3687 27 6 5.1619 5.9951 5.6164 28 6 5.5958 5.9066 4.1499 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 2.4772 1.2357 2.1130 35 1 3.7399 0.5066 1.0920 36 1 6.7824 2.3249 2.5922 37 1 5.9636 1.0848 1.6124 38 1 6.3631 2.6645 0.8959 39 1 5.9883 2.4943 4.1380 40 1 7.3100 3.6508 4.4428 41 1 6.3877 2.9217 6.5857 42 1 4.7420 3.3473 6.0557 43 1 7.0666 5.3041 6.3487 44 1 4.8962 2.9440 10.7729 45 1 6.3102 5.1791 9.8447 46 1 7.5863 5.1523 8.6042 47 1 7.4785 7.3891 9.5935 48 1 6.8962 7.4671 7.9134 49 1 5.4124 8.5752 9.4224 50 1 5.2984 7.0152 5.9753 51 1 4.1117 5.7161 5.7025 52 1 6.6179 6.2713 4.0486 53 1 4.9298 6.5096 3.5326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691827010.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:06 Heat of formation + Delta-G solvation = -87.025040 kcal Electronic energy + Delta-G solvation = -31265.072618 eV Core-core repulsion = 27138.336671 eV Total energy + Delta-G solvation = -4126.735948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.25355 -38.30014 -37.30580 -36.13850 -35.28314 -34.64206 -32.58689 -31.57134 -30.44711 -30.20832 -29.09556 -27.70074 -25.41126 -24.21226 -23.27417 -22.80677 -22.55636 -20.71353 -20.15399 -19.86133 -18.87658 -17.40614 -16.68231 -16.59035 -16.19493 -16.15919 -15.61806 -15.11878 -14.85959 -14.66738 -14.47624 -14.20888 -13.82260 -13.70930 -13.67268 -13.25002 -13.14163 -12.99780 -12.93297 -12.46219 -12.37385 -12.10812 -11.95829 -11.80853 -11.71308 -11.43321 -11.34570 -11.19859 -11.12869 -10.94683 -10.74501 -10.69618 -10.49589 -10.05055 -9.96541 -9.87894 -9.83166 -9.64693 -9.49145 -9.28899 -9.10159 -8.39262 -8.35573 -6.47826 -5.73213 -3.30685 1.96084 2.75670 2.89402 3.41482 3.49873 3.54290 3.75320 4.49817 4.54672 4.69387 4.77749 4.84129 4.88847 5.04210 5.11055 5.14149 5.16270 5.22063 5.26331 5.38047 5.44319 5.48032 5.52862 5.57131 5.62287 5.69267 5.71606 5.80660 5.82343 5.90806 5.99312 6.02413 6.07581 6.14638 6.28537 6.34255 6.38855 6.45972 6.47499 6.61602 6.68062 6.78481 6.83889 7.01925 7.11015 7.18501 7.60622 7.61971 7.91374 8.36252 8.45388 8.64696 9.25466 9.87391 10.45250 11.29386 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.002940 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.223042 B = 9521.648618 C =10904.840033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.063 3.937 5 O -0.358 6.358 6 C 0.072 3.928 7 H 0.087 0.913 8 C -0.176 4.176 9 C 0.517 3.483 10 O -0.531 6.531 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.136 4.136 14 C 0.178 3.822 15 N -0.571 5.571 16 C -0.235 4.235 17 H 0.054 0.946 18 C 0.018 3.982 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.150 3.850 25 C 0.058 3.942 26 O -0.545 6.545 27 C -0.139 4.139 28 C 0.116 3.884 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.096 0.904 46 H 0.036 0.964 47 H 0.019 0.981 48 H 0.023 0.977 49 H 0.350 0.650 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.060 0.940 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -3.947 -14.491 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.129 4.129 4 C -0.014 4.014 5 O -0.277 6.277 6 C 0.011 3.989 7 H 0.105 0.895 8 C -0.234 4.234 9 C 0.304 3.696 10 O -0.407 6.407 11 N -0.337 5.337 12 C -0.023 4.023 13 C -0.176 4.176 14 C 0.071 3.929 15 N -0.290 5.290 16 C -0.365 4.365 17 H 0.072 0.928 18 C -0.181 4.181 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.216 1.216 24 C 0.023 3.977 25 C -0.022 4.022 26 O -0.346 6.346 27 C -0.179 4.179 28 C -0.006 4.006 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.041 0.959 49 H 0.193 0.807 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.079 0.921 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.518 -4.107 -14.817 15.581 hybrid contribution -0.593 0.324 0.859 1.093 sum 1.924 -3.783 -13.959 14.590 Atomic orbital electron populations 1.23919 0.95926 1.02092 1.00485 1.22800 0.96032 0.97966 1.00462 1.20631 0.97979 0.95937 0.98385 1.22539 0.93862 0.86301 0.98666 1.88004 1.54343 1.37365 1.47955 1.21873 0.91235 0.94481 0.91346 0.89483 1.22398 0.95824 1.01797 1.03384 1.20254 0.78434 0.90318 0.80606 1.90672 1.47279 1.51711 1.51061 1.48073 1.50592 1.09107 1.25907 1.22022 0.96166 0.90858 0.93246 1.22249 1.03164 1.00381 0.91779 1.20302 0.94857 0.91642 0.86139 1.43668 1.08532 1.76696 1.00124 1.18769 0.83153 1.27725 1.06821 0.92838 1.25128 0.96772 0.95754 1.00469 1.69990 1.32531 1.30200 1.20991 0.86369 0.84712 0.76883 0.79555 1.20247 1.22105 1.21605 1.20923 0.91156 0.87857 0.97763 1.23114 0.84492 0.99668 0.94955 1.86842 1.35528 1.22864 1.89375 1.22360 1.02256 1.00958 0.92312 1.21670 1.01230 0.81099 0.96637 0.88316 0.88356 0.87196 0.90452 0.90094 0.92908 0.93075 0.90153 0.91370 0.91121 0.90339 0.91591 0.90734 0.90969 0.93604 0.93915 0.88585 0.94554 0.96297 0.95917 0.80724 0.91502 0.91321 0.92123 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 14.32 29.02 0.42 -1.07 16 2 C -0.15 -1.28 9.52 -36.02 -0.34 -1.62 16 3 C -0.09 -0.89 6.03 -27.88 -0.17 -1.06 16 4 C 0.06 0.68 5.73 37.16 0.21 0.89 16 5 O -0.36 -5.08 9.54 -54.99 -0.52 -5.60 16 6 C 0.07 0.94 2.29 -27.88 -0.06 0.88 16 7 H 0.09 1.04 7.07 -51.93 -0.37 0.68 16 8 C -0.18 -1.78 9.07 37.16 0.34 -1.44 16 9 C 0.52 8.46 7.09 -10.98 -0.08 8.38 16 10 O -0.53 -10.68 15.95 -14.20 -0.23 -10.91 16 11 N -0.60 -9.13 2.98 -173.03 -0.52 -9.64 16 12 C 0.10 1.34 5.05 -3.94 -0.02 1.32 16 13 C -0.14 -2.38 5.29 -26.83 -0.14 -2.52 16 14 C 0.18 3.36 2.60 -67.89 -0.18 3.18 16 15 N -0.57 -13.09 2.30 -165.62 -0.38 -13.47 16 16 C -0.23 -6.14 7.98 -15.06 -0.12 -6.26 16 17 H 0.05 1.47 6.92 -52.49 -0.36 1.10 16 18 C 0.02 0.49 4.93 -17.43 -0.09 0.41 16 19 N -0.89 -24.95 11.64 55.49 0.65 -24.30 16 20 Si 0.89 22.04 29.59 -169.99 -5.03 17.01 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 C 0.15 3.32 5.55 -4.04 -0.02 3.30 16 25 C 0.06 1.10 7.39 37.16 0.27 1.37 16 26 O -0.54 -11.11 13.40 -35.23 -0.47 -11.58 16 27 C -0.14 -2.47 5.30 -26.61 -0.14 -2.61 16 28 C 0.12 1.80 6.42 -3.71 -0.02 1.78 16 29 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 30 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 31 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.05 0.45 7.98 -51.93 -0.41 0.04 16 36 H 0.08 0.73 5.55 -51.93 -0.29 0.44 16 37 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 39 H 0.08 0.89 4.62 -51.92 -0.24 0.65 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 43 H 0.05 0.80 7.87 -51.93 -0.41 0.40 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.10 2.50 5.76 -51.93 -0.30 2.20 16 46 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.35 5.17 9.12 45.56 0.42 5.59 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.07 1.41 7.08 -51.93 -0.37 1.04 16 52 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 53 H 0.08 1.39 7.03 -51.93 -0.36 1.02 16 LS Contribution 417.26 15.07 6.29 6.29 Total: -1.00 -32.77 417.26 -8.89 -41.66 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.53 Total: 5.64 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.14 Total: 4.91 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.25 Total: -47.41 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.22 Total: -28.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.77 -8.89 -41.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691827010.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.364 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds