Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 O 1.42902 * 109.47061 * 240.00165 * 2 1 3 5 5 C 1.42897 * 114.00008 * 90.00353 * 4 2 1 6 6 C 1.53002 * 109.47230 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.48768 * 305.03008 * 6 5 4 8 8 C 1.53091 * 109.48142 * 184.99974 * 6 5 4 9 9 C 1.53176 * 109.21206 * 182.43908 * 8 6 5 10 10 C 1.53174 * 109.03724 * 56.94941 * 9 8 6 11 11 C 1.53084 * 109.16456 * 303.01556 * 10 9 8 12 12 O 1.42906 * 109.41372 * 57.61236 * 11 10 9 13 13 C 1.50701 * 109.46830 * 120.00363 * 2 1 3 14 14 O 1.21284 * 119.99878 * 120.00246 * 13 2 1 15 15 N 1.34779 * 119.99850 * 299.99766 * 13 2 1 16 16 C 1.46504 * 119.99548 * 180.02562 * 15 13 2 17 17 C 1.53001 * 109.46536 * 180.02562 * 16 15 13 18 18 H 1.09001 * 112.84923 * 316.18715 * 17 16 15 19 19 C 1.53779 * 113.61648 * 87.49928 * 17 16 15 20 20 C 1.53788 * 87.08344 * 139.97539 * 19 17 16 21 21 H 1.08996 * 113.69500 * 220.00834 * 20 19 17 22 22 N 1.46502 * 113.60852 * 89.11412 * 20 19 17 23 23 C 1.36942 * 119.99969 * 107.50713 * 22 20 19 24 24 H 1.08000 * 119.99459 * 0.02562 * 23 22 20 25 25 C 1.38808 * 119.99759 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00446 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99750 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47240 * 89.99774 * 27 25 23 29 29 H 1.48497 * 109.47480 * 210.00420 * 27 25 23 30 30 H 1.48502 * 109.47281 * 330.00290 * 27 25 23 31 31 C 1.53784 * 87.07902 * 334.57061 * 20 19 17 32 32 H 1.08999 * 109.46870 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47064 * 300.00247 * 1 2 3 34 34 H 1.09001 * 109.46885 * 59.99589 * 1 2 3 35 35 H 1.09002 * 109.47363 * 59.99812 * 5 4 2 36 36 H 1.09005 * 109.47020 * 299.99637 * 5 4 2 37 37 H 1.09002 * 109.52401 * 62.50061 * 8 6 5 38 38 H 1.09004 * 109.52068 * 302.37706 * 8 6 5 39 39 H 1.09004 * 109.53956 * 176.81728 * 9 8 6 40 40 H 1.08995 * 109.54545 * 297.07504 * 9 8 6 41 41 H 1.09007 * 109.52410 * 62.92341 * 10 9 8 42 42 H 1.09000 * 109.52423 * 183.04692 * 10 9 8 43 43 H 1.09004 * 109.48326 * 177.59400 * 11 10 9 44 44 H 1.08997 * 109.48095 * 297.62758 * 11 10 9 45 45 H 0.96996 * 120.00181 * 0.02562 * 15 13 2 46 46 H 1.09003 * 109.46924 * 299.99261 * 16 15 13 47 47 H 1.09000 * 109.47621 * 59.99940 * 16 15 13 48 48 H 1.09000 * 113.61760 * 254.52726 * 19 17 16 49 49 H 1.09003 * 113.61523 * 25.43715 * 19 17 16 50 50 H 0.97005 * 119.99942 * 287.50117 * 22 20 19 51 51 H 0.97003 * 120.00287 * 179.97438 * 26 25 23 52 52 H 1.08998 * 113.61075 * 270.87937 * 31 20 19 53 53 H 1.08995 * 113.69379 * 139.98908 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2940 6 6 2.7092 -0.6405 -3.4789 7 1 3.6078 -1.1830 -3.1853 8 6 3.0353 0.2935 -4.6472 9 6 3.4861 -0.5417 -5.8495 10 6 2.3856 -1.5481 -6.1995 11 6 2.0857 -2.4120 -4.9718 12 8 1.7023 -1.5713 -3.8816 13 6 2.0323 -0.7105 1.2304 14 8 2.7296 -1.6966 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.1954 -0.9405 3.6507 17 6 1.6848 -0.2197 4.8999 18 1 1.7690 0.8646 4.8271 19 6 0.3014 -0.7020 5.3673 20 6 0.8364 -0.5939 6.8050 21 1 0.5158 -1.4087 7.4541 22 7 0.6360 0.7262 7.4079 23 6 -0.3050 0.8955 8.3883 24 1 -0.8990 0.0558 8.7173 25 6 -0.4944 2.1462 8.9598 26 7 0.2300 3.1695 8.5592 27 14 -1.7785 2.3773 10.2967 28 1 -1.1587 2.1388 11.6250 29 1 -2.3088 3.7632 10.2395 30 1 -2.8889 1.4135 10.0885 31 6 2.2417 -0.7939 6.2133 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 2.9321 0.9514 -2.0450 36 1 1.2538 0.6547 -2.5588 37 1 3.8349 0.9749 -4.3566 38 1 2.1474 0.8667 -4.9141 39 1 3.6655 0.1136 -6.7019 40 1 4.4027 -1.0759 -5.5994 41 1 1.4839 -1.0130 -6.4975 42 1 2.7202 -2.1831 -7.0199 43 1 1.2736 -3.1016 -5.2021 44 1 2.9766 -2.9776 -4.6989 45 1 1.1488 0.5384 2.5436 46 1 1.8323 -1.9683 3.6508 47 1 3.2854 -0.9402 3.6506 48 1 -0.5031 -0.0004 5.1468 49 1 0.0693 -1.7228 5.0635 50 1 1.1700 1.4804 7.1127 51 1 0.0973 4.0436 8.9584 52 1 2.5400 -1.8398 6.1408 53 1 3.0046 -0.1672 6.6751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691832139.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -134.077394 kcal Electronic energy + Delta-G solvation = -29345.779341 eV Core-core repulsion = 25217.003050 eV Total energy + Delta-G solvation = -4128.776291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16937 -40.44730 -39.93652 -38.45250 -36.01375 -35.01117 -34.56520 -33.55268 -32.30449 -31.67858 -28.64544 -28.00247 -26.42283 -25.87785 -25.27884 -24.68184 -23.17893 -22.99636 -21.53513 -21.13594 -19.81883 -19.33487 -18.38106 -18.08344 -17.54995 -16.96003 -16.92835 -16.66120 -16.30286 -16.06721 -15.79525 -15.63714 -15.48997 -15.27621 -15.06877 -14.71727 -14.63648 -14.38535 -13.87593 -13.66734 -13.59879 -13.49319 -13.33737 -13.27058 -12.93936 -12.89981 -12.77690 -12.62790 -12.48192 -12.18397 -12.14386 -12.05406 -11.98064 -11.61313 -11.52362 -11.46067 -11.28378 -11.04619 -10.91390 -10.80953 -10.48178 -10.39076 -10.08399 -8.98357 -7.94296 -5.22220 1.49336 1.50134 1.54763 1.58544 1.85312 2.56842 2.76184 2.84276 3.38493 3.61499 3.74008 3.80290 3.80683 3.89639 3.90879 3.92642 3.95869 4.03219 4.04633 4.16032 4.17042 4.28903 4.34167 4.40123 4.42076 4.47204 4.63703 4.64712 4.71177 4.73000 4.76417 4.81574 4.85401 4.91917 4.94479 5.00824 5.04647 5.10716 5.12636 5.15975 5.19283 5.28860 5.36232 5.36468 5.49152 5.55759 5.67459 6.06115 6.29454 6.30400 6.54470 7.20254 7.34826 8.11842 8.34527 9.28829 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.001558 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.147841 B =17971.632551 C =18349.509889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 H 0.117 0.883 4 O -0.382 6.382 5 C 0.062 3.938 6 C 0.089 3.911 7 H 0.051 0.949 8 C -0.143 4.143 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.052 3.948 12 O -0.397 6.397 13 C 0.509 3.491 14 O -0.576 6.576 15 N -0.711 5.711 16 C 0.140 3.860 17 C -0.100 4.100 18 H 0.086 0.914 19 C -0.153 4.153 20 C 0.143 3.857 21 H 0.058 0.942 22 N -0.718 5.718 23 C -0.243 4.243 24 H 0.076 0.924 25 C -0.073 4.073 26 N -0.968 5.968 27 Si 0.971 3.029 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.270 1.270 31 C -0.136 4.136 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.414 0.586 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.089 0.911 50 H 0.375 0.625 51 H 0.251 0.749 52 H 0.103 0.897 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -5.556 -30.651 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.135 0.865 4 O -0.301 6.301 5 C -0.015 4.015 6 C 0.031 3.969 7 H 0.069 0.931 8 C -0.180 4.180 9 C -0.161 4.161 10 C -0.191 4.191 11 C -0.025 4.025 12 O -0.317 6.317 13 C 0.295 3.705 14 O -0.455 6.455 15 N -0.365 5.365 16 C 0.017 3.983 17 C -0.119 4.119 18 H 0.104 0.896 19 C -0.193 4.193 20 C 0.033 3.967 21 H 0.077 0.923 22 N -0.357 5.357 23 C -0.375 4.375 24 H 0.094 0.906 25 C -0.265 4.265 26 N -0.618 5.618 27 Si 0.800 3.200 28 H -0.216 1.216 29 H -0.223 1.223 30 H -0.195 1.195 31 C -0.175 4.175 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.251 0.749 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.207 0.793 51 H 0.060 0.940 52 H 0.121 0.879 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.230 -6.510 -30.501 31.624 hybrid contribution -0.434 1.046 0.791 1.381 sum 4.797 -5.464 -29.710 30.587 Atomic orbital electron populations 1.22217 0.92079 1.03210 1.04730 1.22004 0.96111 0.96847 0.83890 0.86530 1.88068 1.86842 1.35537 1.19644 1.22858 1.01648 0.92453 0.84494 1.22167 0.90937 0.90646 0.93158 0.93064 1.22114 1.03092 0.98204 0.94635 1.21610 0.98168 0.98113 0.98165 1.22179 0.99843 0.98902 0.98128 1.22737 1.00959 0.92542 0.86220 1.87961 1.40974 1.50871 1.51892 1.20970 0.79686 0.84414 0.85400 1.90687 1.39470 1.27992 1.87309 1.45914 1.53361 1.32431 1.04761 1.21309 0.98645 0.95846 0.82527 1.22488 0.97082 0.99649 0.92644 0.89623 1.23706 0.95972 1.00814 0.98828 1.21387 0.95255 0.87503 0.92545 0.92336 1.42280 1.43639 1.06295 1.43464 1.19671 1.11797 0.94476 1.11539 0.90649 1.25507 1.02326 0.95773 1.02911 1.69801 1.44671 1.00363 1.46994 0.85176 0.79026 0.76623 0.79143 1.21584 1.22251 1.19525 1.23352 0.97204 1.01842 0.95098 0.92940 0.89205 0.89611 0.89608 0.91071 0.89102 0.90344 0.89692 0.91733 0.91100 0.89366 0.88304 0.93523 0.74947 0.91732 0.91936 0.93032 0.89271 0.79288 0.94042 0.87884 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.42 71.98 0.68 -2.00 16 2 C 0.07 1.44 3.14 29.85 0.09 1.53 16 3 H 0.12 1.55 7.79 -2.39 -0.02 1.53 16 4 O -0.38 -9.45 9.49 -125.61 -1.19 -10.64 16 5 C 0.06 1.02 5.41 71.98 0.39 1.41 16 6 C 0.09 1.53 2.93 30.63 0.09 1.62 16 7 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 8 C -0.14 -1.52 5.42 30.68 0.17 -1.35 16 9 C -0.12 -1.14 6.03 30.71 0.19 -0.96 16 10 C -0.15 -1.55 6.14 30.68 0.19 -1.36 16 11 C 0.05 0.78 6.84 72.01 0.49 1.27 16 12 O -0.40 -8.43 10.37 -144.49 -1.50 -9.93 16 13 C 0.51 13.58 7.23 87.66 0.63 14.21 16 14 O -0.58 -21.02 16.50 15.99 0.26 -20.75 16 15 N -0.71 -16.21 5.45 -463.04 -2.52 -18.73 16 16 C 0.14 3.55 5.51 86.38 0.48 4.03 16 17 C -0.10 -2.77 3.63 -10.27 -0.04 -2.81 16 18 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 19 C -0.15 -4.75 7.43 31.12 0.23 -4.52 16 20 C 0.14 5.38 4.57 45.52 0.21 5.59 16 21 H 0.06 2.22 8.10 -2.39 -0.02 2.21 16 22 N -0.72 -34.92 5.31 -320.43 -1.70 -36.62 16 23 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 24 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 25 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 26 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 27 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 31 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.16 7.56 -2.39 -0.02 1.14 16 34 H 0.09 1.12 7.87 -2.39 -0.02 1.10 16 35 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.07 0.99 7.87 -2.38 -0.02 0.97 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 39 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.41 7.50 7.89 -92.71 -0.73 6.77 16 46 H 0.06 1.71 7.84 -2.39 -0.02 1.69 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 50 H 0.37 19.43 7.90 -92.70 -0.73 18.70 16 51 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 52 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 53 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.95 424.63 0.41 -73.54 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.58 Total: 36.48 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.33 Total: -3.19 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.94 Total: -112.84 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -2.43 Total: -41.32 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.95 0.41 -73.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691832139.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.540 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds