Wall clock time and date at job start Sat Apr 11 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47145 * 2 1 4 4 O 1.42899 * 109.47161 * 120.00042 * 2 1 3 5 5 C 1.42902 * 114.00077 * 270.00033 * 4 2 1 6 6 C 1.52999 * 109.47233 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.48018 * 54.99765 * 6 5 4 8 8 C 1.53096 * 109.47995 * 175.01852 * 6 5 4 9 9 C 1.53178 * 109.16205 * 177.57615 * 8 6 5 10 10 C 1.53174 * 109.04960 * 303.04238 * 9 8 6 11 11 C 1.53099 * 109.16401 * 56.96942 * 10 9 8 12 12 O 1.42894 * 109.41492 * 302.39502 * 11 10 9 13 13 C 1.50697 * 109.46847 * 239.99756 * 2 1 3 14 14 O 1.21281 * 120.00364 * 244.99714 * 13 2 1 15 15 N 1.34783 * 120.00012 * 65.00494 * 13 2 1 16 16 C 1.46500 * 120.00119 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.47108 * 179.97438 * 16 15 13 18 18 H 1.09002 * 112.85043 * 314.66487 * 17 16 15 19 19 C 1.53785 * 113.69093 * 85.93603 * 17 16 15 20 20 C 1.53779 * 87.08093 * 139.99088 * 19 17 16 21 21 H 1.08999 * 113.68761 * 220.00455 * 20 19 17 22 22 N 1.46504 * 113.61484 * 89.11287 * 20 19 17 23 23 C 1.36936 * 119.99733 * 107.50045 * 22 20 19 24 24 H 1.08005 * 120.00401 * 0.02562 * 23 22 20 25 25 C 1.38808 * 119.99956 * 180.02562 * 23 22 20 26 26 N 1.31626 * 120.00031 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00167 * 0.02562 * 25 23 22 28 28 H 1.48508 * 109.47533 * 89.99633 * 27 25 23 29 29 H 1.48503 * 109.47564 * 209.99919 * 27 25 23 30 30 H 1.48503 * 109.47036 * 329.99855 * 27 25 23 31 31 C 1.53781 * 113.61293 * 183.47228 * 17 16 15 32 32 H 1.09002 * 109.46887 * 300.00117 * 1 2 3 33 33 H 1.08997 * 109.47069 * 59.99704 * 1 2 3 34 34 H 1.08998 * 109.47657 * 180.02562 * 1 2 3 35 35 H 1.09009 * 109.46916 * 299.99826 * 5 4 2 36 36 H 1.08994 * 109.47399 * 59.99701 * 5 4 2 37 37 H 1.08996 * 109.52457 * 297.49512 * 8 6 5 38 38 H 1.09004 * 109.51862 * 57.68598 * 8 6 5 39 39 H 1.08995 * 109.54388 * 183.16202 * 9 8 6 40 40 H 1.09008 * 109.60119 * 62.95019 * 9 8 6 41 41 H 1.09006 * 109.51898 * 297.06820 * 10 9 8 42 42 H 1.08994 * 109.52733 * 176.87884 * 10 9 8 43 43 H 1.09003 * 109.47658 * 182.40897 * 11 10 9 44 44 H 1.09001 * 109.47587 * 62.38089 * 11 10 9 45 45 H 0.96997 * 119.99419 * 359.97438 * 15 13 2 46 46 H 1.09005 * 109.46936 * 59.99437 * 16 15 13 47 47 H 1.09004 * 109.46937 * 300.00111 * 16 15 13 48 48 H 1.09003 * 113.60734 * 254.54208 * 19 17 16 49 49 H 1.08996 * 113.61146 * 25.43706 * 19 17 16 50 50 H 0.96996 * 119.99953 * 287.50554 * 22 20 19 51 51 H 0.96997 * 119.99554 * 180.02562 * 26 25 23 52 52 H 1.09005 * 113.61302 * 334.47929 * 31 17 16 53 53 H 1.08993 * 113.62030 * 105.38774 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7091 -0.6406 3.4788 7 1 3.6081 -1.1826 3.1853 8 6 3.0347 0.2933 4.6474 9 6 3.4857 -0.5430 5.8489 10 6 2.3857 -1.5500 6.1982 11 6 2.0854 -2.4127 4.9696 12 8 1.7015 -1.5710 3.8805 13 6 2.0322 -0.7105 -1.2304 14 8 2.6529 -1.7467 -1.1215 15 7 1.7918 -0.1942 -2.4520 16 6 2.2805 -0.8846 -3.6482 17 6 1.8752 -0.0948 -4.8942 18 1 0.8369 0.2357 -4.8667 19 6 2.8666 1.0194 -5.2692 20 6 2.6436 0.6161 -6.7363 21 1 3.5531 0.6278 -7.3368 22 7 1.5303 1.3215 -7.3762 23 6 1.7805 2.2906 -8.3106 24 1 2.7985 2.5347 -8.5763 25 6 0.7257 2.9593 -8.9165 26 7 0.9662 3.8906 -9.8151 27 14 -1.0349 2.5377 -8.4566 28 1 -1.4691 3.3935 -7.3232 29 1 -1.9219 2.7747 -9.6238 30 1 -1.1137 1.1096 -8.0570 31 6 2.2685 -0.7806 -6.2132 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 2.9320 0.9513 2.0450 36 1 1.2538 0.6547 2.5589 37 1 3.8342 0.9749 4.3571 38 1 2.1462 0.8654 4.9150 39 1 3.6654 0.1114 6.7018 40 1 4.4028 -1.0768 5.5992 41 1 1.4840 -1.0153 6.4970 42 1 2.7210 -2.1865 7.0170 43 1 1.2734 -3.1026 5.1996 44 1 2.9763 -2.9779 4.6958 45 1 1.2952 0.6344 -2.5391 46 1 1.8463 -1.8833 -3.6942 47 1 3.3669 -0.9624 -3.6043 48 1 2.5077 2.0210 -5.0323 49 1 3.8816 0.8378 -4.9158 50 1 0.6160 1.1020 -7.1378 51 1 0.2291 4.3581 -10.2382 52 1 3.1201 -1.4543 -6.1180 53 1 1.4270 -1.2321 -6.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691832141.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:16 Heat of formation + Delta-G solvation = -131.425445 kcal Electronic energy + Delta-G solvation = -29432.038393 eV Core-core repulsion = 25303.377100 eV Total energy + Delta-G solvation = -4128.661294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.18029 -40.46686 -40.00610 -38.46336 -36.07392 -35.02156 -34.57173 -33.56933 -32.69023 -31.88934 -28.81540 -28.00831 -26.44935 -25.76135 -25.18356 -24.60533 -23.18784 -23.02698 -21.54769 -21.14675 -20.12874 -19.55092 -18.40853 -18.10057 -17.55424 -16.96012 -16.86350 -16.70403 -16.45568 -16.06324 -15.81362 -15.69816 -15.45407 -15.22015 -14.97931 -14.84912 -14.61944 -14.57298 -14.04457 -13.71504 -13.62139 -13.54226 -13.37479 -13.29851 -13.08282 -13.00348 -12.79423 -12.64633 -12.49059 -12.23634 -12.19067 -11.98935 -11.88464 -11.64678 -11.60542 -11.48948 -11.29117 -11.06060 -10.93392 -10.85940 -10.48685 -10.39605 -10.09102 -9.28459 -8.01541 -5.35228 1.38760 1.42471 1.49967 1.55471 1.83507 2.49283 2.75926 2.83898 3.28998 3.52341 3.61416 3.74828 3.79564 3.86624 3.90148 3.91643 3.95095 4.01931 4.03755 4.04174 4.15890 4.28272 4.28681 4.38299 4.39614 4.46735 4.63123 4.63930 4.69611 4.71970 4.75110 4.81264 4.84797 4.91353 4.94197 4.98373 5.04103 5.09329 5.10215 5.15517 5.18135 5.26795 5.33391 5.35741 5.48778 5.55481 5.82017 6.05465 6.23643 6.29608 6.54700 7.09109 7.20728 7.85857 8.04738 9.19894 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.001660 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.306108 B =16866.503129 C =17179.871662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.117 0.883 4 O -0.383 6.383 5 C 0.062 3.938 6 C 0.088 3.912 7 H 0.051 0.949 8 C -0.143 4.143 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.052 3.948 12 O -0.397 6.397 13 C 0.509 3.491 14 O -0.575 6.575 15 N -0.712 5.712 16 C 0.139 3.861 17 C -0.103 4.103 18 H 0.094 0.906 19 C -0.153 4.153 20 C 0.145 3.855 21 H 0.056 0.944 22 N -0.733 5.733 23 C -0.233 4.233 24 H 0.056 0.944 25 C -0.064 4.064 26 N -0.984 5.984 27 Si 0.956 3.044 28 H -0.274 1.274 29 H -0.299 1.299 30 H -0.251 1.251 31 C -0.135 4.135 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.415 0.585 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.367 0.633 51 H 0.257 0.743 52 H 0.104 0.896 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -8.824 34.795 35.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.134 0.866 4 O -0.301 6.301 5 C -0.014 4.014 6 C 0.031 3.969 7 H 0.069 0.931 8 C -0.181 4.181 9 C -0.161 4.161 10 C -0.191 4.191 11 C -0.025 4.025 12 O -0.317 6.317 13 C 0.295 3.705 14 O -0.454 6.454 15 N -0.365 5.365 16 C 0.016 3.984 17 C -0.122 4.122 18 H 0.112 0.888 19 C -0.193 4.193 20 C 0.035 3.965 21 H 0.074 0.926 22 N -0.375 5.375 23 C -0.364 4.364 24 H 0.074 0.926 25 C -0.256 4.256 26 N -0.635 5.635 27 Si 0.783 3.217 28 H -0.200 1.200 29 H -0.226 1.226 30 H -0.176 1.176 31 C -0.174 4.174 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.201 0.799 51 H 0.066 0.934 52 H 0.122 0.878 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.687 -9.640 34.631 35.987 hybrid contribution -0.938 0.581 -0.345 1.156 sum 0.749 -9.059 34.285 35.470 Atomic orbital electron populations 1.22207 0.92020 1.03167 1.04797 1.22018 0.96189 0.96843 0.83908 0.86582 1.88073 1.86843 1.35552 1.19675 1.22855 1.01652 0.92438 0.84498 1.22170 0.90940 0.90645 0.93174 0.93059 1.22116 1.03088 0.98208 0.94640 1.21610 0.98172 0.98111 0.98196 1.22182 0.99839 0.98898 0.98138 1.22738 1.00956 0.92531 0.86239 1.87961 1.40915 1.50819 1.51961 1.20956 0.79022 0.85053 0.85425 1.90693 1.41975 1.25507 1.87244 1.45888 1.57486 1.28224 1.04900 1.21304 0.99111 0.95495 0.82510 1.22575 0.99957 0.96834 0.92845 0.88823 1.23692 0.99227 0.98137 0.98259 1.21345 0.90554 0.92250 0.92324 0.92565 1.42419 1.04005 1.43582 1.47460 1.19069 0.93528 1.10449 1.13357 0.92615 1.25516 1.02283 0.98707 0.99068 1.69893 1.32123 1.29139 1.32305 0.85399 0.79982 0.79110 0.77208 1.20043 1.22613 1.17558 1.23370 1.02253 0.96702 0.95108 0.89674 0.89000 0.93022 0.89597 0.91065 0.89101 0.90332 0.89736 0.91744 0.91087 0.89391 0.88296 0.93528 0.74848 0.91938 0.91696 0.92468 0.89198 0.79927 0.93384 0.87761 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 2 C 0.07 1.30 3.13 29.85 0.09 1.40 16 3 H 0.12 1.36 7.79 -2.39 -0.02 1.34 16 4 O -0.38 -9.00 9.49 -125.60 -1.19 -10.19 16 5 C 0.06 0.97 5.41 71.98 0.39 1.35 16 6 C 0.09 1.46 2.93 30.63 0.09 1.55 16 7 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 8 C -0.14 -1.44 5.42 30.69 0.17 -1.27 16 9 C -0.12 -1.09 6.03 30.71 0.19 -0.90 16 10 C -0.15 -1.48 6.14 30.69 0.19 -1.29 16 11 C 0.05 0.74 6.84 72.02 0.49 1.24 16 12 O -0.40 -8.13 10.37 -144.39 -1.50 -9.62 16 13 C 0.51 12.60 7.18 87.65 0.63 13.23 16 14 O -0.58 -20.11 16.51 15.96 0.26 -19.84 16 15 N -0.71 -14.31 5.52 -463.05 -2.55 -16.87 16 16 C 0.14 3.13 5.50 86.38 0.48 3.61 16 17 C -0.10 -2.47 3.63 -10.27 -0.04 -2.51 16 18 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 19 C -0.15 -4.31 7.43 31.12 0.23 -4.08 16 20 C 0.14 5.09 4.56 45.52 0.21 5.29 16 21 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 22 N -0.73 -32.44 5.11 -320.43 -1.64 -34.08 16 23 C -0.23 -12.96 10.45 84.03 0.88 -12.09 16 24 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 25 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 26 N -0.98 -62.29 13.97 21.65 0.30 -61.99 16 27 Si 0.96 44.01 27.74 68.60 1.90 45.91 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 31 C -0.14 -3.60 7.39 31.12 0.23 -3.37 16 32 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 33 H 0.09 0.95 7.92 -2.39 -0.02 0.94 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.94 8.09 -2.38 -0.02 0.92 16 36 H 0.07 0.92 7.87 -2.39 -0.02 0.91 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.41 6.16 8.25 -92.71 -0.77 5.40 16 46 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.06 1.55 7.88 -2.39 -0.02 1.53 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 50 H 0.37 15.40 5.76 -92.71 -0.53 14.87 16 51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 52 H 0.10 2.35 8.10 -2.38 -0.02 2.34 16 53 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -78.17 422.36 0.48 -77.69 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.47 Total: 31.80 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.37 Total: -2.79 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.89 Total: -112.94 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -2.43 Total: -39.66 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -78.17 0.48 -77.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691832141.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.736 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds