Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 O 1.42897 * 109.47399 * 239.99604 * 2 1 3 5 5 C 1.42900 * 113.99875 * 89.99700 * 4 2 1 6 6 C 1.53000 * 109.46925 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.82839 * 305.69903 * 6 5 4 8 8 C 1.54387 * 109.83062 * 184.81812 * 6 5 4 9 9 C 1.55454 * 102.18450 * 219.18540 * 8 6 5 10 10 C 1.54941 * 100.99398 * 34.03391 * 9 8 6 11 11 O 1.43243 * 109.83219 * 66.58911 * 6 5 4 12 12 C 1.50706 * 109.47058 * 119.99484 * 2 1 3 13 13 O 1.21283 * 119.99788 * 115.00444 * 12 2 1 14 14 N 1.34775 * 119.99836 * 295.00248 * 12 2 1 15 15 C 1.46931 * 120.60689 * 359.97438 * 14 12 2 16 16 C 1.53196 * 108.77131 * 233.57988 * 15 14 12 17 17 C 1.53039 * 109.33748 * 305.41286 * 16 15 14 18 18 C 1.53005 * 109.45951 * 181.36946 * 17 16 15 19 19 N 1.46494 * 109.46065 * 301.33071 * 17 16 15 20 20 C 1.36942 * 120.00052 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99739 * 0.02562 * 20 19 17 22 22 C 1.38807 * 120.00072 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00002 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47084 * 60.00288 * 24 22 20 26 26 H 1.48509 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47089 * 300.00053 * 24 22 20 28 28 C 1.53045 * 109.53694 * 61.35198 * 17 16 15 29 29 C 1.46928 * 120.62574 * 180.02562 * 14 12 2 30 30 H 1.08997 * 109.47217 * 60.00682 * 1 2 3 31 31 H 1.09008 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47361 * 300.00225 * 1 2 3 33 33 H 1.09004 * 109.47440 * 299.99904 * 5 4 2 34 34 H 1.09001 * 109.47051 * 60.00374 * 5 4 2 35 35 H 1.09001 * 110.84486 * 337.31561 * 8 6 5 36 36 H 1.08994 * 110.85094 * 100.93997 * 8 6 5 37 37 H 1.09002 * 111.05300 * 276.11725 * 9 8 6 38 38 H 1.08997 * 111.18473 * 152.00871 * 9 8 6 39 39 H 1.08997 * 110.31196 * 204.69598 * 10 9 8 40 40 H 1.09006 * 110.39326 * 82.56072 * 10 9 8 41 41 H 1.08996 * 109.56502 * 113.80682 * 15 14 12 42 42 H 1.09001 * 109.61713 * 353.38104 * 15 14 12 43 43 H 1.09002 * 109.49815 * 185.44599 * 16 15 14 44 44 H 1.09000 * 109.49595 * 65.37996 * 16 15 14 45 45 H 1.08993 * 109.46896 * 60.00258 * 18 17 16 46 46 H 1.09000 * 109.46705 * 180.02562 * 18 17 16 47 47 H 1.09000 * 109.47060 * 300.00226 * 18 17 16 48 48 H 0.96997 * 120.00152 * 0.02562 * 19 17 16 49 49 H 0.97007 * 120.00045 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.49877 * 58.58562 * 28 17 16 51 51 H 1.09003 * 109.49434 * 178.65059 * 28 17 16 52 52 H 1.08997 * 109.58597 * 6.59803 * 29 14 12 53 53 H 1.09001 * 109.69741 * 246.24622 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2940 6 6 2.7079 -0.6410 -3.4791 7 1 3.6000 -1.1958 -3.1884 8 6 3.0350 0.2928 -4.6642 9 6 2.5302 -0.5324 -5.8811 10 6 1.3055 -1.2521 -5.2625 11 8 1.6891 -1.5507 -3.9107 12 6 2.0323 -0.7103 1.2306 13 8 2.6530 -1.7466 1.1217 14 7 1.7918 -0.1940 2.4520 15 6 1.0418 1.0609 2.5993 16 6 1.8692 2.0332 3.4460 17 6 2.2401 1.3627 4.7707 18 6 3.0375 2.3435 5.6328 19 7 1.0185 0.9724 5.4789 20 6 1.1018 0.3500 6.6959 21 1 2.0681 0.1473 7.1337 22 6 -0.0556 -0.0194 7.3672 23 7 -1.2332 0.2282 6.8339 24 14 0.0580 -0.8677 9.0276 25 1 0.7630 0.0179 9.9887 26 1 -1.3091 -1.1562 9.5307 27 1 0.8104 -2.1398 8.8830 28 6 3.0889 0.1194 4.4950 29 6 2.2756 -0.8747 3.6609 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.2537 0.6545 -2.5589 34 1 2.9319 0.9512 -2.0450 35 1 2.4891 1.2324 -4.5798 36 1 4.1081 0.4710 -4.7330 37 1 3.2835 -1.2493 -6.2077 38 1 2.2299 0.1192 -6.7016 39 1 1.0922 -2.1718 -5.8071 40 1 0.4347 -0.5965 -5.2724 41 1 0.0916 0.8621 3.0950 42 1 0.8596 1.4958 1.6166 43 1 1.2844 2.9315 3.6441 44 1 2.7779 2.3021 2.9074 45 1 2.4327 3.2284 5.8302 46 1 3.3021 1.8658 6.5761 47 1 3.9462 2.6346 5.1058 48 1 0.1507 1.1541 5.0856 49 1 -2.0420 -0.0303 7.3029 50 1 3.9861 0.4059 3.9463 51 1 3.3728 -0.3441 5.4398 52 1 2.9071 -1.7168 3.3781 53 1 1.4279 -1.2335 4.2447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700287052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -131.645915 kcal Electronic energy + Delta-G solvation = -31345.417630 eV Core-core repulsion = 27216.746776 eV Total energy + Delta-G solvation = -4128.670854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56407 -40.51035 -39.47958 -38.27350 -36.13520 -34.26934 -33.35277 -33.00803 -31.82729 -31.03828 -30.64921 -29.08519 -26.65399 -25.89481 -25.47176 -24.20617 -23.43203 -22.57734 -22.14261 -21.00626 -19.62461 -18.99071 -18.49022 -18.04052 -17.63007 -16.93616 -16.77952 -16.62803 -16.28051 -15.87031 -15.64891 -15.54238 -15.41221 -15.03333 -14.75982 -14.60491 -14.39006 -14.18548 -14.01230 -13.72948 -13.39267 -13.28356 -13.17379 -13.00289 -12.83911 -12.66986 -12.63602 -12.61955 -12.49076 -12.35965 -12.22249 -12.16620 -12.08159 -12.05366 -11.74925 -11.69063 -11.44811 -11.17428 -10.86898 -10.81586 -10.47219 -10.44051 -9.62770 -8.87306 -7.86169 -5.10114 1.48202 1.49566 1.54167 1.54910 1.76259 2.60609 2.70445 2.98577 3.42001 3.48426 3.57285 3.76631 3.85736 3.89941 3.95899 3.96661 4.00367 4.08822 4.18557 4.22239 4.27581 4.29025 4.40090 4.45864 4.49302 4.58995 4.62860 4.65362 4.69679 4.75032 4.82095 4.84014 4.91065 4.94390 4.96272 5.01969 5.05073 5.05761 5.11686 5.16957 5.19795 5.27032 5.35650 5.37610 5.61846 5.63816 5.67878 6.03632 6.22282 6.37212 6.48331 7.14776 7.44977 8.21966 8.45078 9.36900 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.002293 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.932512 B =12208.598179 C =12533.302719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.120 0.880 4 O -0.383 6.383 5 C 0.044 3.956 6 C 0.074 3.926 7 H 0.069 0.931 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.035 3.965 11 O -0.404 6.404 12 C 0.506 3.494 13 O -0.582 6.582 14 N -0.593 5.593 15 C 0.104 3.896 16 C -0.124 4.124 17 C 0.187 3.813 18 C -0.143 4.143 19 N -0.721 5.721 20 C -0.211 4.211 21 H 0.071 0.929 22 C -0.075 4.075 23 N -0.966 5.966 24 Si 0.953 3.047 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.287 1.287 28 C -0.125 4.125 29 C 0.129 3.871 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.034 0.966 47 H 0.067 0.933 48 H 0.375 0.625 49 H 0.246 0.754 50 H 0.069 0.931 51 H 0.056 0.944 52 H 0.063 0.937 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 8.538 -25.667 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 H 0.138 0.862 4 O -0.302 6.302 5 C -0.032 4.032 6 C 0.016 3.984 7 H 0.087 0.913 8 C -0.177 4.177 9 C -0.187 4.187 10 C -0.041 4.041 11 O -0.325 6.325 12 C 0.294 3.706 13 O -0.462 6.462 14 N -0.326 5.326 15 C -0.018 4.018 16 C -0.162 4.162 17 C 0.097 3.903 18 C -0.202 4.202 19 N -0.361 5.361 20 C -0.343 4.343 21 H 0.089 0.911 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.785 3.215 25 H -0.208 1.208 26 H -0.228 1.228 27 H -0.214 1.214 28 C -0.165 4.165 29 C 0.007 3.993 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.208 0.792 49 H 0.055 0.945 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.082 0.918 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.002 7.569 -25.451 27.732 hybrid contribution -0.594 -0.737 1.466 1.745 sum 7.408 6.831 -23.985 26.016 Atomic orbital electron populations 1.22390 0.92429 1.03135 1.05029 1.21915 0.95845 0.96704 0.83700 0.86215 1.88090 1.86746 1.35707 1.19667 1.23311 1.01429 0.92968 0.85508 1.22892 0.90639 0.90989 0.93833 0.91292 1.23147 1.04036 0.98745 0.91739 1.23294 0.97286 0.99636 0.98450 1.23639 0.97797 1.00827 0.81839 1.88555 1.57368 1.56021 1.30515 1.21109 0.79114 0.85116 0.85231 1.90652 1.42916 1.25800 1.86836 1.48066 1.54584 1.25122 1.04868 1.22096 0.94652 0.82987 1.02060 1.22092 1.01423 0.98127 0.94601 1.19871 0.86920 0.92007 0.91521 1.22123 0.99540 0.98937 0.99633 1.42611 1.03292 1.70266 1.19976 1.19331 0.91961 1.27476 0.95575 0.91130 1.25282 0.95505 1.04209 1.01671 1.69757 0.96721 1.55135 1.40178 0.85502 0.75665 0.78709 0.81655 1.20797 1.22833 1.21364 1.22207 0.97978 0.97541 0.98748 1.21249 0.98144 0.95258 0.84690 0.88717 0.93625 0.89183 0.91224 0.89889 0.88455 0.88093 0.90274 0.87420 0.89499 0.91389 0.92088 0.86325 0.89253 0.88995 0.93368 0.94667 0.91376 0.79198 0.94544 0.91216 0.92489 0.91837 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.10 71.98 0.66 -3.09 16 2 C 0.08 1.96 2.30 29.85 0.07 2.03 16 3 H 0.12 2.01 7.07 -2.39 -0.02 1.99 16 4 O -0.38 -11.01 9.51 -126.48 -1.20 -12.21 16 5 C 0.04 0.81 5.28 71.98 0.38 1.19 16 6 C 0.07 1.39 3.81 31.07 0.12 1.51 16 7 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 8 C -0.14 -1.33 6.56 31.91 0.21 -1.12 16 9 C -0.15 -1.34 7.16 32.10 0.23 -1.11 16 10 C 0.03 0.50 7.78 72.65 0.57 1.07 16 11 O -0.40 -9.68 11.00 -146.65 -1.61 -11.29 16 12 C 0.51 17.31 7.12 87.66 0.62 17.94 16 13 O -0.58 -25.66 15.92 15.95 0.25 -25.41 16 14 N -0.59 -19.31 2.97 -818.96 -2.43 -21.74 16 15 C 0.10 2.73 4.70 86.36 0.41 3.13 16 16 C -0.12 -3.18 4.96 30.67 0.15 -3.03 16 17 C 0.19 6.37 0.74 3.63 0.00 6.37 16 18 C -0.14 -4.57 8.44 71.98 0.61 -3.96 16 19 N -0.72 -32.14 4.14 -303.22 -1.25 -33.39 16 20 C -0.21 -10.87 8.68 84.03 0.73 -10.14 16 21 H 0.07 3.58 6.70 -2.91 -0.02 3.56 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.97 -56.94 13.06 21.65 0.28 -56.65 16 24 Si 0.95 45.96 29.55 68.60 2.03 47.99 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 C -0.12 -4.33 4.70 30.66 0.14 -4.18 16 29 C 0.13 4.94 6.17 86.35 0.53 5.47 16 30 H 0.09 1.52 7.87 -2.39 -0.02 1.51 16 31 H 0.04 1.23 8.14 -2.38 -0.02 1.22 16 32 H 0.09 1.79 5.41 -2.39 -0.01 1.77 16 33 H 0.07 1.04 7.87 -2.39 -0.02 1.03 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.10 0.61 7.85 -2.39 -0.02 0.59 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 1.92 6.94 -2.39 -0.02 1.91 16 42 H 0.12 2.12 4.67 -2.39 -0.01 2.11 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.03 1.25 7.27 -2.39 -0.02 1.23 16 47 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.37 17.99 6.46 -92.71 -0.60 17.39 16 49 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.06 2.16 7.31 -2.39 -0.02 2.14 16 52 H 0.06 2.56 7.00 -2.39 -0.02 2.54 16 53 H 0.05 2.29 7.74 -2.39 -0.02 2.27 16 Total: -1.00 -75.54 404.74 2.24 -73.30 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.29 Total: 31.00 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.89 Total: 8.41 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.41 Total: -111.78 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -2.56 Total: -48.91 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.54 2.24 -73.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700287052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.349 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds