Wall clock time and date at job start Sat Apr 11 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 O 1.42906 * 109.47580 * 120.00100 * 2 1 3 5 5 C 1.42900 * 113.99878 * 270.00502 * 4 2 1 6 6 C 1.52998 * 109.47202 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47911 * 54.96722 * 6 5 4 8 8 C 1.53084 * 109.48368 * 174.99787 * 6 5 4 9 9 C 1.53174 * 109.16456 * 177.59004 * 8 6 5 10 10 C 1.53176 * 109.03724 * 303.01556 * 9 8 6 11 11 C 1.53091 * 109.21206 * 56.94941 * 10 9 8 12 12 O 1.42906 * 109.47551 * 294.93771 * 6 5 4 13 13 C 1.50704 * 109.47492 * 240.00096 * 2 1 3 14 14 O 1.21274 * 120.00103 * 245.00262 * 13 2 1 15 15 N 1.34777 * 119.99932 * 64.99586 * 13 2 1 16 16 C 1.46493 * 120.00052 * 180.02562 * 15 13 2 17 17 H 1.09000 * 112.85081 * 336.19843 * 16 15 13 18 18 C 1.53787 * 113.61488 * 107.50367 * 16 15 13 19 19 C 1.53782 * 87.08044 * 89.11731 * 18 16 15 20 20 H 1.09005 * 113.61361 * 270.88745 * 19 18 16 21 21 C 1.53003 * 113.69164 * 139.99466 * 19 18 16 22 22 N 1.46497 * 109.47100 * 87.46276 * 21 19 18 23 23 C 1.36938 * 120.00289 * 179.97438 * 22 21 19 24 24 H 1.08009 * 119.99198 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00403 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00134 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99966 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46829 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46772 * 119.99840 * 27 25 23 30 30 H 1.48490 * 109.47055 * 239.99862 * 27 25 23 31 31 C 1.53779 * 87.08300 * 25.43238 * 19 18 16 32 32 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47579 * 299.99826 * 1 2 3 34 34 H 1.08999 * 109.47713 * 59.99981 * 1 2 3 35 35 H 1.08995 * 109.47611 * 59.99080 * 5 4 2 36 36 H 1.09004 * 109.46887 * 299.99464 * 5 4 2 37 37 H 1.09007 * 109.52269 * 57.68131 * 8 6 5 38 38 H 1.09000 * 109.57238 * 297.52901 * 8 6 5 39 39 H 1.09004 * 109.54572 * 183.15149 * 9 8 6 40 40 H 1.08995 * 109.54814 * 62.88826 * 9 8 6 41 41 H 1.09002 * 109.52410 * 176.88783 * 10 9 8 42 42 H 1.09004 * 109.52533 * 297.01429 * 10 9 8 43 43 H 1.08998 * 109.48266 * 62.40567 * 11 10 9 44 44 H 1.08996 * 109.48151 * 182.44157 * 11 10 9 45 45 H 0.97001 * 119.99908 * 0.02562 * 15 13 2 46 46 H 1.08994 * 113.61707 * 203.66226 * 18 16 15 47 47 H 1.09002 * 113.61110 * 334.57125 * 18 16 15 48 48 H 1.08997 * 109.47008 * 207.46253 * 21 19 18 49 49 H 1.09000 * 109.46964 * 327.46284 * 21 19 18 50 50 H 0.97001 * 120.00175 * 0.02562 * 22 21 19 51 51 H 0.97001 * 120.00477 * 180.02562 * 26 25 23 52 52 H 1.08997 * 113.61736 * 220.02029 * 31 19 18 53 53 H 1.08998 * 113.69135 * 89.12693 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7079 -0.6408 3.4792 7 1 3.6064 -1.1837 3.1860 8 6 3.0340 0.2930 4.6476 9 6 3.4842 -0.5435 5.8492 10 6 2.3829 -1.5491 6.1987 11 6 2.0804 -2.4119 4.9709 12 8 1.6992 -1.5699 3.8809 13 6 2.0323 -0.7104 -1.2305 14 8 2.6529 -1.7466 -1.1215 15 7 1.7919 -0.1942 -2.4520 16 6 2.2798 -0.8850 -3.6482 17 1 3.1332 -1.5318 -3.4449 18 6 1.1676 -1.5671 -4.4623 19 6 1.0196 -0.2397 -5.2244 20 1 0.3120 0.4508 -4.7652 21 6 0.7884 -0.4156 -6.7266 22 7 -0.6460 -0.5621 -6.9861 23 6 -1.0960 -0.7328 -8.2681 24 1 -0.3934 -0.7590 -9.0879 25 6 -2.4551 -0.8710 -8.5140 26 7 -3.3113 -0.8386 -7.5149 27 14 -3.0689 -1.1031 -10.2630 28 1 -1.9142 -1.1047 -11.1967 29 1 -3.7905 -2.3970 -10.3667 30 1 -3.9899 0.0069 -10.6157 31 6 2.4852 0.0447 -4.8558 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.2538 0.6547 2.5589 36 1 2.9319 0.9513 2.0450 37 1 2.1460 0.8660 4.9148 38 1 3.8338 0.9746 4.3581 39 1 3.6644 0.1110 6.7021 40 1 4.4002 -1.0783 5.5986 41 1 2.7175 -2.1857 7.0178 42 1 1.4821 -1.0134 6.4983 43 1 2.9701 -2.9790 4.6969 44 1 1.2673 -3.1001 5.2015 45 1 1.2957 0.6348 -2.5391 46 1 1.5228 -2.3896 -5.0831 47 1 0.2915 -1.8304 -3.8696 48 1 1.1662 0.4583 -7.2571 49 1 1.3131 -1.3060 -7.0731 50 1 -1.2770 -0.5375 -6.2498 51 1 -4.2610 -0.9356 -7.6867 52 1 2.6728 1.0826 -4.5808 53 1 3.2017 -0.3365 -5.5834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717653427.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:31 Heat of formation + Delta-G solvation = -133.532897 kcal Electronic energy + Delta-G solvation = -29469.423311 eV Core-core repulsion = 25340.670631 eV Total energy + Delta-G solvation = -4128.752680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43694 -40.49859 -39.74832 -38.31678 -36.32756 -34.65521 -34.56283 -33.46038 -32.79127 -31.64797 -28.50353 -28.00176 -26.61926 -25.86008 -25.14461 -24.67792 -23.16470 -22.91406 -21.75228 -21.14146 -20.32390 -19.06264 -18.47493 -17.96402 -17.51443 -17.01656 -16.85844 -16.64094 -16.39133 -15.99469 -15.67252 -15.63562 -15.42393 -15.31711 -15.03711 -14.99860 -14.59854 -14.39658 -13.76518 -13.68997 -13.62785 -13.55746 -13.36825 -13.30867 -13.11664 -12.91824 -12.80118 -12.68145 -12.49517 -12.18106 -12.12079 -11.97884 -11.92553 -11.71877 -11.60295 -11.34920 -11.28167 -11.14624 -11.00072 -10.85846 -10.51709 -10.39421 -10.05975 -8.96675 -7.94585 -5.22575 1.47365 1.48279 1.51560 1.58339 1.79798 2.56594 2.76367 2.83467 3.38697 3.57962 3.59916 3.66055 3.80892 3.90613 3.91521 3.93444 3.94842 3.96962 4.04236 4.04853 4.16848 4.29293 4.34550 4.40206 4.47661 4.57485 4.63740 4.64374 4.70931 4.75605 4.80504 4.85537 4.85951 4.91032 4.92265 4.93695 5.00210 5.04995 5.10914 5.16166 5.16392 5.19166 5.28571 5.36536 5.37266 5.50283 5.67698 6.06864 6.28509 6.31079 6.54521 7.20615 7.34514 8.12818 8.35013 9.29212 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.001610 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.920046 B =17389.103696 C =17946.863851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.125 0.875 4 O -0.384 6.384 5 C 0.061 3.939 6 C 0.087 3.913 7 H 0.052 0.948 8 C -0.142 4.142 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.052 3.948 12 O -0.399 6.399 13 C 0.512 3.488 14 O -0.573 6.573 15 N -0.694 5.694 16 C 0.125 3.875 17 H 0.090 0.910 18 C -0.145 4.145 19 C -0.109 4.109 20 H 0.089 0.911 21 C 0.159 3.841 22 N -0.745 5.745 23 C -0.245 4.245 24 H 0.075 0.925 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.973 3.027 28 H -0.266 1.266 29 H -0.295 1.295 30 H -0.292 1.292 31 C -0.114 4.114 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.416 0.584 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.024 0.976 49 H 0.018 0.982 50 H 0.373 0.627 51 H 0.250 0.750 52 H 0.096 0.904 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.127 7.496 28.715 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.142 0.858 4 O -0.303 6.303 5 C -0.015 4.015 6 C 0.030 3.970 7 H 0.070 0.930 8 C -0.180 4.180 9 C -0.160 4.160 10 C -0.191 4.191 11 C -0.025 4.025 12 O -0.318 6.318 13 C 0.299 3.701 14 O -0.452 6.452 15 N -0.347 5.347 16 C 0.019 3.981 17 H 0.108 0.892 18 C -0.184 4.184 19 C -0.128 4.128 20 H 0.107 0.893 21 C 0.033 3.967 22 N -0.387 5.387 23 C -0.377 4.377 24 H 0.093 0.907 25 C -0.269 4.269 26 N -0.621 5.621 27 Si 0.802 3.198 28 H -0.190 1.190 29 H -0.222 1.222 30 H -0.219 1.219 31 C -0.152 4.152 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.254 0.746 46 H 0.101 0.899 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.036 0.964 50 H 0.205 0.795 51 H 0.059 0.941 52 H 0.114 0.886 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.488 6.536 28.531 33.595 hybrid contribution -1.113 -0.113 -0.754 1.349 sum 15.376 6.423 27.777 32.392 Atomic orbital electron populations 1.22222 0.92460 1.02933 1.04829 1.21986 0.95751 0.97072 0.83742 0.85785 1.88086 1.86766 1.35692 1.19722 1.22875 1.01729 0.92452 0.84401 1.22194 0.90902 0.90681 0.93270 0.93029 1.22109 1.03137 0.98166 0.94544 1.21610 0.98094 0.98082 0.98256 1.22179 0.99895 0.98936 0.98053 1.22733 1.00899 0.92550 0.86300 1.87968 1.41005 1.50962 1.51909 1.21021 0.78688 0.84995 0.85403 1.90692 1.41954 1.25334 1.87177 1.45514 1.57254 1.27766 1.04195 1.21766 0.96663 0.95465 0.84173 0.89150 1.23430 0.98796 0.97687 0.98460 1.22681 0.98115 0.97547 0.94423 0.89262 1.20835 0.84356 0.97283 0.94246 1.42584 1.03032 1.87776 1.05340 1.19711 0.91446 1.39921 0.86608 0.90707 1.25557 0.96313 1.03814 1.01217 1.69819 1.01512 1.59241 1.31510 0.85081 0.78088 0.76686 0.79969 1.19018 1.22243 1.21882 1.23213 0.95556 1.00771 0.95647 0.93639 0.89387 0.89181 0.91153 0.89150 0.90371 0.88860 0.89636 0.91707 0.89423 0.91134 0.93541 0.88504 0.74646 0.89909 0.93142 0.95853 0.96385 0.79526 0.94075 0.88573 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.08 1.45 3.13 29.85 0.09 1.54 16 3 H 0.12 1.35 7.79 -2.39 -0.02 1.33 16 4 O -0.38 -9.39 9.49 -125.61 -1.19 -10.58 16 5 C 0.06 0.97 5.41 71.98 0.39 1.36 16 6 C 0.09 1.48 2.93 30.62 0.09 1.57 16 7 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 8 C -0.14 -1.43 5.42 30.68 0.17 -1.27 16 9 C -0.12 -1.11 6.03 30.71 0.19 -0.93 16 10 C -0.15 -1.60 6.13 30.68 0.19 -1.41 16 11 C 0.05 0.81 6.85 72.01 0.49 1.30 16 12 O -0.40 -8.67 10.37 -144.41 -1.50 -10.17 16 13 C 0.51 13.40 7.18 87.66 0.63 14.03 16 14 O -0.57 -21.03 16.11 15.98 0.26 -20.78 16 15 N -0.69 -14.87 5.22 -440.04 -2.30 -17.17 16 16 C 0.13 3.08 4.32 45.52 0.20 3.27 16 17 H 0.09 2.46 7.46 -2.39 -0.02 2.45 16 18 C -0.14 -4.38 7.43 31.12 0.23 -4.15 16 19 C -0.11 -3.20 3.63 -10.27 -0.04 -3.24 16 20 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 21 C 0.16 6.18 6.10 86.38 0.53 6.71 16 22 N -0.74 -38.00 5.60 -343.45 -1.92 -39.93 16 23 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 25 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 26 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 27 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 31 C -0.11 -2.41 7.39 31.12 0.23 -2.18 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 34 H 0.09 1.25 7.93 -2.39 -0.02 1.23 16 35 H 0.07 0.95 7.87 -2.39 -0.02 0.93 16 36 H 0.09 0.91 8.09 -2.38 -0.02 0.90 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.42 6.38 8.48 -92.71 -0.79 5.59 16 46 H 0.08 2.61 7.90 -2.39 -0.02 2.59 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.02 0.72 7.85 -2.39 -0.02 0.70 16 50 H 0.37 20.24 7.67 -92.71 -0.71 19.53 16 51 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 52 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.11 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -79.22 424.78 0.41 -78.81 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.61 Total: 33.46 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.37 Total: -2.59 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -3.94 Total: -116.72 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -2.43 Total: -41.53 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -79.22 0.41 -78.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717653427.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.726 kcal (2) G-P(sol) polarization free energy of solvation -79.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds