Wall clock time and date at job start Sat Apr 11 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46753 * 2 1 4 4 O 1.42906 * 109.46647 * 240.00071 * 2 1 3 5 5 C 1.42900 * 113.99878 * 90.00439 * 4 2 1 6 6 C 1.52998 * 109.47202 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47911 * 54.96722 * 6 5 4 8 8 C 1.53084 * 109.48368 * 174.99787 * 6 5 4 9 9 C 1.53174 * 109.16456 * 177.59004 * 8 6 5 10 10 C 1.53176 * 109.03724 * 303.01556 * 9 8 6 11 11 C 1.53091 * 109.21206 * 56.94941 * 10 9 8 12 12 O 1.42906 * 109.47551 * 294.93771 * 6 5 4 13 13 C 1.50694 * 109.47057 * 120.00285 * 2 1 3 14 14 O 1.21284 * 120.00230 * 120.00084 * 13 2 1 15 15 N 1.34778 * 120.00288 * 299.99833 * 13 2 1 16 16 C 1.46494 * 120.00528 * 180.02562 * 15 13 2 17 17 H 1.09007 * 112.84689 * 334.66042 * 16 15 13 18 18 C 1.53779 * 113.61917 * 105.85819 * 16 15 13 19 19 C 1.54054 * 86.98181 * 89.16267 * 18 16 15 20 20 H 1.09000 * 113.61845 * 270.88521 * 19 18 16 21 21 C 1.53007 * 113.69421 * 139.99247 * 19 18 16 22 22 N 1.46498 * 109.47432 * 87.46508 * 21 19 18 23 23 C 1.36928 * 120.00333 * 180.02562 * 22 21 19 24 24 H 1.08008 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38809 * 120.00262 * 180.02562 * 23 22 21 26 26 N 1.31619 * 119.99878 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00085 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47337 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47442 * 120.00097 * 27 25 23 30 30 H 1.48507 * 109.46877 * 239.99863 * 27 25 23 31 31 C 1.53779 * 87.07850 * 25.43528 * 19 18 16 32 32 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47242 * 300.00008 * 1 2 3 34 34 H 1.08997 * 109.47525 * 60.00306 * 1 2 3 35 35 H 1.08995 * 109.47611 * 59.99080 * 5 4 2 36 36 H 1.09004 * 109.46887 * 299.99464 * 5 4 2 37 37 H 1.09007 * 109.52269 * 57.68131 * 8 6 5 38 38 H 1.09000 * 109.57238 * 297.52901 * 8 6 5 39 39 H 1.09004 * 109.54572 * 183.15149 * 9 8 6 40 40 H 1.08997 * 109.61789 * 62.93035 * 9 8 6 41 41 H 1.09002 * 109.52410 * 176.88783 * 10 9 8 42 42 H 1.09004 * 109.52533 * 297.01429 * 10 9 8 43 43 H 1.08998 * 109.48266 * 62.40567 * 11 10 9 44 44 H 1.08996 * 109.48151 * 182.44157 * 11 10 9 45 45 H 0.97004 * 119.99680 * 359.97438 * 15 13 2 46 46 H 1.09000 * 113.61602 * 203.66577 * 18 16 15 47 47 H 1.08997 * 113.61441 * 334.57113 * 18 16 15 48 48 H 1.09002 * 109.47138 * 207.46735 * 21 19 18 49 49 H 1.08999 * 109.46699 * 327.46349 * 21 19 18 50 50 H 0.97002 * 119.99278 * 359.97438 * 22 21 19 51 51 H 0.97000 * 119.99953 * 180.02562 * 26 25 23 52 52 H 1.09003 * 113.61296 * 220.02438 * 31 19 18 53 53 H 1.08997 * 113.69415 * 89.12706 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.2000 0.1829 -2.2941 6 6 2.7089 -0.6405 -3.4789 7 1 2.0211 -1.4639 -3.6714 8 6 2.7978 0.2513 -4.7200 9 6 3.3646 -0.5645 -5.8859 10 6 4.7275 -1.1345 -5.4810 11 6 4.5656 -1.9725 -4.2101 12 8 4.0042 -1.1623 -3.1752 13 6 2.0323 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7068 -0.2501 2.4545 16 6 2.1955 -0.9403 3.6507 17 1 2.4139 -1.9933 3.4721 18 6 3.3258 -0.1911 4.3758 19 6 2.2243 0.5292 5.1765 20 1 1.8686 1.4447 4.7038 21 6 2.5637 0.7181 6.6565 22 7 3.3105 1.9663 6.8309 23 6 3.7252 2.3474 8.0790 24 1 3.5014 1.7279 8.9349 25 6 4.4324 3.5303 8.2443 26 7 4.7038 4.2860 7.2014 27 14 4.9987 4.0498 9.9469 28 1 4.5698 3.0349 10.9423 29 1 6.4792 4.1645 9.9626 30 1 4.3969 5.3636 10.2893 31 6 1.3334 -0.6933 4.9000 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 2.9318 0.9513 -2.0451 36 1 1.2537 0.6547 -2.5589 37 1 3.4539 1.0973 -4.5144 38 1 1.8040 0.6159 -4.9796 39 1 3.4831 0.0791 -6.7577 40 1 2.6843 -1.3816 -6.1257 41 1 5.1132 -1.7620 -6.2844 42 1 5.4228 -0.3166 -5.2918 43 1 3.9027 -2.8140 -4.4115 44 1 5.5399 -2.3447 -3.8935 45 1 1.1494 0.5389 2.5436 46 1 3.9571 -0.8374 4.9856 47 1 3.8984 0.4704 3.7257 48 1 1.6427 0.7614 7.2378 49 1 3.1708 -0.1196 6.9997 50 1 3.5118 2.5224 6.0620 51 1 5.1983 5.1125 7.3168 52 1 0.2986 -0.4371 4.6727 53 1 1.4199 -1.4774 5.6521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717653429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:38 Heat of formation + Delta-G solvation = -133.533569 kcal Electronic energy + Delta-G solvation = -29543.618898 eV Core-core repulsion = 25414.866190 eV Total energy + Delta-G solvation = -4128.752709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42987 -40.50229 -39.73909 -38.31474 -36.33253 -34.67381 -34.57129 -33.45407 -32.79674 -31.61251 -28.49739 -28.01785 -26.62997 -25.83107 -25.13729 -24.70233 -23.16831 -22.91190 -21.76406 -21.12780 -20.33102 -19.06353 -18.44194 -17.96396 -17.55555 -17.08319 -16.89196 -16.65823 -16.20961 -16.10761 -15.75498 -15.53488 -15.42930 -15.25220 -15.15528 -14.97161 -14.56842 -14.42177 -13.75352 -13.65873 -13.60369 -13.48834 -13.37387 -13.28108 -13.11213 -13.01056 -12.90370 -12.70888 -12.33445 -12.18333 -12.12358 -11.99707 -11.92982 -11.72656 -11.60428 -11.35631 -11.25192 -11.15234 -11.04755 -10.86225 -10.49846 -10.40128 -10.05410 -8.97169 -7.95005 -5.23006 1.47082 1.47986 1.53800 1.58121 1.79899 2.56247 2.77015 2.83069 3.38132 3.58652 3.59845 3.63633 3.81321 3.90638 3.91268 3.92540 3.94684 3.95104 4.03096 4.11012 4.14896 4.28360 4.33919 4.38897 4.46122 4.56999 4.64119 4.66667 4.72697 4.75712 4.82164 4.84912 4.85275 4.90637 4.91579 4.93077 4.99747 5.04596 5.10030 5.15525 5.15973 5.21618 5.28006 5.36247 5.36997 5.49939 5.67498 6.05873 6.28148 6.32862 6.54770 7.21843 7.34013 8.12237 8.34529 9.28843 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.001744 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.464724 B =16050.547539 C =16858.189742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 H 0.109 0.891 4 O -0.382 6.382 5 C 0.061 3.939 6 C 0.087 3.913 7 H 0.062 0.938 8 C -0.143 4.143 9 C -0.121 4.121 10 C -0.154 4.154 11 C 0.052 3.948 12 O -0.404 6.404 13 C 0.510 3.490 14 O -0.573 6.573 15 N -0.694 5.694 16 C 0.125 3.875 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.108 4.108 20 H 0.089 0.911 21 C 0.159 3.841 22 N -0.745 5.745 23 C -0.245 4.245 24 H 0.075 0.925 25 C -0.078 4.078 26 N -0.970 5.970 27 Si 0.973 3.027 28 H -0.266 1.266 29 H -0.295 1.295 30 H -0.292 1.292 31 C -0.113 4.113 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.416 0.584 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.024 0.976 49 H 0.018 0.982 50 H 0.373 0.627 51 H 0.251 0.749 52 H 0.097 0.903 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -9.835 -28.082 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 H 0.126 0.874 4 O -0.301 6.301 5 C -0.015 4.015 6 C 0.030 3.970 7 H 0.080 0.920 8 C -0.181 4.181 9 C -0.158 4.158 10 C -0.192 4.192 11 C -0.024 4.024 12 O -0.324 6.324 13 C 0.297 3.703 14 O -0.451 6.451 15 N -0.348 5.348 16 C 0.019 3.981 17 H 0.106 0.894 18 C -0.184 4.184 19 C -0.127 4.127 20 H 0.107 0.893 21 C 0.033 3.967 22 N -0.387 5.387 23 C -0.376 4.376 24 H 0.093 0.907 25 C -0.270 4.270 26 N -0.621 5.621 27 Si 0.803 3.197 28 H -0.190 1.190 29 H -0.222 1.222 30 H -0.219 1.219 31 C -0.151 4.151 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.253 0.747 46 H 0.101 0.899 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.036 0.964 50 H 0.205 0.795 51 H 0.059 0.941 52 H 0.115 0.885 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.166 -10.751 -27.814 31.842 hybrid contribution 0.707 1.135 0.638 1.481 sum -10.459 -9.616 -27.176 30.666 Atomic orbital electron populations 1.22242 0.90849 1.03663 1.05282 1.22045 0.96805 0.96458 0.83784 0.87371 1.88058 1.86974 1.35276 1.19792 1.22873 1.00917 0.92511 0.85161 1.22229 0.84744 0.96237 0.93810 0.92007 1.22123 1.03571 0.98523 0.93876 1.21598 0.96165 1.00154 0.97926 1.22191 0.98527 1.00660 0.97833 1.22725 0.98899 0.92766 0.88037 1.88014 1.33165 1.68485 1.42746 1.21077 0.79439 0.84333 0.85473 1.90705 1.38974 1.28253 1.87194 1.45519 1.53147 1.32085 1.04026 1.21757 0.95461 0.96476 0.84376 0.89355 1.23478 0.96964 0.99329 0.98654 1.22726 0.97162 0.98226 0.94587 0.89271 1.20839 0.93714 0.87519 0.94667 1.42583 1.66276 1.23693 1.06177 1.19713 1.27233 1.03284 0.87419 0.90681 1.25575 1.02375 0.98119 1.00965 1.69823 1.46783 1.15285 1.30220 0.85068 0.77126 0.77780 0.79767 1.19016 1.22232 1.21872 1.23204 0.98947 0.97408 0.95552 0.92292 0.88796 0.89026 0.92682 0.88256 0.91090 0.88374 0.89719 0.91136 0.89249 0.91668 0.92952 0.89033 0.74660 0.89912 0.93235 0.95781 0.96380 0.79544 0.94066 0.88489 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.42 71.98 0.68 -1.27 16 2 C 0.07 1.36 3.14 29.85 0.09 1.46 16 3 H 0.11 1.63 7.79 -2.39 -0.02 1.61 16 4 O -0.38 -9.47 9.49 -125.58 -1.19 -10.66 16 5 C 0.06 1.05 5.41 71.98 0.39 1.44 16 6 C 0.09 1.54 2.93 30.62 0.09 1.63 16 7 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 8 C -0.14 -1.58 5.42 30.68 0.17 -1.42 16 9 C -0.12 -1.17 6.03 30.71 0.19 -0.98 16 10 C -0.15 -1.86 6.13 30.68 0.19 -1.67 16 11 C 0.05 0.91 6.85 72.01 0.49 1.40 16 12 O -0.40 -9.87 10.37 -144.41 -1.50 -11.37 16 13 C 0.51 13.82 7.23 87.65 0.63 14.46 16 14 O -0.57 -21.83 16.12 16.00 0.26 -21.57 16 15 N -0.69 -15.35 5.16 -440.04 -2.27 -17.62 16 16 C 0.13 3.16 4.29 45.52 0.20 3.36 16 17 H 0.09 2.49 7.50 -2.38 -0.02 2.47 16 18 C -0.15 -4.49 7.45 31.21 0.23 -4.25 16 19 C -0.11 -3.23 3.64 -10.17 -0.04 -3.26 16 20 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 21 C 0.16 6.22 6.10 86.38 0.53 6.74 16 22 N -0.74 -38.17 5.60 -343.45 -1.92 -40.09 16 23 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 24 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 26 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 27 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 31 C -0.11 -2.44 7.38 31.12 0.23 -2.21 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 0.74 7.56 -2.39 -0.02 0.72 16 34 H 0.09 0.71 7.87 -2.39 -0.02 0.69 16 35 H 0.05 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.10 0.96 7.87 -2.38 -0.02 0.94 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.58 8.14 -2.38 -0.02 0.57 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.42 6.56 8.12 -92.71 -0.75 5.81 16 46 H 0.08 2.66 7.91 -2.39 -0.02 2.64 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 50 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 51 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 52 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -80.57 424.05 0.48 -80.09 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.58 Total: 33.99 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.37 Total: -1.70 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -3.91 Total: -117.46 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -2.43 Total: -43.60 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -80.57 0.48 -80.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717653429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.447 kcal (2) G-P(sol) polarization free energy of solvation -80.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds