Wall clock time and date at job start Sat Apr 11 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47343 * 2 1 4 4 C 1.36932 * 120.00441 * 96.85927 * 3 2 1 5 5 H 1.08002 * 120.00149 * 162.96195 * 4 3 2 6 6 C 1.38808 * 120.00108 * 342.96077 * 4 3 2 7 7 N 1.31624 * 120.00076 * 349.55767 * 6 4 3 8 8 Si 1.86804 * 120.00314 * 169.56395 * 6 4 3 9 9 H 1.48495 * 109.46760 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47003 * 120.00031 * 8 6 4 11 11 H 1.48504 * 109.46977 * 239.99966 * 8 6 4 12 12 C 1.46504 * 119.99530 * 276.86535 * 3 2 1 13 13 C 1.53006 * 109.46910 * 276.29411 * 12 3 2 14 14 C 1.53038 * 109.46099 * 292.00157 * 13 12 3 15 15 C 1.53187 * 109.31256 * 178.60115 * 14 13 12 16 16 N 1.46923 * 108.76587 * 54.65413 * 15 14 13 17 17 C 1.34776 * 120.63024 * 126.41000 * 16 15 14 18 18 O 1.21286 * 120.00158 * 179.97438 * 17 16 15 19 19 C 1.50696 * 120.00127 * 359.97374 * 17 16 15 20 20 O 1.42907 * 109.47381 * 180.02562 * 19 17 16 21 21 C 1.42899 * 114.00245 * 179.97438 * 20 19 17 22 22 H 1.09000 * 110.43650 * 330.70504 * 21 20 19 23 23 C 1.54808 * 110.49024 * 208.15617 * 21 20 19 24 24 C 1.55222 * 101.98599 * 220.52316 * 23 21 20 25 25 O 1.44372 * 103.57048 * 36.87841 * 24 23 21 26 26 C 1.43740 * 106.97655 * 320.01460 * 25 24 23 27 27 C 1.46930 * 118.74030 * 306.38299 * 16 15 14 28 28 C 1.53039 * 109.45847 * 171.94477 * 13 12 3 29 29 H 1.09003 * 109.47373 * 306.88326 * 1 2 3 30 30 H 1.09005 * 109.47078 * 66.88097 * 1 2 3 31 31 H 1.08998 * 109.47188 * 186.87916 * 1 2 3 32 32 H 1.09007 * 109.46887 * 119.99539 * 2 1 3 33 33 H 1.08994 * 109.47126 * 239.99196 * 2 1 3 34 34 H 0.96995 * 120.00374 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47662 * 36.29578 * 12 3 2 36 36 H 1.08999 * 109.47282 * 156.30062 * 12 3 2 37 37 H 1.09002 * 109.45557 * 51.97319 * 13 12 3 38 38 H 1.09000 * 109.49715 * 298.56435 * 14 13 12 39 39 H 1.08996 * 109.49651 * 58.66264 * 14 13 12 40 40 H 1.09002 * 109.60041 * 294.86748 * 15 14 13 41 41 H 1.08994 * 109.70557 * 174.50848 * 15 14 13 42 42 H 1.08998 * 109.47278 * 300.00366 * 19 17 16 43 43 H 1.09000 * 109.47160 * 60.00292 * 19 17 16 44 44 H 1.08996 * 110.90538 * 338.64423 * 23 21 20 45 45 H 1.09000 * 110.90478 * 102.24484 * 23 21 20 46 46 H 1.09010 * 110.51910 * 278.38222 * 24 23 21 47 47 H 1.08995 * 110.77732 * 155.50505 * 24 23 21 48 48 H 1.08999 * 109.88015 * 267.08647 * 26 25 24 49 49 H 1.09000 * 109.88130 * 145.93328 * 26 25 24 50 50 H 1.09000 * 109.58782 * 293.82141 * 27 16 15 51 51 H 1.09000 * 109.58907 * 173.39781 * 27 16 15 52 52 H 1.08999 * 109.49696 * 301.33707 * 28 13 12 53 53 H 1.08996 * 109.49766 * 61.43675 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3802 1.9795 1.1773 5 1 2.9872 2.8728 1.1649 6 6 1.9668 1.4382 2.3868 7 7 1.0651 0.4794 2.4047 8 14 2.6898 2.0704 3.9890 9 1 3.6754 3.1424 3.6982 10 1 1.6030 2.6157 4.8414 11 1 3.3654 0.9559 4.7009 12 6 2.1196 2.1223 -1.2597 13 6 3.4424 1.7797 -1.9481 14 6 4.6049 2.3434 -1.1280 15 6 5.9288 1.9686 -1.8015 16 7 5.8960 2.4282 -3.1966 17 6 6.8788 3.2105 -3.6851 18 8 6.8406 3.5830 -4.8387 19 6 8.0253 3.6224 -2.7980 20 8 8.9301 4.4434 -3.5392 21 6 10.0589 4.8912 -2.7860 22 1 9.8009 4.9811 -1.7308 23 6 10.5748 6.2436 -3.3349 24 6 12.1138 6.0544 -3.2637 25 8 12.3008 4.6656 -3.6110 26 6 11.2470 3.9272 -2.9704 27 6 4.7719 2.0183 -4.0493 28 6 3.4610 2.3924 -3.3504 29 1 -0.3634 0.6168 0.8220 30 1 -0.3633 0.4035 -0.9452 31 1 -0.3633 -1.0202 0.1231 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 0.7765 0.1008 3.2498 35 1 1.2894 1.8477 -1.9106 36 1 2.0827 3.1924 -1.0557 37 1 3.5426 0.6969 -2.0235 38 1 4.5189 3.4287 -1.0732 39 1 4.5773 1.9246 -0.1221 40 1 6.0584 0.8866 -1.7762 41 1 6.7560 2.4479 -1.2782 42 1 7.6418 4.1829 -1.9454 43 1 8.5477 2.7339 -2.4434 44 1 10.2490 6.3953 -4.3640 45 1 10.2524 7.0692 -2.7005 46 1 12.4765 6.2499 -2.2545 47 1 12.6165 6.7010 -3.9829 48 1 11.5851 3.5656 -1.9994 49 1 10.9487 3.0871 -3.5977 50 1 4.8071 0.9404 -4.2073 51 1 4.8343 2.5325 -5.0084 52 1 2.6191 2.0083 -3.9264 53 1 3.3859 3.4771 -3.2744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725024430.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:46 Heat of formation + Delta-G solvation = -115.049162 kcal Electronic energy + Delta-G solvation = -30777.140581 eV Core-core repulsion = 26649.189416 eV Total energy + Delta-G solvation = -4127.951165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37190 -40.52988 -39.12438 -37.96776 -37.33461 -34.65292 -32.86075 -32.49413 -32.08650 -30.86669 -29.95960 -29.04312 -27.68780 -25.50727 -24.16163 -24.07212 -23.64954 -22.33914 -22.23178 -21.10743 -19.98931 -18.62844 -18.48813 -18.06729 -17.31682 -17.28354 -16.95940 -16.76095 -16.40724 -15.80919 -15.65680 -15.46524 -15.31858 -15.06753 -14.87224 -14.71268 -14.40576 -14.05958 -13.87197 -13.68434 -13.47894 -13.44487 -13.25318 -13.08248 -12.89011 -12.77273 -12.70361 -12.51326 -12.40167 -12.30013 -12.13035 -11.91911 -11.86399 -11.72950 -11.62904 -11.38993 -11.17340 -11.11844 -10.99231 -10.76423 -10.48949 -10.32004 -9.68906 -8.59782 -7.64414 -5.09383 1.50208 1.51801 1.55020 1.62285 1.67781 2.60086 2.69837 2.96697 3.42402 3.44298 3.54265 3.71377 3.85441 3.86544 4.00503 4.03370 4.11138 4.16488 4.19210 4.21601 4.23541 4.36317 4.41975 4.50278 4.55316 4.61376 4.72261 4.76315 4.79952 4.80712 4.87434 4.88915 4.89611 5.02942 5.06921 5.09901 5.12684 5.15503 5.21536 5.29890 5.36771 5.43094 5.64719 5.67038 5.72932 5.80272 5.92302 6.05594 6.21990 6.36758 6.51106 7.09331 7.33780 8.04656 8.46671 9.34364 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.002423 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.000424 B =11553.797393 C =13087.596122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.175 3.825 3 N -0.609 5.609 4 C -0.232 4.232 5 H 0.075 0.925 6 C -0.061 4.061 7 N -0.929 5.929 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.305 1.305 11 H -0.297 1.297 12 C 0.155 3.845 13 C -0.094 4.094 14 C -0.117 4.117 15 C 0.109 3.891 16 N -0.603 5.603 17 C 0.510 3.490 18 O -0.577 6.577 19 C 0.043 3.957 20 O -0.380 6.380 21 C 0.048 3.952 22 H 0.109 0.891 23 C -0.153 4.153 24 C 0.045 3.955 25 O -0.404 6.404 26 C 0.022 3.978 27 C 0.116 3.884 28 C -0.117 4.117 29 H 0.052 0.948 30 H 0.015 0.985 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.240 0.760 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.493 6.566 -8.320 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.050 3.950 3 N -0.331 5.331 4 C -0.362 4.362 5 H 0.093 0.907 6 C -0.255 4.255 7 N -0.578 5.578 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.233 1.233 11 H -0.224 1.224 12 C 0.028 3.972 13 C -0.115 4.115 14 C -0.155 4.155 15 C -0.012 4.012 16 N -0.337 5.337 17 C 0.299 3.701 18 O -0.457 6.457 19 C -0.036 4.036 20 O -0.298 6.298 21 C -0.010 4.010 22 H 0.127 0.873 23 C -0.191 4.191 24 C -0.031 4.031 25 O -0.323 6.323 26 C -0.055 4.055 27 C -0.006 4.006 28 C -0.155 4.155 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.128 0.872 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.097 0.903 51 H 0.096 0.904 52 H 0.101 0.899 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.564 6.661 -9.111 20.878 hybrid contribution -0.517 0.054 1.338 1.436 sum 17.047 6.715 -7.773 19.903 Atomic orbital electron populations 1.22096 0.99387 0.98971 0.98375 1.20563 0.92283 0.84918 0.97244 1.44253 1.75848 1.10581 1.02434 1.19543 1.23852 1.08472 0.84353 0.90732 1.25526 0.99111 1.00584 1.00242 1.70315 1.32939 1.30726 1.23801 0.85316 0.77424 0.77393 0.80975 1.19096 1.23309 1.22426 1.20868 0.94662 0.94746 0.86875 1.21582 0.96535 0.99585 0.93829 1.21798 0.93551 1.00309 0.99828 1.21983 0.99055 1.00847 0.79340 1.48196 1.22587 1.49629 1.13312 1.20779 0.83751 0.77746 0.87847 1.90684 1.78413 1.56290 1.20275 1.22480 0.89908 0.97448 0.93782 1.88081 1.34849 1.68373 1.38547 1.23861 0.85696 0.94163 0.97245 0.87339 1.23302 0.96012 0.96490 1.03305 1.23782 0.94427 0.82434 1.02462 1.88868 1.50028 1.19998 1.73421 1.23837 0.87181 0.95486 0.98988 1.21596 0.84815 1.00322 0.93906 1.21837 0.96975 1.00744 0.95987 0.92911 0.96548 0.95248 0.92027 0.96592 0.94991 0.94786 0.94303 0.92130 0.92847 0.90637 0.90101 0.87593 0.87548 0.87397 0.91062 0.87200 0.89736 0.87621 0.89367 0.90248 0.90336 0.90420 0.89891 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 9.52 71.98 0.69 -5.12 16 2 C 0.18 7.97 5.60 86.38 0.48 8.45 16 3 N -0.61 -27.25 2.36 -701.99 -1.66 -28.91 16 4 C -0.23 -11.35 8.31 84.03 0.70 -10.65 16 5 H 0.07 3.52 7.55 -2.91 -0.02 3.50 16 6 C -0.06 -3.15 5.15 84.86 0.44 -2.71 16 7 N -0.93 -50.57 8.11 21.65 0.18 -50.40 16 8 Si 0.96 42.27 29.57 68.60 2.03 44.30 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.15 5.63 5.12 86.38 0.44 6.08 16 13 C -0.09 -2.72 2.33 -10.77 -0.03 -2.75 16 14 C -0.12 -3.14 5.00 30.67 0.15 -2.99 16 15 C 0.11 2.19 6.34 86.36 0.55 2.74 16 16 N -0.60 -14.08 2.97 -818.91 -2.43 -16.51 16 17 C 0.51 13.37 7.78 87.66 0.68 14.05 16 18 O -0.58 -20.50 15.91 15.99 0.25 -20.25 16 19 C 0.04 0.78 4.62 71.23 0.33 1.11 16 20 O -0.38 -8.60 9.49 -129.94 -1.23 -9.83 16 21 C 0.05 0.73 3.51 31.58 0.11 0.84 16 22 H 0.11 1.00 7.84 -2.39 -0.02 0.99 16 23 C -0.15 -2.12 6.92 31.97 0.22 -1.90 16 24 C 0.04 0.56 7.72 72.74 0.56 1.13 16 25 O -0.40 -7.98 11.52 -148.98 -1.72 -9.69 16 26 C 0.02 0.35 7.52 72.36 0.54 0.89 16 27 C 0.12 2.76 6.43 86.36 0.56 3.31 16 28 C -0.12 -2.86 5.35 30.67 0.16 -2.70 16 29 H 0.05 2.75 6.40 -2.39 -0.02 2.73 16 30 H 0.02 0.65 8.13 -2.38 -0.02 0.63 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 3.19 5.94 -2.38 -0.01 3.18 16 33 H 0.02 0.66 7.89 -2.39 -0.02 0.64 16 34 H 0.24 13.01 8.31 -92.71 -0.77 12.24 16 35 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.04 1.46 7.98 -2.39 -0.02 1.44 16 37 H 0.06 1.85 7.91 -2.39 -0.02 1.83 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 2.45 6.54 -2.39 -0.02 2.43 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.50 5.93 -2.39 -0.01 1.49 16 42 H 0.11 1.43 7.66 -2.39 -0.02 1.41 16 43 H 0.11 1.34 7.94 -2.39 -0.02 1.32 16 44 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 1.45 7.97 -2.39 -0.02 1.43 16 50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.08 2.05 7.01 -2.39 -0.02 2.04 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 53 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.86 407.10 2.88 -64.98 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.87 Total: 16.53 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.59 Total: 9.78 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.92 Total: -95.82 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.70 Total: -39.77 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.86 2.88 -64.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725024430.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.067 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds