Wall clock time and date at job start Sat Apr 11 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46920 * 2 1 4 4 O 1.42898 * 109.47004 * 119.99702 * 2 1 3 5 5 C 1.42901 * 114.00229 * 269.99767 * 4 2 1 6 6 C 1.52998 * 109.47152 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.82920 * 305.70202 * 6 5 4 8 8 C 1.54384 * 109.82811 * 184.81687 * 6 5 4 9 9 C 1.55454 * 102.18539 * 219.18430 * 8 6 5 10 10 C 1.54944 * 100.99034 * 34.04077 * 9 8 6 11 11 O 1.43234 * 109.82818 * 66.59481 * 6 5 4 12 12 C 1.50701 * 109.47481 * 239.99836 * 2 1 3 13 13 O 1.21274 * 120.00146 * 245.00074 * 12 2 1 14 14 N 1.34780 * 119.99507 * 64.99602 * 12 2 1 15 15 C 1.46501 * 119.99348 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.45081 * 60.03710 * 15 14 12 17 17 C 1.53044 * 109.45773 * 180.02562 * 15 14 12 18 18 C 1.53194 * 109.31228 * 58.65766 * 17 15 14 19 19 N 1.46923 * 108.77818 * 54.63278 * 18 17 15 20 20 C 1.36935 * 120.63013 * 126.37083 * 19 18 17 21 21 H 1.07997 * 120.00003 * 332.24113 * 20 19 18 22 22 C 1.38811 * 119.99848 * 152.25074 * 20 19 18 23 23 N 1.31621 * 119.99881 * 335.23772 * 22 20 19 24 24 Si 1.86805 * 120.00093 * 155.52228 * 22 20 19 25 25 H 1.48497 * 109.47162 * 179.71744 * 24 22 20 26 26 H 1.48501 * 109.46645 * 299.71742 * 24 22 20 27 27 H 1.48500 * 109.47160 * 59.71867 * 24 22 20 28 28 C 1.46924 * 118.73831 * 306.64529 * 19 18 17 29 29 C 1.52763 * 109.00800 * 53.30883 * 28 19 18 30 30 H 1.08994 * 109.47230 * 299.99985 * 1 2 3 31 31 H 1.09000 * 109.47163 * 60.00303 * 1 2 3 32 32 H 1.09003 * 109.46920 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47491 * 300.00848 * 5 4 2 34 34 H 1.09007 * 109.46916 * 60.00247 * 5 4 2 35 35 H 1.08989 * 110.85102 * 337.32271 * 8 6 5 36 36 H 1.09002 * 110.84890 * 100.94207 * 8 6 5 37 37 H 1.09001 * 111.06144 * 276.12334 * 9 8 6 38 38 H 1.08994 * 111.18279 * 152.01201 * 9 8 6 39 39 H 1.09000 * 110.31228 * 204.69090 * 10 9 8 40 40 H 1.09002 * 110.39146 * 82.56056 * 10 9 8 41 41 H 0.96993 * 120.00430 * 0.02562 * 14 12 2 42 42 H 1.08997 * 109.47228 * 179.97438 * 16 15 14 43 43 H 1.08994 * 109.46962 * 299.96558 * 16 15 14 44 44 H 1.09004 * 109.46887 * 59.96552 * 16 15 14 45 45 H 1.08996 * 109.49642 * 298.70477 * 17 15 14 46 46 H 1.09001 * 109.52139 * 178.62338 * 17 15 14 47 47 H 1.09006 * 109.58170 * 294.84730 * 18 17 15 48 48 H 1.09001 * 109.58948 * 174.42581 * 18 17 15 49 49 H 0.96997 * 120.00123 * 354.51925 * 23 22 20 50 50 H 1.09002 * 109.59010 * 173.13891 * 28 19 18 51 51 H 1.08994 * 109.59213 * 293.56747 * 28 19 18 52 52 H 1.09003 * 109.56839 * 185.55247 * 29 28 19 53 53 H 1.09000 * 109.36153 * 65.49814 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7079 -0.6407 3.4792 7 1 2.0296 -1.4725 3.6690 8 6 2.8050 0.2527 4.7346 9 6 4.1187 -0.2516 5.3953 10 6 4.9612 -0.6066 4.1443 11 8 4.0210 -1.1388 3.1976 12 6 2.0325 -0.7104 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7919 -0.1942 -2.4520 15 6 2.2799 -0.8851 -3.6481 16 6 1.6684 -2.2861 -3.7123 17 6 1.8755 -0.0942 -4.8944 18 6 2.4613 1.3188 -4.8099 19 7 3.9125 1.2176 -4.6040 20 6 4.7825 1.8675 -5.4381 21 1 4.4993 2.0729 -6.4599 22 6 6.0285 2.2621 -4.9705 23 7 6.2126 2.4712 -3.6841 24 14 7.4418 2.5040 -6.1678 25 1 8.6541 2.9296 -5.4231 26 1 7.7171 1.2265 -6.8730 27 1 7.0778 3.5482 -7.1589 28 6 4.4126 0.4009 -3.4897 29 6 3.8049 -0.9974 -3.5857 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9514 2.0450 34 1 1.2538 0.6548 2.5589 35 1 2.8891 1.3034 4.4574 36 1 1.9513 0.0911 5.3927 37 1 3.9351 -1.1338 6.0086 38 1 4.5943 0.5370 5.9783 39 1 5.7121 -1.3562 4.3941 40 1 5.4386 0.2868 3.7419 41 1 1.2958 0.6347 -2.5391 42 1 2.0308 -2.8004 -4.6023 43 1 1.9566 -2.8493 -2.8248 44 1 0.5821 -2.2068 -3.7554 45 1 0.7886 -0.0347 -4.9506 46 1 2.2590 -0.5945 -5.7836 47 1 2.0098 1.8520 -3.9732 48 1 2.2603 1.8538 -5.7380 49 1 5.4605 2.4274 -3.0731 50 1 5.4989 0.3303 -3.5472 51 1 4.1237 0.8577 -2.5433 52 1 4.0912 -1.5807 -2.7106 53 1 4.1707 -1.4893 -4.4870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754630062.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:02 Heat of formation + Delta-G solvation = -133.443782 kcal Electronic energy + Delta-G solvation = -31885.140801 eV Core-core repulsion = 27756.391986 eV Total energy + Delta-G solvation = -4128.748815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.65897 -40.58419 -39.47463 -38.20450 -36.34267 -34.09560 -33.26588 -33.02216 -31.97389 -31.67846 -30.77467 -28.98936 -26.67982 -25.89162 -25.23721 -24.08010 -22.86286 -22.61374 -22.21155 -21.59649 -20.25485 -19.42759 -18.48960 -18.04167 -17.84386 -16.98081 -16.56416 -16.48535 -16.12318 -16.05346 -15.73697 -15.60447 -15.39973 -15.14503 -14.95675 -14.63979 -14.45433 -14.28016 -14.06128 -13.69096 -13.45385 -13.45298 -13.30978 -13.08476 -12.96096 -12.77320 -12.67803 -12.51217 -12.44735 -12.36958 -12.21534 -12.10811 -12.04160 -11.93414 -11.86326 -11.73594 -11.43343 -11.23906 -10.89488 -10.52302 -10.47319 -10.29806 -10.03598 -8.91912 -8.25194 -5.40021 1.55744 1.63164 1.64282 1.82150 1.86921 2.64658 2.74367 2.97469 3.21397 3.50173 3.52546 3.60112 3.76636 3.85625 3.88111 3.91022 3.95413 4.03349 4.09182 4.13933 4.21202 4.32890 4.33374 4.42189 4.47931 4.58376 4.59221 4.67482 4.70579 4.76517 4.77955 4.79338 4.81764 4.85548 4.91188 4.92329 4.99959 5.03162 5.09110 5.15418 5.17115 5.20101 5.22645 5.29187 5.39553 5.64904 5.84112 5.98492 6.18454 6.37703 6.62997 7.05546 7.30598 7.77445 8.23693 8.99922 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.003226 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.648215 B = 8677.685630 C =10383.991698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.068 3.932 3 H 0.091 0.909 4 O -0.380 6.380 5 C 0.045 3.955 6 C 0.074 3.926 7 H 0.085 0.915 8 C -0.139 4.139 9 C -0.146 4.146 10 C 0.032 3.968 11 O -0.408 6.408 12 C 0.509 3.491 13 O -0.560 6.560 14 N -0.703 5.703 15 C 0.189 3.811 16 C -0.150 4.150 17 C -0.122 4.122 18 C 0.142 3.858 19 N -0.614 5.614 20 C -0.353 4.353 21 H 0.056 0.944 22 C -0.078 4.078 23 N -0.944 5.944 24 Si 1.112 2.888 25 H -0.295 1.295 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.176 3.824 29 C -0.136 4.136 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.408 0.592 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.252 0.748 50 H 0.028 0.972 51 H -0.004 1.004 52 H 0.055 0.945 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 -2.852 14.743 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 H 0.109 0.891 4 O -0.299 6.299 5 C -0.032 4.032 6 C 0.017 3.983 7 H 0.103 0.897 8 C -0.176 4.176 9 C -0.183 4.183 10 C -0.044 4.044 11 O -0.329 6.329 12 C 0.295 3.705 13 O -0.438 6.438 14 N -0.356 5.356 15 C 0.104 3.896 16 C -0.208 4.208 17 C -0.161 4.161 18 C 0.017 3.983 19 N -0.339 5.339 20 C -0.483 4.483 21 H 0.073 0.927 22 C -0.274 4.274 23 N -0.586 5.586 24 Si 0.937 3.063 25 H -0.221 1.221 26 H -0.210 1.210 27 H -0.196 1.196 28 C 0.050 3.950 29 C -0.176 4.176 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.047 0.953 51 H 0.014 0.986 52 H 0.073 0.927 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.509 -3.551 14.509 20.140 hybrid contribution -1.180 0.390 0.158 1.252 sum -14.689 -3.160 14.667 20.997 Atomic orbital electron populations 1.22180 0.90533 1.03696 1.05035 1.22041 0.97079 0.95855 0.84362 0.89092 1.88057 1.86955 1.35117 1.19728 1.23284 1.00781 0.92866 0.86237 1.22967 0.84918 0.96992 0.93463 0.89723 1.23157 0.99957 0.99928 0.94581 1.23281 0.94914 1.03098 0.96995 1.23633 0.92893 0.98960 0.88936 1.88583 1.18233 1.70684 1.55359 1.20888 0.79060 0.85262 0.85256 1.90635 1.40858 1.25432 1.86914 1.45942 1.57298 1.27688 1.04707 1.20158 0.91896 0.92947 0.84633 1.22102 1.01209 0.95135 1.02364 1.22200 1.01707 0.96294 0.95930 1.21085 0.83185 0.95046 0.98961 1.44303 1.01802 1.54173 1.33590 1.20234 0.99807 1.35277 0.93001 0.92667 1.27167 1.03098 0.97098 1.00082 1.70902 1.34700 1.48487 1.04509 0.82894 0.73314 0.76936 0.73156 1.22107 1.20966 1.19597 1.20392 0.96344 0.89509 0.88754 1.22225 0.96736 0.97762 1.00882 0.89094 0.89017 0.92038 0.93874 0.88763 0.89347 0.87001 0.89404 0.87666 0.89387 0.92775 0.75508 0.91327 0.93032 0.90563 0.87951 0.90978 0.95580 0.92313 0.93856 0.95301 0.98561 0.92685 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.07 1.83 3.13 29.85 0.09 1.92 16 3 H 0.09 2.25 7.79 -2.39 -0.02 2.23 16 4 O -0.38 -11.96 9.51 -126.48 -1.20 -13.17 16 5 C 0.04 1.04 5.28 71.98 0.38 1.42 16 6 C 0.07 1.65 3.81 31.06 0.12 1.77 16 7 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.14 -1.81 6.56 31.91 0.21 -1.60 16 9 C -0.15 -1.93 7.16 32.10 0.23 -1.70 16 10 C 0.03 0.69 7.78 72.65 0.57 1.25 16 11 O -0.41 -12.46 11.00 -146.64 -1.61 -14.08 16 12 C 0.51 17.55 6.60 87.66 0.58 18.13 16 13 O -0.56 -24.59 12.72 15.98 0.20 -24.38 16 14 N -0.70 -21.38 4.06 -422.80 -1.72 -23.10 16 15 C 0.19 6.31 0.66 3.63 0.00 6.31 16 16 C -0.15 -4.44 8.40 71.98 0.60 -3.84 16 17 C -0.12 -3.70 4.96 30.67 0.15 -3.55 16 18 C 0.14 5.43 6.24 86.36 0.54 5.97 16 19 N -0.61 -30.77 2.85 -699.93 -2.00 -32.77 16 20 C -0.35 -19.90 9.49 84.03 0.80 -19.11 16 21 H 0.06 3.06 7.94 -2.91 -0.02 3.03 16 22 C -0.08 -4.56 4.69 84.86 0.40 -4.16 16 23 N -0.94 -59.49 12.42 21.65 0.27 -59.22 16 24 Si 1.11 52.25 29.98 68.60 2.06 54.31 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 C 0.18 8.99 4.41 86.22 0.38 9.37 16 29 C -0.14 -5.90 4.65 30.53 0.14 -5.76 16 30 H 0.09 1.16 7.87 -2.39 -0.02 1.14 16 31 H 0.09 1.23 7.93 -2.39 -0.02 1.21 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.09 1.43 7.87 -2.38 -0.02 1.41 16 35 H 0.09 1.02 7.85 -2.39 -0.02 1.00 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.41 10.18 7.05 -92.71 -0.65 9.53 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.81 6.17 -2.39 -0.01 1.79 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.03 0.93 6.94 -2.38 -0.02 0.92 16 48 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 49 H 0.25 16.21 6.69 -92.71 -0.62 15.59 16 50 H 0.03 1.71 6.31 -2.39 -0.02 1.70 16 51 H 0.00 -0.19 7.46 -2.39 -0.02 -0.21 16 52 H 0.05 2.60 6.20 -2.39 -0.01 2.58 16 53 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -82.11 404.95 2.25 -79.86 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.38 Total: 28.22 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.87 Total: 4.34 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.45 Total: -115.09 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -2.61 Total: -51.63 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.06 Total: 54.31 kcal Total: -82.11 2.25 -79.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754630062.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.584 kcal (2) G-P(sol) polarization free energy of solvation -82.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds