Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46916 * 2 1 4 4 O 1.42896 * 109.47281 * 239.99309 * 2 1 3 5 5 C 1.42907 * 113.99861 * 90.00270 * 4 2 1 6 6 C 1.52998 * 109.47078 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.27401 * 55.63900 * 6 5 4 8 8 C 1.54953 * 110.30600 * 177.83210 * 6 5 4 9 9 C 1.55303 * 100.93838 * 155.36134 * 8 6 5 10 10 C 1.54380 * 102.25291 * 325.86467 * 9 8 6 11 11 O 1.43231 * 107.59060 * 21.35885 * 10 9 8 12 12 C 1.50707 * 109.46945 * 119.99412 * 2 1 3 13 13 O 1.21277 * 119.99743 * 120.00007 * 12 2 1 14 14 N 1.34775 * 119.99665 * 300.00621 * 12 2 1 15 15 C 1.46504 * 119.99532 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.45621 * 299.99541 * 15 14 12 17 17 C 1.53039 * 109.46143 * 59.96670 * 15 14 12 18 18 C 1.53187 * 109.31155 * 58.63149 * 17 15 14 19 19 N 1.46926 * 108.76817 * 54.65462 * 18 17 15 20 20 C 1.36935 * 120.63108 * 126.36240 * 19 18 17 21 21 H 1.07999 * 120.00174 * 331.85696 * 20 19 18 22 22 C 1.38813 * 119.99935 * 151.86661 * 20 19 18 23 23 N 1.31615 * 120.00019 * 343.05857 * 22 20 19 24 24 Si 1.86805 * 119.99960 * 163.06723 * 22 20 19 25 25 H 1.48496 * 109.47177 * 89.99303 * 24 22 20 26 26 H 1.48503 * 109.46509 * 209.99403 * 24 22 20 27 27 H 1.48494 * 109.46966 * 329.99257 * 24 22 20 28 28 C 1.46925 * 118.73676 * 306.38327 * 19 18 17 29 29 C 1.53042 * 109.45838 * 180.02562 * 15 14 12 30 30 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47199 * 300.00678 * 1 2 3 32 32 H 1.08999 * 109.46722 * 60.00481 * 1 2 3 33 33 H 1.08999 * 109.47050 * 299.99939 * 5 4 2 34 34 H 1.09000 * 109.47108 * 59.99341 * 5 4 2 35 35 H 1.09004 * 111.12363 * 273.27811 * 8 6 5 36 36 H 1.09001 * 111.12237 * 37.44231 * 8 6 5 37 37 H 1.09001 * 110.84844 * 207.67746 * 9 8 6 38 38 H 1.09005 * 110.84842 * 84.05798 * 9 8 6 39 39 H 1.09001 * 109.83426 * 261.84342 * 10 9 8 40 40 H 1.09008 * 109.90431 * 140.91610 * 10 9 8 41 41 H 0.96995 * 120.00782 * 359.97438 * 14 12 2 42 42 H 1.08997 * 109.47907 * 60.00073 * 16 15 14 43 43 H 1.09000 * 109.47007 * 180.02562 * 16 15 14 44 44 H 1.09003 * 109.47420 * 299.99645 * 16 15 14 45 45 H 1.09001 * 109.49269 * 178.59765 * 17 15 14 46 46 H 1.08998 * 109.50074 * 298.68842 * 17 15 14 47 47 H 1.09002 * 109.59687 * 294.86081 * 18 17 15 48 48 H 1.09000 * 109.70061 * 174.50507 * 18 17 15 49 49 H 0.97000 * 120.00164 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.58651 * 293.82325 * 28 19 18 51 51 H 1.09001 * 109.70425 * 173.46735 * 28 19 18 52 52 H 1.08999 * 109.50069 * 61.30945 * 29 15 14 53 53 H 1.09000 * 109.49210 * 181.37189 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1666 5 6 2.2002 0.1828 -2.2941 6 6 2.7093 -0.6409 -3.4787 7 1 2.0242 -1.4618 -3.6901 8 6 2.8744 0.2600 -4.7286 9 6 3.9423 -0.5364 -5.5268 10 6 4.8123 -1.1366 -4.4016 11 8 4.0253 -1.1474 -3.2050 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7066 -0.2497 2.4546 15 6 2.1954 -0.9400 3.6509 16 6 1.6858 -2.3826 3.6509 17 6 3.7258 -0.9398 3.6501 18 6 4.2322 0.5055 3.6148 19 7 3.6296 1.2450 4.7322 20 6 4.4154 1.9303 5.6199 21 1 5.4266 1.6024 5.8109 22 6 3.9123 3.0463 6.2744 23 7 2.8325 3.6452 5.8188 24 14 4.7680 3.6981 7.8016 25 1 5.7914 4.6989 7.4065 26 1 3.7682 4.3382 8.6939 27 1 5.4244 2.5754 8.5185 28 6 2.1677 1.2348 4.8794 29 6 1.6843 -0.2187 4.9002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2540 0.6545 -2.5589 34 1 2.9320 0.9512 -2.0450 35 1 1.9407 0.3331 -5.2863 36 1 3.2447 1.2479 -4.4545 37 1 4.5305 0.1291 -6.1587 38 1 3.4764 -1.3241 -6.1190 39 1 5.7011 -0.5231 -4.2541 40 1 5.1046 -2.1542 -4.6612 41 1 1.1492 0.5390 2.5436 42 1 2.0492 -2.8964 2.7609 43 1 2.0490 -2.8962 4.5410 44 1 0.5958 -2.3829 3.6510 45 1 4.0900 -1.4313 4.5523 46 1 4.0892 -1.4741 2.7723 47 1 3.9452 0.9705 2.6717 48 1 5.3178 0.5169 3.7123 49 1 2.4811 4.4253 6.2760 50 1 1.7123 1.7593 4.0394 51 1 1.8888 1.7261 5.8116 52 1 0.5946 -0.2396 4.9122 53 1 2.0676 -0.7174 5.7904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754630063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -129.045463 kcal Electronic energy + Delta-G solvation = -31601.934945 eV Core-core repulsion = 27473.376855 eV Total energy + Delta-G solvation = -4128.558090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56011 -40.50247 -39.36249 -38.11375 -36.06160 -34.06764 -33.24153 -33.01000 -31.92496 -31.57686 -30.72895 -29.08134 -26.60756 -25.94942 -25.16397 -23.94912 -22.78607 -22.52448 -22.28710 -21.54223 -20.13688 -18.88845 -18.35881 -17.94536 -17.74281 -16.90274 -16.83091 -16.42033 -16.16000 -15.89115 -15.79482 -15.48169 -15.29004 -15.04606 -14.77104 -14.54624 -14.44539 -14.15108 -14.00294 -13.63358 -13.38008 -13.23531 -13.12283 -13.07303 -12.96568 -12.84316 -12.66395 -12.61636 -12.53374 -12.39570 -12.19447 -12.13234 -12.06642 -11.98433 -11.76777 -11.69023 -11.31843 -11.30448 -10.83642 -10.53237 -10.48094 -10.23759 -9.92824 -8.64937 -7.87462 -5.31368 1.46462 1.48339 1.57876 1.70064 1.92564 2.51556 2.80157 2.93234 3.27418 3.54522 3.62290 3.72230 3.85514 3.91320 3.95168 3.96929 4.06376 4.09359 4.13974 4.17641 4.26023 4.37463 4.47446 4.48423 4.57263 4.62239 4.71040 4.74513 4.80021 4.81392 4.82282 4.88006 4.88416 4.92031 4.96733 4.98118 5.00853 5.14721 5.19339 5.22026 5.23740 5.27705 5.36778 5.49143 5.64492 5.69817 5.78019 6.03848 6.20348 6.40104 6.69723 7.16787 7.35947 7.86068 8.38722 9.18486 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002638 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.155170 B =10611.203404 C =11310.523543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 H 0.095 0.905 4 O -0.379 6.379 5 C 0.055 3.945 6 C 0.075 3.925 7 H 0.075 0.925 8 C -0.141 4.141 9 C -0.147 4.147 10 C 0.035 3.965 11 O -0.410 6.410 12 C 0.511 3.489 13 O -0.560 6.560 14 N -0.703 5.703 15 C 0.189 3.811 16 C -0.150 4.150 17 C -0.132 4.132 18 C 0.155 3.845 19 N -0.605 5.605 20 C -0.266 4.266 21 H 0.057 0.943 22 C -0.043 4.043 23 N -0.928 5.928 24 Si 0.963 3.037 25 H -0.287 1.287 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.179 3.821 29 C -0.131 4.131 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.406 0.594 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.006 0.994 48 H 0.038 0.962 49 H 0.251 0.749 50 H 0.011 0.989 51 H 0.058 0.942 52 H 0.085 0.915 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 -6.317 -20.334 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.112 0.888 4 O -0.297 6.297 5 C -0.021 4.021 6 C 0.018 3.982 7 H 0.093 0.907 8 C -0.178 4.178 9 C -0.184 4.184 10 C -0.042 4.042 11 O -0.330 6.330 12 C 0.298 3.702 13 O -0.438 6.438 14 N -0.356 5.356 15 C 0.103 3.897 16 C -0.208 4.208 17 C -0.172 4.172 18 C 0.029 3.971 19 N -0.329 5.329 20 C -0.396 4.396 21 H 0.075 0.925 22 C -0.239 4.239 23 N -0.574 5.574 24 Si 0.792 3.208 25 H -0.214 1.214 26 H -0.214 1.214 27 H -0.200 1.200 28 C 0.053 3.947 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.243 0.757 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.029 0.971 51 H 0.076 0.924 52 H 0.104 0.896 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.150 -7.155 -20.156 22.552 hybrid contribution 0.545 1.176 0.840 1.545 sum -6.606 -5.978 -19.316 21.271 Atomic orbital electron populations 1.22201 0.91068 1.03649 1.04863 1.22009 0.96749 0.96075 0.84388 0.88757 1.88051 1.86939 1.35078 1.19661 1.23011 1.00843 0.92658 0.85619 1.23177 0.84956 0.96165 0.93875 0.90675 1.23266 1.01488 0.98920 0.94150 1.23118 0.97136 1.00579 0.97559 1.23349 0.94925 1.01292 0.84585 1.88563 1.24745 1.85982 1.33727 1.20805 0.79808 0.84546 0.85066 1.90623 1.38478 1.27688 1.86990 1.46021 1.53124 1.31877 1.04595 1.20161 0.92869 0.92396 0.84263 1.22107 1.01353 0.94856 1.02506 1.22236 0.96053 0.97529 1.01386 1.20798 0.95683 0.91142 0.89441 1.44251 1.02699 1.57588 1.28333 1.19425 0.97478 1.05593 1.17107 0.92529 1.25681 0.99343 0.96054 1.02827 1.70133 1.25741 1.21089 1.40392 0.85349 0.77587 0.77961 0.79949 1.21409 1.21404 1.20022 1.20610 0.82512 0.91989 0.99569 1.22335 1.00829 0.97716 0.96109 0.91956 0.89523 0.89089 0.88612 0.93208 0.87003 0.89638 0.87972 0.89300 0.91362 0.91288 0.75713 0.92591 0.91300 0.91362 0.92017 0.91763 0.97653 0.94337 0.93951 0.97130 0.92357 0.89625 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.42 71.98 0.68 -2.24 16 2 C 0.07 1.80 3.14 29.85 0.09 1.89 16 3 H 0.09 2.25 7.79 -2.39 -0.02 2.23 16 4 O -0.38 -11.23 9.51 -126.82 -1.21 -12.43 16 5 C 0.05 1.17 5.46 71.98 0.39 1.57 16 6 C 0.08 1.54 3.73 31.26 0.12 1.66 16 7 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 8 C -0.14 -1.67 6.57 32.05 0.21 -1.46 16 9 C -0.15 -1.65 7.02 31.85 0.22 -1.43 16 10 C 0.03 0.65 7.79 72.45 0.56 1.21 16 11 O -0.41 -11.47 11.03 -147.43 -1.63 -13.09 16 12 C 0.51 17.10 6.65 87.66 0.58 17.68 16 13 O -0.56 -23.26 12.72 16.02 0.20 -23.06 16 14 N -0.70 -21.99 3.99 -422.79 -1.69 -23.68 16 15 C 0.19 6.40 0.66 3.63 0.00 6.40 16 16 C -0.15 -4.53 8.40 71.98 0.60 -3.93 16 17 C -0.13 -5.23 4.67 30.67 0.14 -5.08 16 18 C 0.16 7.05 6.26 86.36 0.54 7.59 16 19 N -0.61 -30.42 2.99 -699.10 -2.09 -32.51 16 20 C -0.27 -14.78 9.58 84.03 0.81 -13.97 16 21 H 0.06 3.16 7.88 -2.91 -0.02 3.13 16 22 C -0.04 -2.38 4.92 84.86 0.42 -1.96 16 23 N -0.93 -52.89 11.19 21.65 0.24 -52.65 16 24 Si 0.96 44.62 29.59 68.60 2.03 46.65 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 C 0.18 8.04 5.03 86.36 0.43 8.47 16 29 C -0.13 -4.57 4.96 30.67 0.15 -4.41 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.35 7.56 -2.39 -0.02 1.33 16 32 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 33 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 34 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 0.97 8.06 -2.39 -0.02 0.95 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.41 11.41 6.68 -92.71 -0.62 10.79 16 42 H 0.06 1.92 6.17 -2.39 -0.01 1.91 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.06 2.68 6.21 -2.39 -0.01 2.67 16 47 H 0.01 0.26 7.74 -2.39 -0.02 0.24 16 48 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 49 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 50 H 0.01 0.48 6.94 -2.39 -0.02 0.47 16 51 H 0.06 3.00 6.06 -2.39 -0.01 2.98 16 52 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 53 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -74.02 405.45 2.09 -71.93 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.26 Total: 26.86 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.96 Total: 11.99 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.54 Total: -108.84 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.63 Total: -48.59 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.02 2.09 -71.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754630063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.117 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds