Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47171 * 2 1 4 4 C 1.37096 * 120.00047 * 263.75030 * 3 2 1 5 5 H 1.07997 * 120.00082 * 195.06310 * 4 3 2 6 6 C 1.38951 * 120.00144 * 15.06774 * 4 3 2 7 7 N 1.31418 * 119.99585 * 21.57148 * 6 4 3 8 8 Si 1.86795 * 120.00117 * 201.57584 * 6 4 3 9 9 H 1.48497 * 109.47219 * 89.99969 * 8 6 4 10 10 H 1.48506 * 109.47067 * 209.99570 * 8 6 4 11 11 H 1.48497 * 109.47469 * 329.99828 * 8 6 4 12 12 C 1.34778 * 120.00122 * 83.75259 * 3 2 1 13 13 O 1.21292 * 119.99932 * 2.71556 * 12 3 2 14 14 C 1.50702 * 120.00034 * 182.72344 * 12 3 2 15 15 H 1.09000 * 109.47127 * 47.76454 * 14 12 3 16 16 C 1.52997 * 109.46999 * 287.75896 * 14 12 3 17 17 C 1.52995 * 109.47060 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.46972 * 60.00340 * 17 16 14 19 19 C 1.52994 * 109.47256 * 299.99932 * 18 17 16 20 20 H 1.09004 * 109.47073 * 299.99514 * 19 18 17 21 21 N 1.46497 * 109.47211 * 180.02562 * 19 18 17 22 22 C 1.34773 * 120.00489 * 85.00008 * 21 19 18 23 23 O 1.21514 * 119.99817 * 0.02562 * 22 21 19 24 24 O 1.34639 * 120.00332 * 180.02562 * 22 21 19 25 25 C 1.45201 * 117.00014 * 180.02562 * 24 22 21 26 26 C 1.52996 * 109.47573 * 59.99470 * 25 24 22 27 27 C 1.53003 * 109.46859 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.46888 * 299.99226 * 25 24 22 29 29 C 1.52995 * 109.47173 * 59.99748 * 19 18 17 30 30 H 1.08996 * 109.47513 * 52.84478 * 1 2 3 31 31 H 1.09000 * 109.47451 * 172.84807 * 1 2 3 32 32 H 1.08998 * 109.47370 * 292.84546 * 1 2 3 33 33 H 1.08998 * 109.46936 * 239.99563 * 2 1 3 34 34 H 1.08999 * 109.47199 * 120.00319 * 2 1 3 35 35 H 0.97008 * 119.99480 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47636 * 300.00246 * 16 14 12 37 37 H 1.09006 * 109.46588 * 60.00284 * 16 14 12 38 38 H 1.09009 * 109.47332 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47725 * 300.00093 * 17 16 14 40 40 H 1.09000 * 109.46925 * 60.00131 * 18 17 16 41 41 H 1.09009 * 109.47026 * 179.97438 * 18 17 16 42 42 H 0.97003 * 119.99902 * 264.99913 * 21 19 18 43 43 H 1.09001 * 109.46982 * 60.00313 * 26 25 24 44 44 H 1.08998 * 109.47522 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47140 * 300.00435 * 26 25 24 46 46 H 1.08999 * 109.47537 * 59.99917 * 27 25 24 47 47 H 1.09007 * 109.46806 * 179.97438 * 27 25 24 48 48 H 1.09001 * 109.46852 * 299.99086 * 27 25 24 49 49 H 1.09005 * 109.46972 * 59.99984 * 28 25 24 50 50 H 1.08994 * 109.47413 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.47091 * 300.00442 * 28 25 24 52 52 H 1.09006 * 109.46931 * 180.02562 * 29 19 18 53 53 H 1.08998 * 109.46877 * 60.00451 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3686 1.9844 -1.1802 5 1 2.9488 2.8952 -1.1697 6 6 1.9772 1.4239 -2.3899 7 7 0.9548 0.5993 -2.4317 8 14 2.9043 1.8424 -3.9566 9 1 4.0123 0.8727 -4.1502 10 1 1.9770 1.7719 -5.1144 11 1 3.4608 3.2151 -3.8510 12 6 2.1232 2.0589 1.1603 13 8 1.8603 1.5097 2.2093 14 6 2.5669 3.4991 1.1542 15 1 2.0047 4.0493 0.3998 16 6 4.0605 3.5711 0.8307 17 6 4.5109 5.0333 0.8239 18 6 4.2568 5.6515 2.2002 19 6 2.7632 5.5794 2.5238 20 1 2.2010 6.1294 1.7691 21 7 2.5199 6.1719 3.8413 22 6 2.3495 7.5035 3.9604 23 8 2.3973 8.2127 2.9748 24 8 2.1264 8.0481 5.1714 25 6 1.9516 9.4886 5.2243 26 6 0.7499 9.8885 4.3659 27 6 1.7097 9.9201 6.6722 28 6 3.2105 10.1751 4.6906 29 6 2.3128 4.1173 2.5305 30 1 -0.3634 0.6206 -0.8190 31 1 -0.3634 -1.0196 -0.1279 32 1 -0.3634 0.3990 0.9470 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 0.6817 0.2078 -3.2762 36 1 4.6228 3.0209 1.5851 37 1 4.2414 3.1311 -0.1500 38 1 5.5750 5.0847 0.5930 39 1 3.9487 5.5832 0.0692 40 1 4.8191 5.1016 2.9549 41 1 4.5781 6.6932 2.1955 42 1 2.4814 5.6058 4.6281 43 1 -0.1470 9.3994 4.7462 44 1 0.6189 10.9698 4.4053 45 1 0.9217 9.5809 3.3344 46 1 2.5656 9.6353 7.2840 47 1 1.5789 11.0015 6.7119 48 1 0.8126 9.4311 7.0519 49 1 3.3825 9.8675 3.6591 50 1 3.0792 11.2563 4.7299 51 1 4.0666 9.8902 5.3021 52 1 1.2486 4.0660 2.7606 53 1 2.8750 3.5674 3.2852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152625296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = -143.630067 kcal Electronic energy + Delta-G solvation = -31502.129347 eV Core-core repulsion = 27372.938822 eV Total energy + Delta-G solvation = -4129.190526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88549 -41.00921 -39.30907 -37.75835 -36.86076 -35.55207 -34.66407 -33.40771 -32.37239 -31.24931 -30.11434 -28.33040 -28.26439 -26.75977 -25.10544 -24.39561 -23.12419 -22.55565 -21.33164 -20.99600 -20.51331 -19.13023 -18.77002 -17.93081 -17.49288 -17.13364 -16.56763 -16.20001 -16.15783 -15.87371 -15.49307 -15.37467 -15.34527 -14.92509 -14.74311 -14.45324 -14.33082 -13.99471 -13.85097 -13.51520 -13.31715 -13.23761 -13.09516 -12.97140 -12.87543 -12.83300 -12.79141 -12.60834 -12.50408 -12.34640 -12.27912 -12.22305 -12.09416 -11.98518 -11.64384 -11.53889 -11.41927 -11.36883 -11.30510 -11.02711 -10.82777 -10.26259 -10.02131 -9.66164 -8.20982 -5.80424 1.17389 1.45103 1.52994 1.61636 1.79387 2.08120 2.33989 2.97041 3.17099 3.19769 3.75384 3.78946 3.81788 3.84448 3.97892 3.98526 4.18680 4.27871 4.37741 4.44906 4.51648 4.53618 4.58830 4.64622 4.65618 4.74071 4.79275 4.79459 4.83425 4.87321 4.90936 4.94189 5.00723 5.06871 5.12648 5.16061 5.17341 5.22257 5.26289 5.31334 5.32054 5.36774 5.40215 5.42024 5.52752 5.59550 5.62476 5.88227 5.92532 6.44569 6.55540 7.19973 7.37661 7.67943 8.08876 8.76767 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002586 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.667361 B =10824.280042 C =11430.062701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.140 3.860 3 N -0.449 5.449 4 C -0.355 4.355 5 H 0.120 0.880 6 C -0.003 4.003 7 N -0.880 5.880 8 Si 0.979 3.021 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.257 1.257 12 C 0.447 3.553 13 O -0.642 6.642 14 C -0.075 4.075 15 H 0.083 0.917 16 C -0.109 4.109 17 C -0.105 4.105 18 C -0.120 4.120 19 C 0.173 3.827 20 H 0.077 0.923 21 N -0.698 5.698 22 C 0.648 3.352 23 O -0.590 6.590 24 O -0.371 6.371 25 C 0.123 3.877 26 C -0.181 4.181 27 C -0.135 4.135 28 C -0.179 4.179 29 C -0.089 4.089 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.012 0.988 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.268 0.732 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.414 0.586 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.055 0.945 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 16.257 11.196 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 N -0.166 5.166 4 C -0.482 4.482 5 H 0.138 0.862 6 C -0.206 4.206 7 N -0.518 5.518 8 Si 0.803 3.197 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.181 1.181 12 C 0.237 3.763 13 O -0.532 6.532 14 C -0.097 4.097 15 H 0.101 0.899 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.158 4.158 19 C 0.070 3.930 20 H 0.095 0.905 21 N -0.357 5.357 22 C 0.401 3.599 23 O -0.481 6.481 24 O -0.286 6.286 25 C 0.087 3.913 26 C -0.238 4.238 27 C -0.192 4.192 28 C -0.236 4.236 29 C -0.128 4.128 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.121 0.879 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.109 0.891 51 H 0.081 0.919 52 H 0.073 0.927 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.752 16.280 11.090 20.263 hybrid contribution -0.160 -0.682 -0.715 1.001 sum 4.592 15.598 10.374 19.288 Atomic orbital electron populations 1.21871 0.96116 1.01085 0.99470 1.20962 0.94966 0.83709 0.98677 1.44026 1.55208 1.11166 1.06171 1.20240 1.33531 1.11800 0.82656 0.86236 1.26039 0.95542 0.97069 1.01916 1.70249 1.22384 1.31597 1.27567 0.85129 0.77945 0.79339 0.77246 1.20357 1.21493 1.18058 1.20746 0.82806 0.89577 0.83192 1.90475 1.58585 1.71600 1.32510 1.20843 0.98817 0.92118 0.97917 0.89904 1.21577 0.92525 0.97939 1.02631 1.21446 1.02348 0.94011 0.96525 1.21875 0.94556 1.01242 0.98137 1.20855 0.97105 0.92450 0.82593 0.90491 1.44826 1.75064 1.04116 1.11693 1.18206 0.76004 0.83567 0.82098 1.90888 1.57480 1.60898 1.38822 1.86317 1.84410 1.27422 1.30402 1.22426 0.96276 0.73878 0.98702 1.22484 0.96887 1.03499 1.00964 1.21885 1.03240 1.02999 0.91100 1.22464 0.96515 1.02124 1.02487 1.21393 1.01289 0.93194 0.96877 0.90608 0.92974 0.96902 0.90704 0.95183 0.92169 0.92177 0.90671 0.89518 0.91621 0.90765 0.91587 0.75017 0.92248 0.88962 0.92093 0.91103 0.87869 0.91404 0.91955 0.89064 0.91857 0.92654 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 9.52 71.98 0.69 -5.36 16 2 C 0.14 6.94 5.26 86.38 0.45 7.40 16 3 N -0.45 -22.25 2.64 -635.56 -1.68 -23.93 16 4 C -0.36 -17.00 8.46 84.04 0.71 -16.29 16 5 H 0.12 5.27 4.73 -2.91 -0.01 5.26 16 6 C 0.00 -0.14 4.89 84.93 0.42 0.28 16 7 N -0.88 -43.80 8.48 21.66 0.18 -43.61 16 8 Si 0.98 37.86 29.60 68.60 2.03 39.89 16 9 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 10 H -0.29 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 12 C 0.45 21.15 6.86 87.66 0.60 21.75 16 13 O -0.64 -33.61 15.65 -3.07 -0.05 -33.66 16 14 C -0.08 -2.80 1.68 -11.54 -0.02 -2.82 16 15 H 0.08 3.20 7.59 -2.39 -0.02 3.18 16 16 C -0.11 -3.47 4.86 30.59 0.15 -3.32 16 17 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 18 C -0.12 -2.94 5.49 30.59 0.17 -2.77 16 19 C 0.17 4.77 2.45 44.99 0.11 4.88 16 20 H 0.08 2.38 7.57 -2.38 -0.02 2.36 16 21 N -0.70 -17.56 5.08 -570.15 -2.90 -20.46 16 22 C 0.65 17.77 8.02 129.79 1.04 18.81 16 23 O -0.59 -18.70 11.54 19.80 0.23 -18.47 16 24 O -0.37 -8.91 9.94 -55.48 -0.55 -9.46 16 25 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 26 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 27 C -0.14 -1.66 8.85 71.98 0.64 -1.03 16 28 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 29 C -0.09 -2.87 4.05 30.59 0.12 -2.75 16 30 H 0.08 3.89 6.12 -2.39 -0.01 3.88 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 3.80 6.23 -2.39 -0.01 3.78 16 34 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 35 H 0.27 12.73 8.31 -92.70 -0.77 11.96 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.60 5.65 -2.38 -0.01 2.58 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 42 H 0.41 8.88 8.71 -92.71 -0.81 8.07 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 1.51 5.88 -2.38 -0.01 1.49 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 53 H 0.07 2.40 7.97 -2.39 -0.02 2.38 16 Total: -1.00 -61.36 402.81 3.81 -57.54 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.09 Total: 39.09 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.45 Total: 13.06 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -4.39 Total: -88.00 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -0.37 Total: -61.59 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -61.36 3.81 -57.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152625296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.085 kcal (2) G-P(sol) polarization free energy of solvation -61.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds