Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47250 * 2 1 4 4 C 1.42905 * 114.00330 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.90382 * 18.75762 * 4 3 2 6 6 C 1.53944 * 113.61772 * 247.42507 * 4 3 2 7 7 C 1.53780 * 87.11291 * 270.84283 * 6 4 3 8 8 H 1.09000 * 113.61391 * 220.08825 * 7 6 4 9 9 N 1.46502 * 113.61459 * 89.18868 * 7 6 4 10 10 C 1.46503 * 120.00137 * 15.82327 * 9 7 6 11 11 C 1.34772 * 120.00210 * 195.82366 * 9 7 6 12 12 O 1.21358 * 119.99494 * 354.81844 * 11 9 7 13 13 C 1.49446 * 120.00192 * 174.81774 * 11 9 7 14 14 O 1.21349 * 120.00007 * 5.14280 * 13 11 9 15 15 N 1.34777 * 119.99868 * 185.14773 * 13 11 9 16 16 C 1.46503 * 120.00097 * 180.02562 * 15 13 11 17 17 C 1.52994 * 109.47271 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47290 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47133 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00397 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00134 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99940 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47254 * 90.00086 * 23 21 19 25 25 H 1.48506 * 109.46720 * 210.00076 * 23 21 19 26 26 H 1.48497 * 109.47046 * 329.99725 * 23 21 19 27 27 C 1.53774 * 87.07963 * 334.63757 * 7 6 4 28 28 C 1.53001 * 113.61268 * 139.98304 * 27 7 6 29 29 C 1.53000 * 113.61730 * 270.80029 * 27 7 6 30 30 H 1.09001 * 109.47031 * 59.99376 * 1 2 3 31 31 H 1.08992 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47186 * 299.99849 * 1 2 3 33 33 H 1.09003 * 109.47186 * 240.00151 * 2 1 3 34 34 H 1.08998 * 109.47630 * 120.00209 * 2 1 3 35 35 H 1.09001 * 113.53651 * 156.28634 * 6 4 3 36 36 H 1.09001 * 113.74599 * 25.42401 * 6 4 3 37 37 H 1.09007 * 109.46656 * 5.46590 * 10 9 7 38 38 H 1.08992 * 109.47074 * 125.46604 * 10 9 7 39 39 H 1.08996 * 109.47047 * 245.47327 * 10 9 7 40 40 H 0.97001 * 120.00407 * 359.97438 * 15 13 11 41 41 H 1.09007 * 109.46689 * 299.99645 * 16 15 13 42 42 H 1.09000 * 109.47371 * 59.99337 * 16 15 13 43 43 H 1.08999 * 109.47680 * 299.99572 * 17 16 15 44 44 H 1.09000 * 109.47029 * 59.99661 * 17 16 15 45 45 H 1.08994 * 109.47120 * 300.00243 * 18 17 16 46 46 H 1.09000 * 109.46877 * 60.00161 * 18 17 16 47 47 H 0.96998 * 120.00135 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.47236 * 186.36515 * 28 27 7 49 49 H 1.09006 * 109.46958 * 306.36004 * 28 27 7 50 50 H 1.08992 * 109.47426 * 66.35916 * 28 27 7 51 51 H 1.09003 * 109.46726 * 298.47033 * 29 27 7 52 52 H 1.08991 * 109.47119 * 58.46944 * 29 27 7 53 53 H 1.09003 * 109.47288 * 178.47711 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9290 0.5459 -0.3219 6 6 4.0024 2.0488 1.3032 7 6 3.8410 3.4345 0.6562 8 1 4.6697 4.1119 0.8623 9 7 2.5315 4.0458 0.8971 10 6 1.6618 3.5221 1.9534 11 6 2.1269 5.0898 0.1470 12 8 2.8830 5.5837 -0.6636 13 6 0.7471 5.6393 0.3135 14 8 0.0235 5.2078 1.1869 15 7 0.3065 6.6140 -0.5064 16 6 -1.0459 7.1531 -0.3429 17 6 -1.2923 8.2393 -1.3918 18 6 -2.7049 8.8019 -1.2214 19 6 -2.9477 9.8713 -2.2549 20 1 -2.1720 10.1248 -2.9623 21 6 -4.1599 10.5270 -2.2968 22 7 -4.3717 11.4607 -3.1985 23 14 -5.5009 10.0901 -1.0719 24 1 -5.3637 10.9415 0.1369 25 1 -6.8309 10.3202 -1.6911 26 1 -5.3742 8.6612 -0.6880 27 6 3.9489 2.7252 -0.7039 28 6 2.9883 3.2755 -1.7600 29 6 5.3849 2.5969 -1.2161 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.0402 1.7713 1.4877 36 1 3.3624 1.8954 2.1721 37 1 2.1921 2.7500 2.5110 38 1 1.3827 4.3309 2.6284 39 1 0.7639 3.0954 1.5064 40 1 0.8850 6.9591 -1.2043 41 1 -1.7742 6.3521 -0.4707 42 1 -1.1483 7.5814 0.6542 43 1 -0.5641 9.0401 -1.2636 44 1 -1.1898 7.8113 -2.3890 45 1 -3.4329 8.0009 -1.3499 46 1 -2.8077 9.2298 -0.2242 47 1 -5.2246 11.9217 -3.2282 48 1 3.0396 2.6563 -2.6557 49 1 1.9714 3.2634 -1.3677 50 1 3.2695 4.2986 -2.0091 51 1 5.8102 3.5906 -1.3576 52 1 5.9820 2.0463 -0.4894 53 1 5.3854 2.0629 -2.1663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343154675.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -102.847119 kcal Electronic energy + Delta-G solvation = -31325.811925 eV Core-core repulsion = 27198.389880 eV Total energy + Delta-G solvation = -4127.422044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46265 -40.94817 -39.25801 -37.66974 -37.21958 -35.74809 -35.01592 -33.29053 -32.05442 -31.28007 -29.38416 -28.39346 -27.90324 -26.87949 -25.07034 -23.93142 -23.51741 -22.82338 -22.29487 -21.08166 -19.39932 -18.98588 -18.58165 -18.02778 -17.79640 -17.32980 -16.88520 -16.63533 -16.50222 -16.32074 -16.07257 -15.69754 -15.28996 -14.94607 -14.78268 -14.60195 -14.29003 -14.09833 -14.03739 -13.82670 -13.75667 -13.63308 -13.57504 -13.13939 -13.05527 -12.89453 -12.77385 -12.72196 -12.59458 -12.29801 -12.23114 -11.90468 -11.88617 -11.78435 -11.77552 -11.61844 -11.40576 -11.34473 -11.17906 -10.76090 -10.44982 -10.26722 -10.25219 -9.54195 -8.29053 -6.33569 0.38338 1.29594 1.37823 1.39361 1.51426 2.14730 2.36986 2.44824 2.67864 3.06525 3.27869 3.46494 3.49277 3.66571 4.00799 4.01894 4.15245 4.15733 4.20007 4.27874 4.29769 4.44198 4.46504 4.52583 4.59559 4.67502 4.71985 4.77505 4.80714 4.81730 4.84957 4.87675 4.92737 5.00332 5.03035 5.03969 5.09677 5.12435 5.15735 5.25257 5.28872 5.41456 5.44031 5.46604 5.53874 5.54042 5.64462 5.96317 6.24587 6.27463 6.42191 6.71573 6.74589 6.97495 7.31094 8.87605 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002293 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.176296 B =12207.538620 C =12802.223987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.071 3.929 5 H 0.095 0.905 6 C -0.152 4.152 7 C 0.118 3.882 8 H 0.088 0.912 9 N -0.556 5.556 10 C 0.095 3.905 11 C 0.507 3.493 12 O -0.534 6.534 13 C 0.499 3.501 14 O -0.536 6.536 15 N -0.692 5.692 16 C 0.127 3.873 17 C -0.103 4.103 18 C -0.010 4.010 19 C -0.533 4.533 20 H 0.034 0.966 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.951 3.049 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.244 1.244 27 C -0.094 4.094 28 C -0.134 4.134 29 C -0.119 4.119 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.416 0.584 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.266 0.734 48 H 0.046 0.954 49 H 0.036 0.964 50 H 0.064 0.936 51 H 0.058 0.942 52 H 0.084 0.916 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.934 -29.133 11.987 37.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.297 6.297 4 C 0.013 3.987 5 H 0.113 0.887 6 C -0.189 4.189 7 C 0.016 3.984 8 H 0.106 0.894 9 N -0.287 5.287 10 C -0.047 4.047 11 C 0.290 3.710 12 O -0.412 6.412 13 C 0.280 3.720 14 O -0.414 6.414 15 N -0.345 5.345 16 C 0.004 3.996 17 C -0.141 4.141 18 C -0.048 4.048 19 C -0.571 4.571 20 H 0.052 0.948 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.774 3.226 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.168 1.168 27 C -0.095 4.095 28 C -0.191 4.191 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.103 0.897 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.549 -28.919 12.143 37.497 hybrid contribution -0.723 0.641 -0.506 1.090 sum 19.826 -28.278 11.637 36.444 Atomic orbital electron populations 1.21747 0.94127 1.02938 1.02022 1.22620 0.95278 0.83240 1.00882 1.87969 1.20066 1.27194 1.94462 1.23271 0.81751 0.97766 0.95930 0.88734 1.23976 1.04379 0.92227 0.98293 1.22308 0.83651 0.94964 0.97505 0.89432 1.47230 1.18215 1.29627 1.33633 1.22020 0.93612 0.99771 0.89275 1.19854 0.87390 0.81878 0.81895 1.90672 1.55268 1.59479 1.35774 1.20335 0.88266 0.80891 0.82511 1.90726 1.57853 1.59261 1.33567 1.45887 1.16974 1.36979 1.34645 1.21498 0.81689 0.96374 1.00010 1.21512 0.98231 0.96580 0.97826 1.19447 0.94088 0.95206 0.96010 1.21467 0.99902 1.19614 1.16103 0.94776 1.26033 1.01313 0.94437 0.97616 1.70071 1.25556 1.26390 1.37233 0.85650 0.77588 0.80469 0.78917 1.19139 1.21095 1.16779 1.22566 0.97358 0.95516 0.94063 1.21824 0.98328 1.01277 0.97683 1.21510 0.91651 1.02616 1.01834 0.93723 0.89348 0.92581 0.92947 0.91714 0.84721 0.88654 0.88157 0.92236 0.92475 0.74776 0.91260 0.91023 0.91896 0.92023 0.95723 0.95778 0.92498 0.93478 0.94510 0.91764 0.92308 0.89732 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.06 0.68 6.50 71.98 0.47 1.15 16 3 O -0.38 -6.38 7.20 -148.98 -1.07 -7.46 16 4 C 0.07 0.88 3.81 31.18 0.12 1.00 16 5 H 0.09 0.79 7.83 -2.39 -0.02 0.77 16 6 C -0.15 -1.39 6.88 31.18 0.21 -1.18 16 7 C 0.12 1.96 3.64 45.51 0.17 2.13 16 8 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 9 N -0.56 -12.22 2.34 -821.23 -1.92 -14.14 16 10 C 0.09 1.87 7.66 127.77 0.98 2.85 16 11 C 0.51 14.06 5.70 87.27 0.50 14.55 16 12 O -0.53 -16.15 13.26 -3.27 -0.04 -16.19 16 13 C 0.50 15.20 7.81 87.27 0.68 15.88 16 14 O -0.54 -17.66 13.26 -3.24 -0.04 -17.71 16 15 N -0.69 -20.77 5.55 -464.41 -2.58 -23.35 16 16 C 0.13 4.12 5.67 86.38 0.49 4.61 16 17 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 18 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 19 C -0.53 -30.77 9.66 25.60 0.25 -30.53 16 20 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 21 C 0.00 0.16 5.47 84.65 0.46 0.62 16 22 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 23 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.24 -10.57 6.54 99.48 0.65 -9.91 16 27 C -0.09 -1.50 1.34 -51.66 -0.07 -1.57 16 28 C -0.13 -3.10 7.22 71.98 0.52 -2.58 16 29 C -0.12 -1.31 9.07 71.98 0.65 -0.66 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.13 0.46 7.64 -2.39 -0.02 0.44 16 36 H 0.10 0.83 5.36 -2.39 -0.01 0.82 16 37 H 0.10 1.34 5.05 -2.38 -0.01 1.33 16 38 H 0.06 1.31 7.06 -2.39 -0.02 1.29 16 39 H 0.06 1.35 7.20 -2.39 -0.02 1.33 16 40 H 0.42 11.73 7.96 -92.71 -0.74 10.99 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 46 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 47 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 48 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.04 1.00 5.71 -2.38 -0.01 0.99 16 50 H 0.06 1.76 5.61 -2.39 -0.01 1.74 16 51 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.08 0.49 7.34 -2.39 -0.02 0.47 16 53 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -72.34 407.42 3.08 -69.26 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.11 Total: 22.29 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.45 Total: 0.91 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.20 Total: -97.45 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.16 Total: -41.36 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -72.34 3.08 -69.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343154675.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.589 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds