Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47144 * 2 1 4 4 C 1.42904 * 113.99874 * 179.97438 * 3 2 1 5 5 C 1.53773 * 113.61399 * 209.99901 * 4 3 2 6 6 C 1.53788 * 87.08104 * 220.02059 * 5 4 3 7 7 C 1.52996 * 113.61121 * 270.80098 * 6 5 4 8 8 N 1.46504 * 109.46839 * 180.34232 * 7 6 5 9 9 C 1.34774 * 119.99729 * 174.87747 * 8 7 6 10 10 O 1.21280 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99956 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.47316 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47058 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99926 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99958 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47309 * 89.99963 * 17 15 13 19 19 H 1.48495 * 109.47185 * 210.00299 * 17 15 13 20 20 H 1.48510 * 109.46930 * 330.00043 * 17 15 13 21 21 N 1.46895 * 113.61216 * 139.98316 * 6 5 4 22 22 C 1.47015 * 111.00422 * 74.02811 * 21 6 5 23 23 C 1.53094 * 109.25919 * 177.60530 * 22 21 6 24 24 O 1.43020 * 109.26172 * 56.84573 * 23 22 21 25 25 C 1.43020 * 113.73554 * 301.33244 * 24 23 22 26 26 C 1.47013 * 111.00338 * 310.38452 * 21 6 5 27 27 C 1.53778 * 87.17172 * 25.39007 * 6 5 4 28 28 H 1.08990 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47014 * 300.00690 * 1 2 3 30 30 H 1.09004 * 109.46431 * 60.00304 * 1 2 3 31 31 H 1.08997 * 109.47014 * 239.99310 * 2 1 3 32 32 H 1.09004 * 109.46431 * 119.99696 * 2 1 3 33 33 H 1.08998 * 112.90895 * 341.25316 * 4 3 2 34 34 H 1.08998 * 113.61799 * 105.47478 * 5 4 3 35 35 H 1.09003 * 113.61568 * 334.56887 * 5 4 3 36 36 H 1.09007 * 109.47402 * 300.34108 * 7 6 5 37 37 H 1.09000 * 109.47423 * 60.34057 * 7 6 5 38 38 H 0.96999 * 120.00075 * 354.88133 * 8 7 6 39 39 H 1.09003 * 109.47474 * 300.00912 * 11 9 8 40 40 H 1.09005 * 109.46946 * 60.00613 * 11 9 8 41 41 H 1.08993 * 109.47184 * 300.00143 * 12 11 9 42 42 H 1.08995 * 109.46798 * 60.00430 * 12 11 9 43 43 H 0.96999 * 120.00007 * 179.97438 * 16 15 13 44 44 H 1.08995 * 109.50428 * 57.66637 * 22 21 6 45 45 H 1.09002 * 109.53651 * 297.55730 * 22 21 6 46 46 H 1.09000 * 109.50715 * 176.78423 * 23 22 21 47 47 H 1.09003 * 109.50640 * 296.91324 * 23 22 21 48 48 H 1.09009 * 109.50423 * 298.73248 * 25 24 23 49 49 H 1.09001 * 109.50489 * 178.60790 * 25 24 23 50 50 H 1.09004 * 109.50571 * 302.33591 * 26 21 6 51 51 H 1.09004 * 109.50274 * 62.46049 * 26 21 6 52 52 H 1.08999 * 113.61274 * 89.15881 * 27 6 5 53 53 H 1.08994 * 113.61344 * 220.05991 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.9484 2.7252 0.7051 6 6 4.9901 2.8312 -0.4213 7 6 6.2880 2.0757 -0.1288 8 7 7.2142 2.2434 -1.2514 9 6 8.4658 1.7499 -1.1718 10 8 8.8252 1.1666 -0.1711 11 6 9.4184 1.9218 -2.3268 12 6 10.7610 1.2745 -1.9813 13 6 11.7138 1.4470 -3.1361 14 1 11.3939 1.9668 -4.0272 15 6 12.9943 0.9423 -3.0547 16 7 13.3840 0.3098 -1.9695 17 14 14.1756 1.1567 -4.4858 18 1 14.9311 2.4241 -4.3184 19 1 15.1248 0.0153 -4.5194 20 1 13.4097 1.2012 -5.7574 21 7 5.2220 4.2071 -0.8807 22 6 6.0089 4.9654 0.1027 23 6 6.2776 6.3710 -0.4413 24 8 5.0322 7.0058 -0.7438 25 6 4.2404 6.2944 -1.6989 26 6 3.9511 4.8880 -1.1677 27 6 4.0051 2.0452 -1.3026 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9289 0.5458 0.3236 34 1 4.3837 2.5320 1.6855 35 1 3.2299 3.5449 0.7139 36 1 6.7423 2.4720 0.7794 37 1 6.0693 1.0166 0.0068 38 1 6.9267 2.7097 -2.0519 39 1 9.0031 1.4448 -3.2145 40 1 9.5662 2.9843 -2.5208 41 1 11.1765 1.7512 -1.0936 42 1 10.6129 0.2122 -1.7876 43 1 14.2847 -0.0457 -1.9124 44 1 6.9563 4.4568 0.2808 45 1 5.4528 5.0370 1.0374 46 1 6.8115 6.9554 0.3080 47 1 6.8802 6.3017 -1.3470 48 1 4.7838 6.2229 -2.6412 49 1 3.3009 6.8234 -1.8591 50 1 3.3964 4.3229 -1.9168 51 1 3.3614 4.9584 -0.2536 52 1 3.3021 2.6786 -1.8437 53 1 4.4859 1.3037 -1.9406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360474686.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -128.212798 kcal Electronic energy + Delta-G solvation = -30998.853142 eV Core-core repulsion = 26870.331159 eV Total energy + Delta-G solvation = -4128.521983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09690 -40.40712 -39.66864 -38.04567 -35.60129 -35.23667 -34.89845 -33.00292 -32.16265 -31.82114 -29.20819 -27.93594 -27.11684 -26.76227 -24.82648 -23.90580 -23.56477 -23.04293 -21.86140 -21.09411 -19.45001 -18.77709 -18.63189 -17.43776 -17.22423 -17.12292 -16.82229 -16.64431 -16.51125 -16.37041 -16.19298 -15.91883 -15.82868 -15.52585 -15.09348 -14.78379 -14.50572 -14.31854 -14.13356 -13.92257 -13.71053 -13.48110 -13.39579 -13.20300 -13.07424 -12.79893 -12.69318 -12.59342 -12.45233 -12.27317 -12.18851 -12.01675 -11.89380 -11.69619 -11.62056 -11.53953 -11.37467 -11.28584 -10.71459 -10.64204 -10.55607 -10.42206 -10.01480 -9.37033 -8.16723 -6.30388 1.42849 1.45450 1.56334 1.76473 2.17996 2.43960 2.56081 2.83221 2.97520 3.16264 3.31127 3.47046 3.51280 3.67792 3.92744 4.00661 4.04364 4.13865 4.17605 4.18370 4.26046 4.30844 4.36732 4.46665 4.48889 4.50448 4.54965 4.60069 4.64133 4.64931 4.73091 4.74038 4.80641 4.85046 4.91135 4.93726 4.99347 5.03122 5.06714 5.10391 5.12972 5.27630 5.46837 5.53866 5.66161 5.87380 5.90143 5.93283 6.19740 6.19855 6.28214 6.68727 6.88291 7.38805 7.41002 8.95871 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.002571 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.498423 B =10887.935450 C =12677.029938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.387 6.387 4 C 0.067 3.933 5 C -0.158 4.158 6 C 0.090 3.910 7 C 0.149 3.851 8 N -0.704 5.704 9 C 0.513 3.487 10 O -0.591 6.591 11 C -0.118 4.118 12 C 0.044 3.956 13 C -0.542 4.542 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.973 3.027 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.256 1.256 21 N -0.515 5.515 22 C 0.021 3.979 23 C 0.065 3.935 24 O -0.403 6.403 25 C 0.061 3.939 26 C 0.016 3.984 27 C -0.137 4.137 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.418 0.582 39 H 0.102 0.898 40 H 0.101 0.899 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.046 0.954 52 H 0.107 0.893 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.048 8.279 1.078 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.307 6.307 4 C 0.009 3.991 5 C -0.198 4.198 6 C -0.001 4.001 7 C 0.025 3.975 8 N -0.357 5.357 9 C 0.301 3.699 10 O -0.472 6.472 11 C -0.158 4.158 12 C 0.006 3.994 13 C -0.579 4.579 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.179 1.179 21 N -0.239 5.239 22 C -0.107 4.107 23 C -0.012 4.012 24 O -0.322 6.322 25 C -0.016 4.016 26 C -0.112 4.112 27 C -0.175 4.175 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.256 0.744 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.132 0.868 50 H 0.122 0.878 51 H 0.064 0.936 52 H 0.125 0.875 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.586 8.109 1.497 29.752 hybrid contribution 0.729 -0.551 0.296 0.961 sum -27.857 7.558 1.793 28.920 Atomic orbital electron populations 1.21753 0.92836 1.03258 1.02746 1.22696 0.96402 0.83167 1.00621 1.87909 1.20513 1.27593 1.94649 1.23548 0.81228 0.97758 0.96583 1.23861 0.98152 0.98944 0.98830 1.22201 0.92148 0.89294 0.96449 1.21026 0.87540 0.99201 0.89747 1.45682 1.11226 1.58549 1.20275 1.21256 0.82866 0.76968 0.88818 1.90656 1.77817 1.44038 1.34656 1.21602 0.94479 1.03601 0.96078 1.18672 0.91492 0.94045 0.95198 1.21720 0.97644 1.36206 1.02369 0.90688 1.26129 1.00669 0.94723 0.98964 1.70176 1.19160 1.38638 1.29800 0.85336 0.78146 0.77661 0.79194 1.19739 1.21216 1.17929 1.62102 1.18453 1.00585 1.42790 1.22702 0.98798 0.95298 0.93888 1.22693 0.85841 0.91761 1.00899 1.87968 1.31859 1.49521 1.62874 1.22831 0.96356 0.90891 0.91491 1.22977 0.90825 0.95851 1.01514 1.23760 0.97159 0.99433 0.97152 0.89545 0.92290 0.92048 0.92779 0.92979 0.89005 0.90686 0.88141 0.92521 0.91444 0.74429 0.88010 0.88035 0.99996 0.99955 0.92901 0.90473 0.94001 0.87718 0.92146 0.91943 0.86790 0.87785 0.93628 0.87471 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.05 0.64 6.50 71.98 0.47 1.10 16 3 O -0.39 -6.65 10.36 -148.98 -1.54 -8.20 16 4 C 0.07 1.06 3.96 31.18 0.12 1.19 16 5 C -0.16 -2.54 6.47 31.12 0.20 -2.34 16 6 C 0.09 1.51 0.70 4.05 0.00 1.52 16 7 C 0.15 3.47 4.21 86.38 0.36 3.83 16 8 N -0.70 -18.60 5.31 -463.06 -2.46 -21.06 16 9 C 0.51 19.46 7.83 87.66 0.69 20.15 16 10 O -0.59 -28.57 15.98 -3.03 -0.05 -28.62 16 11 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 12 C 0.04 2.43 4.26 29.85 0.13 2.56 16 13 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 14 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 16 N -0.94 -59.66 13.29 21.45 0.28 -59.37 16 17 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 N -0.52 -8.53 4.16 -842.77 -3.50 -12.03 16 22 C 0.02 0.40 5.23 86.31 0.45 0.85 16 23 C 0.06 1.17 7.01 72.01 0.50 1.68 16 24 O -0.40 -7.83 10.83 -148.98 -1.61 -9.44 16 25 C 0.06 0.86 7.01 72.01 0.50 1.36 16 26 C 0.02 0.22 4.85 86.31 0.42 0.63 16 27 C -0.14 -2.05 6.91 31.18 0.22 -1.83 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 1.43 7.39 -2.39 -0.02 1.41 16 34 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.10 1.63 5.86 -2.39 -0.01 1.61 16 36 H 0.06 1.50 7.28 -2.38 -0.02 1.48 16 37 H 0.07 1.63 7.35 -2.39 -0.02 1.61 16 38 H 0.42 9.08 8.11 -92.71 -0.75 8.33 16 39 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.10 3.60 8.14 -2.38 -0.02 3.59 16 41 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 42 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.08 1.69 6.63 -2.39 -0.02 1.67 16 45 H 0.04 0.79 7.85 -2.39 -0.02 0.78 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.10 1.19 5.84 -2.38 -0.01 1.17 16 51 H 0.05 0.68 6.12 -2.38 -0.01 0.67 16 52 H 0.11 1.45 5.71 -2.39 -0.01 1.44 16 53 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -76.06 412.35 -1.05 -77.10 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.14 Total: 20.50 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.67 Total: -5.31 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -5.68 Total: -92.46 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -3.20 Total: -46.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -76.06 -1.05 -77.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360474686.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.110 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds