Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47427 * 2 1 4 4 C 1.37105 * 119.99948 * 264.14073 * 3 2 1 5 5 H 1.07994 * 120.00398 * 139.08913 * 4 3 2 6 6 C 1.38950 * 119.99609 * 319.09002 * 4 3 2 7 7 N 1.31408 * 120.00143 * 171.74182 * 6 4 3 8 8 Si 1.86805 * 120.00174 * 351.73803 * 6 4 3 9 9 H 1.48492 * 109.47118 * 90.25472 * 8 6 4 10 10 H 1.48502 * 109.47209 * 210.25332 * 8 6 4 11 11 H 1.48498 * 109.47040 * 330.25075 * 8 6 4 12 12 C 1.34777 * 120.00116 * 84.13699 * 3 2 1 13 13 O 1.21285 * 120.00238 * 5.66244 * 12 3 2 14 14 C 1.50704 * 119.99784 * 185.65916 * 12 3 2 15 15 C 1.53008 * 109.49533 * 66.41845 * 14 12 3 16 16 C 1.53034 * 109.52245 * 186.49678 * 14 12 3 17 17 C 1.53036 * 109.53792 * 58.60361 * 16 14 12 18 18 C 1.52765 * 109.38380 * 61.23990 * 17 16 14 19 19 N 1.46925 * 109.00896 * 305.59000 * 18 17 16 20 20 C 1.34776 * 120.63450 * 233.58493 * 19 18 17 21 21 O 1.21505 * 120.00445 * 183.16498 * 20 19 18 22 22 O 1.34637 * 119.99556 * 2.88878 * 20 19 18 23 23 C 1.45201 * 117.00041 * 181.58037 * 22 20 19 24 24 C 1.52998 * 109.47120 * 57.40767 * 23 22 20 25 25 C 1.52992 * 109.47253 * 177.41418 * 23 22 20 26 26 C 1.53001 * 109.46792 * 297.41069 * 23 22 20 27 27 C 1.46931 * 118.73819 * 53.30277 * 19 18 17 28 28 H 1.08998 * 109.46922 * 64.95467 * 1 2 3 29 29 H 1.08993 * 109.47650 * 184.95646 * 1 2 3 30 30 H 1.08997 * 109.47112 * 304.96148 * 1 2 3 31 31 H 1.09004 * 109.47115 * 239.99528 * 2 1 3 32 32 H 1.09001 * 109.46739 * 119.99894 * 2 1 3 33 33 H 0.96998 * 120.00799 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47308 * 312.41420 * 15 14 12 35 35 H 1.09004 * 109.46875 * 72.41324 * 15 14 12 36 36 H 1.09000 * 109.46721 * 192.41192 * 15 14 12 37 37 H 1.08994 * 109.46208 * 178.62460 * 16 14 12 38 38 H 1.09008 * 109.46483 * 298.58577 * 16 14 12 39 39 H 1.09003 * 109.49966 * 181.31608 * 17 16 14 40 40 H 1.09001 * 109.50290 * 301.41738 * 17 16 14 41 41 H 1.08996 * 109.51175 * 185.70362 * 18 17 16 42 42 H 1.09004 * 109.43058 * 65.42323 * 18 17 16 43 43 H 1.09001 * 109.46692 * 60.00728 * 24 23 22 44 44 H 1.09000 * 109.46939 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.47220 * 300.00344 * 24 23 22 46 46 H 1.09003 * 109.47481 * 59.99668 * 25 23 22 47 47 H 1.09000 * 109.47526 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47334 * 299.99746 * 25 23 22 49 49 H 1.09004 * 109.47424 * 61.61845 * 26 23 22 50 50 H 1.09009 * 109.47272 * 181.61669 * 26 23 22 51 51 H 1.09000 * 109.47440 * 301.61369 * 26 23 22 52 52 H 1.08999 * 109.58351 * 66.43524 * 27 19 18 53 53 H 1.08997 * 109.58990 * 186.86046 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3612 1.9871 -1.1812 5 1 2.0919 3.0179 -1.3574 6 6 3.0552 1.2747 -2.1515 7 7 3.2422 1.7975 -3.3425 8 14 3.7225 -0.4263 -1.7630 9 1 2.7012 -1.4486 -2.1050 10 1 4.9522 -0.6695 -2.5593 11 1 4.0446 -0.5131 -0.3160 12 6 2.1306 2.0563 1.1611 13 8 1.9263 1.4901 2.2140 14 6 2.5102 3.5147 1.1510 15 6 1.3896 4.3295 0.5019 16 6 2.7262 3.9969 2.5873 17 6 3.8243 3.1606 3.2482 18 6 5.1307 3.3383 2.4765 19 7 4.8978 3.0190 1.0614 20 6 5.6682 2.1140 0.4258 21 8 5.5030 1.9007 -0.7590 22 8 6.6244 1.4503 1.1024 23 6 7.4393 0.5163 0.3462 24 6 8.1195 1.2527 -0.8096 25 6 8.5045 -0.0891 1.2626 26 6 6.5525 -0.5990 -0.2111 27 6 3.8051 3.7005 0.3540 28 1 -0.3633 0.4350 -0.9310 29 1 -0.3634 -1.0237 0.0888 30 1 -0.3633 0.5889 0.8422 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.7270 1.3004 -4.0199 34 1 1.0862 3.8522 -0.4299 35 1 0.5371 4.3789 1.1793 36 1 1.7473 5.3379 0.2939 37 1 3.0244 5.0451 2.5774 38 1 1.7990 3.8886 3.1501 39 1 3.9614 3.4890 4.2785 40 1 3.5379 2.1090 3.2362 41 1 5.8876 2.6674 2.8827 42 1 5.4680 4.3708 2.5674 43 1 8.7514 2.0472 -0.4125 44 1 8.7316 0.5516 -1.3770 45 1 7.3607 1.6839 -1.4624 46 1 8.0199 -0.6137 2.0860 47 1 9.1160 -0.7906 0.6951 48 1 9.1363 0.7054 1.6597 49 1 5.8117 -0.1709 -0.8865 50 1 7.1684 -1.3156 -0.7546 51 1 6.0457 -1.1051 0.6105 52 1 4.0321 4.7632 0.2683 53 1 3.6877 3.2686 -0.6398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367043749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -98.931510 kcal Electronic energy + Delta-G solvation = -35198.873359 eV Core-core repulsion = 31071.621108 eV Total energy + Delta-G solvation = -4127.252251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.13143 -41.18727 -38.89657 -37.59423 -36.81937 -35.40736 -34.36431 -33.95419 -32.91790 -31.31896 -28.62033 -28.33317 -27.80998 -26.92833 -26.49407 -25.06526 -23.37797 -23.00292 -22.04945 -20.43929 -20.05975 -18.89136 -18.51695 -17.86840 -17.39984 -17.31643 -16.95321 -16.30774 -16.17681 -15.75968 -15.64923 -15.32591 -15.06350 -14.82863 -14.76193 -14.40918 -14.39953 -14.30280 -13.82035 -13.80672 -13.40320 -13.31496 -13.25659 -13.14393 -13.08425 -12.97155 -12.83645 -12.71254 -12.67856 -12.51053 -12.46849 -12.21019 -11.96477 -11.94717 -11.66052 -11.56166 -11.48478 -11.33810 -11.14188 -10.82787 -10.68769 -10.17499 -9.58985 -9.38980 -8.34007 -5.98216 1.09678 1.30344 1.32125 1.36260 1.98159 2.06651 2.29111 2.70223 3.01133 3.15532 3.71749 3.73914 3.80762 3.89430 3.90824 3.99103 4.03239 4.21278 4.32429 4.36972 4.38368 4.40402 4.45682 4.49795 4.61602 4.66154 4.67355 4.75679 4.76295 4.79524 4.81712 4.87414 4.88221 4.93442 4.97845 5.04054 5.10738 5.13580 5.18717 5.19895 5.24921 5.33268 5.36644 5.45481 5.58528 5.60980 5.69281 5.77083 6.20179 6.37095 6.57090 7.11520 7.54099 7.55267 7.89210 8.75943 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.007576 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.266764 B = 3695.045049 C = 4949.481363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 N -0.474 5.474 4 C -0.326 4.326 5 H 0.112 0.888 6 C 0.065 3.935 7 N -0.894 5.894 8 Si 0.960 3.040 9 H -0.306 1.306 10 H -0.308 1.308 11 H -0.281 1.281 12 C 0.496 3.504 13 O -0.613 6.613 14 C -0.074 4.074 15 C -0.136 4.136 16 C -0.086 4.086 17 C -0.141 4.141 18 C 0.111 3.889 19 N -0.591 5.591 20 C 0.634 3.366 21 O -0.562 6.562 22 O -0.371 6.371 23 C 0.128 3.872 24 C -0.177 4.177 25 C -0.128 4.128 26 C -0.200 4.200 27 C 0.109 3.891 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.269 0.731 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.049 0.951 52 H 0.083 0.917 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.705 2.936 9.709 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 N -0.195 5.195 4 C -0.452 4.452 5 H 0.129 0.871 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.798 3.202 9 H -0.237 1.237 10 H -0.238 1.238 11 H -0.207 1.207 12 C 0.286 3.714 13 O -0.499 6.499 14 C -0.078 4.078 15 C -0.194 4.194 16 C -0.123 4.123 17 C -0.179 4.179 18 C -0.010 4.010 19 N -0.331 5.331 20 C 0.389 3.611 21 O -0.451 6.451 22 O -0.287 6.287 23 C 0.092 3.908 24 C -0.234 4.234 25 C -0.185 4.185 26 C -0.257 4.257 27 C -0.012 4.012 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.702 2.510 9.641 12.007 hybrid contribution 0.158 -1.376 -0.528 1.482 sum 6.861 1.134 9.113 11.463 Atomic orbital electron populations 1.21901 0.93863 1.02463 1.01914 1.21629 0.96582 0.85968 0.99296 1.43831 1.57781 1.11343 1.06530 1.19002 1.34926 0.99393 0.91907 0.87130 1.25401 0.94215 0.99541 0.94810 1.69637 1.40531 1.39285 1.03750 0.86070 0.74838 0.81801 0.77514 1.23668 1.23818 1.20711 1.20755 0.78158 0.90137 0.82328 1.90447 1.56346 1.71456 1.31641 1.20922 0.96817 0.91649 0.98424 1.21849 0.96600 1.00098 1.00849 1.21358 0.99138 0.99742 0.92089 1.21980 0.94464 1.01610 0.99834 1.21790 0.98051 1.02243 0.78957 1.47004 1.32652 1.40730 1.12674 1.18313 0.79570 0.79304 0.83946 1.90902 1.71383 1.67736 1.15041 1.86238 1.45231 1.54135 1.43079 1.22263 0.89410 0.86617 0.92533 1.22455 1.01176 1.01560 0.98245 1.21833 0.96062 1.01535 0.99091 1.22974 1.01575 0.99401 1.01772 1.22464 0.82112 0.96882 0.99755 0.92322 0.90333 0.92886 0.93468 0.92971 0.92173 0.92384 0.91720 0.89492 0.88737 0.91923 0.88507 0.92919 0.90002 0.88853 0.90848 0.89569 0.92455 0.91739 0.88045 0.90074 0.92331 0.89361 0.93219 0.89886 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 10.19 71.98 0.73 -4.80 16 2 C 0.09 4.10 4.43 86.38 0.38 4.48 16 3 N -0.47 -22.75 2.22 -635.54 -1.41 -24.16 16 4 C -0.33 -16.60 5.98 84.04 0.50 -16.09 16 5 H 0.11 5.71 4.58 -2.91 -0.01 5.69 16 6 C 0.06 3.55 4.30 84.93 0.37 3.91 16 7 N -0.89 -51.21 13.96 21.66 0.30 -50.91 16 8 Si 0.96 49.84 18.84 68.60 1.29 51.13 16 9 H -0.31 -15.48 6.70 99.48 0.67 -14.81 16 10 H -0.31 -16.31 6.83 99.48 0.68 -15.63 16 11 H -0.28 -14.96 5.86 99.48 0.58 -14.37 16 12 C 0.50 22.25 5.73 87.66 0.50 22.75 16 13 O -0.61 -29.58 13.50 -3.05 -0.04 -29.62 16 14 C -0.07 -2.68 0.50 -52.85 -0.03 -2.71 16 15 C -0.14 -4.35 8.25 71.98 0.59 -3.76 16 16 C -0.09 -2.51 4.30 30.62 0.13 -2.38 16 17 C -0.14 -4.22 5.75 30.53 0.18 -4.04 16 18 C 0.11 3.25 6.43 86.22 0.55 3.81 16 19 N -0.59 -22.26 2.69 -950.09 -2.55 -24.82 16 20 C 0.63 26.89 7.74 129.79 1.00 27.89 16 21 O -0.56 -27.22 7.98 19.83 0.16 -27.07 16 22 O -0.37 -13.89 8.52 -55.47 -0.47 -14.36 16 23 C 0.13 4.17 1.13 -10.80 -0.01 4.16 16 24 C -0.18 -5.50 8.33 71.98 0.60 -4.90 16 25 C -0.13 -2.86 8.85 71.98 0.64 -2.22 16 26 C -0.20 -7.57 7.18 71.98 0.52 -7.05 16 27 C 0.11 4.14 4.72 86.36 0.41 4.55 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.33 2.86 -2.38 -0.01 2.32 16 32 H 0.05 2.49 7.53 -2.39 -0.02 2.47 16 33 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.06 2.18 5.35 -2.39 -0.01 2.17 16 35 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 36 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.89 8.07 -2.38 -0.02 1.87 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.07 5.62 -2.39 -0.01 2.05 16 41 H 0.08 2.37 6.92 -2.39 -0.02 2.36 16 42 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.06 2.27 5.73 -2.39 -0.01 2.26 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 2.69 1.51 -2.39 0.00 2.69 16 50 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 51 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 52 H 0.08 2.67 8.09 -2.39 -0.02 2.65 16 53 H 0.13 6.08 3.10 -2.39 -0.01 6.07 16 Total: -1.00 -68.43 370.47 5.07 -63.36 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.72 Total: 32.85 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.07 Total: 23.59 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -3.66 Total: -99.89 kcal Atomic # 8 Polarization: -70.69 SS G_CDS: -0.36 Total: -71.05 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.29 Total: 51.13 kcal Total: -68.43 5.07 -63.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367043749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.570 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds