Wall clock time and date at job start Sat Apr 11 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47668 * 2 1 4 4 C 1.42900 * 114.00437 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84785 * 341.20261 * 4 3 2 6 6 C 1.53778 * 113.68704 * 112.46473 * 4 3 2 7 7 C 1.53792 * 87.07997 * 139.99795 * 6 4 3 8 8 O 1.42898 * 113.68783 * 220.01036 * 7 6 4 9 9 C 1.52992 * 113.61521 * 89.11615 * 7 6 4 10 10 N 1.46504 * 109.47364 * 82.50391 * 9 7 6 11 11 C 1.34772 * 119.99823 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00350 * 4.99807 * 11 10 9 13 13 N 1.34778 * 119.99727 * 184.99863 * 11 10 9 14 14 C 1.46503 * 120.00058 * 184.99731 * 13 11 10 15 15 C 1.52998 * 109.46931 * 184.76666 * 14 13 11 16 16 C 1.50699 * 115.55551 * 294.79228 * 15 14 13 17 17 H 1.07993 * 119.99981 * 95.08373 * 16 15 14 18 18 C 1.37882 * 119.99554 * 275.09100 * 16 15 14 19 19 N 1.31514 * 119.99533 * 174.83522 * 18 16 15 20 20 Si 1.86793 * 120.00349 * 355.10705 * 18 16 15 21 21 H 1.48496 * 109.47160 * 274.85242 * 20 18 16 22 22 H 1.48500 * 109.47108 * 34.85365 * 20 18 16 23 23 H 1.48503 * 109.47161 * 154.85596 * 20 18 16 24 24 C 1.53002 * 117.49533 * 80.46660 * 15 14 13 25 25 C 1.53004 * 117.49495 * 149.11980 * 15 14 13 26 26 C 1.53777 * 113.61718 * 210.00108 * 4 3 2 27 27 C 1.53007 * 113.61057 * 105.38945 * 26 4 3 28 28 C 1.52998 * 113.61734 * 334.48613 * 26 4 3 29 29 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46769 * 300.00198 * 1 2 3 31 31 H 1.08998 * 109.47113 * 59.99063 * 1 2 3 32 32 H 1.09002 * 109.46769 * 239.99802 * 2 1 3 33 33 H 1.09007 * 109.47276 * 120.00801 * 2 1 3 34 34 H 1.08993 * 113.62094 * 25.45086 * 6 4 3 35 35 H 1.09004 * 113.61700 * 254.53982 * 6 4 3 36 36 H 0.96702 * 113.99655 * 279.05784 * 8 7 6 37 37 H 1.09007 * 109.47207 * 322.50262 * 9 7 6 38 38 H 1.09005 * 109.47146 * 202.50772 * 9 7 6 39 39 H 0.96998 * 119.99528 * 0.02562 * 10 9 7 40 40 H 0.97004 * 119.99839 * 4.98989 * 13 11 10 41 41 H 1.09006 * 109.46984 * 64.76945 * 14 13 11 42 42 H 1.08992 * 109.46935 * 304.77288 * 14 13 11 43 43 H 0.96996 * 120.00201 * 179.97438 * 19 18 16 44 44 H 1.09005 * 117.49477 * 214.99739 * 24 15 14 45 45 H 1.08998 * 117.49833 * 0.02562 * 24 15 14 46 46 H 1.09002 * 117.49725 * 359.97438 * 25 15 14 47 47 H 1.09004 * 117.49698 * 144.99849 * 25 15 14 48 48 H 1.09000 * 109.46890 * 157.50055 * 27 26 4 49 49 H 1.09002 * 109.47092 * 277.49335 * 27 26 4 50 50 H 1.08993 * 109.47185 * 37.49805 * 27 26 4 51 51 H 1.08996 * 109.46858 * 322.50690 * 28 26 4 52 52 H 1.08999 * 109.47048 * 82.49784 * 28 26 4 53 53 H 1.08999 * 109.47267 * 202.50257 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9278 0.5455 0.3246 6 6 4.0049 2.0450 -1.3006 7 6 4.9916 2.8298 -0.4200 8 8 5.2200 4.1681 -0.8660 9 6 6.2878 2.0720 -0.1265 10 7 7.2124 2.2318 -1.2516 11 6 8.4263 1.6475 -1.2145 12 8 8.7200 0.9140 -0.2903 13 7 9.3147 1.8762 -2.2019 14 6 10.5912 1.1573 -2.2198 15 6 11.4566 1.6833 -3.3667 16 6 10.9244 1.4267 -4.7531 17 1 10.3414 2.1837 -5.2563 18 6 11.1819 0.2254 -5.3788 19 7 10.6341 -0.0392 -6.5448 20 14 12.3025 -1.0294 -4.5671 21 1 13.7160 -0.7194 -4.9001 22 1 12.1182 -0.9782 -3.0944 23 1 11.9641 -2.3883 -5.0613 24 6 12.2214 2.9877 -3.1337 25 6 12.9744 1.6558 -3.1763 26 6 3.9485 2.7251 0.7051 27 6 4.5576 2.4539 2.0823 28 6 2.9408 3.8764 0.7159 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.3025 2.6792 -1.8414 35 1 4.4845 1.3028 -1.9388 36 1 5.8578 4.2380 -1.5894 37 1 6.0662 1.0140 0.0142 38 1 6.7450 2.4709 0.7790 39 1 6.9512 2.7589 -2.0229 40 1 9.1089 2.5166 -2.9007 41 1 10.4066 0.0926 -2.3626 42 1 11.1088 1.3125 -1.2732 43 1 10.8154 -0.8842 -6.9853 44 1 12.3397 3.6604 -3.9833 45 1 12.1084 3.4710 -2.1633 46 1 13.3564 1.2634 -2.2338 47 1 13.5881 1.4521 -4.0538 48 1 5.2384 3.2638 2.3443 49 1 3.7627 2.3928 2.8255 50 1 5.1056 1.5121 2.0580 51 1 2.3987 3.8935 -0.2296 52 1 2.2367 3.7353 1.5358 53 1 3.4692 4.8204 0.8489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431116112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:37 Heat of formation + Delta-G solvation = -105.050097 kcal Electronic energy + Delta-G solvation = -30854.541983 eV Core-core repulsion = 26727.024410 eV Total energy + Delta-G solvation = -4127.517573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04234 -40.80102 -38.85006 -38.30038 -36.10567 -35.24355 -34.95047 -34.20733 -32.06075 -31.41620 -29.50354 -28.34885 -27.57816 -26.45780 -24.17897 -23.54315 -23.43871 -23.26331 -21.88615 -21.08977 -19.71386 -19.42444 -18.56070 -17.95292 -17.29263 -17.09481 -16.97945 -16.57073 -16.47123 -16.27134 -15.81187 -15.52179 -15.18673 -15.06947 -14.81118 -14.71281 -14.65421 -14.21385 -14.13861 -13.81293 -13.66681 -13.35440 -13.33878 -13.19165 -13.08225 -12.96810 -12.85841 -12.67324 -12.46336 -12.17966 -12.16264 -11.98968 -11.83693 -11.61805 -11.55761 -11.48286 -11.27180 -11.01413 -10.78700 -10.65286 -10.36819 -10.32355 -10.31091 -9.67099 -8.29524 -6.35229 1.35333 1.40923 1.50042 1.67522 2.16779 2.37458 2.59236 3.01794 3.08963 3.14456 3.27024 3.41433 3.43186 3.58759 3.74762 4.00657 4.04135 4.17305 4.23124 4.31180 4.36784 4.37226 4.43411 4.49917 4.51588 4.57563 4.60141 4.66220 4.79999 4.80131 4.83228 4.87472 4.88087 4.95130 5.02414 5.04467 5.09684 5.10775 5.12053 5.27359 5.29719 5.32101 5.44791 5.49565 5.49957 5.61933 5.70945 6.00321 6.29638 6.29693 6.65919 6.73061 7.12308 7.35384 7.59272 8.84735 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002447 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.098386 B =11440.246367 C =12219.992076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.379 6.379 4 C 0.072 3.928 5 H 0.096 0.904 6 C -0.176 4.176 7 C 0.111 3.889 8 O -0.544 6.544 9 C 0.137 3.863 10 N -0.734 5.734 11 C 0.702 3.298 12 O -0.638 6.638 13 N -0.717 5.717 14 C 0.185 3.815 15 C -0.038 4.038 16 C -0.477 4.477 17 H 0.048 0.952 18 C 0.027 3.973 19 N -0.942 5.942 20 Si 0.928 3.072 21 H -0.265 1.265 22 H -0.244 1.244 23 H -0.304 1.304 24 C -0.150 4.150 25 C -0.195 4.195 26 C -0.056 4.056 27 C -0.144 4.144 28 C -0.102 4.102 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.384 0.616 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.406 0.594 40 H 0.408 0.592 41 H 0.031 0.969 42 H 0.055 0.945 43 H 0.264 0.736 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.062 0.938 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 5.268 15.442 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.298 6.298 4 C 0.013 3.987 5 H 0.114 0.886 6 C -0.214 4.214 7 C 0.070 3.930 8 O -0.351 6.351 9 C 0.012 3.988 10 N -0.392 5.392 11 C 0.401 3.599 12 O -0.521 6.521 13 N -0.370 5.370 14 C 0.060 3.940 15 C -0.040 4.040 16 C -0.515 4.515 17 H 0.066 0.934 18 C -0.171 4.171 19 N -0.582 5.582 20 Si 0.754 3.246 21 H -0.190 1.190 22 H -0.168 1.168 23 H -0.232 1.232 24 C -0.188 4.188 25 C -0.232 4.232 26 C -0.057 4.057 27 C -0.201 4.201 28 C -0.160 4.160 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.243 0.757 40 H 0.243 0.757 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.831 4.771 16.600 24.116 hybrid contribution 0.960 -0.823 -1.562 2.009 sum -15.871 3.949 15.038 22.218 Atomic orbital electron populations 1.21742 0.92795 1.03213 1.02757 1.22707 0.96447 0.83289 1.00560 1.87920 1.19997 1.27292 1.94560 1.23611 0.81722 0.97480 0.95851 0.88605 1.24162 0.98949 1.00380 0.97941 1.22467 0.91375 0.82559 0.96641 1.86560 1.66524 1.25206 1.56842 1.21548 0.87867 1.00353 0.88985 1.44784 1.14218 1.57183 1.23061 1.16046 0.80991 0.80377 0.82454 1.90850 1.79598 1.43780 1.37844 1.44890 1.17809 1.46274 1.28021 1.20702 0.82803 0.94082 0.96398 1.19458 0.90323 1.00561 0.93625 1.20340 1.32807 1.00628 0.97719 0.93392 1.25683 0.96727 0.99756 0.94926 1.70014 1.45365 1.25112 1.17699 0.86067 0.80105 0.77538 0.80857 1.19040 1.16774 1.23195 1.22855 1.03759 0.90058 1.02079 1.23048 0.95049 1.03162 1.01982 1.22248 0.93805 0.95750 0.93931 1.21853 1.01223 1.02089 0.94923 1.21158 0.96900 0.95903 1.01999 0.89554 0.91937 0.92405 0.93344 0.92507 0.88389 0.90837 0.76561 0.91159 0.90902 0.75734 0.75659 0.95061 0.92698 0.92715 0.89469 0.88121 0.88456 0.90194 0.91755 0.90930 0.91990 0.92888 0.91885 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.69 6.50 71.98 0.47 1.16 16 3 O -0.38 -7.20 9.45 -148.98 -1.41 -8.61 16 4 C 0.07 1.29 3.37 31.12 0.10 1.40 16 5 H 0.10 1.62 7.20 -2.39 -0.02 1.60 16 6 C -0.18 -3.30 6.96 31.12 0.22 -3.09 16 7 C 0.11 2.07 1.41 -10.27 -0.01 2.06 16 8 O -0.54 -10.16 12.49 -148.98 -1.86 -12.02 16 9 C 0.14 3.04 4.01 86.38 0.35 3.38 16 10 N -0.73 -18.00 5.35 -478.53 -2.56 -20.57 16 11 C 0.70 24.06 8.55 179.06 1.53 25.59 16 12 O -0.64 -26.77 16.33 -3.98 -0.07 -26.84 16 13 N -0.72 -25.15 5.48 -478.54 -2.62 -27.77 16 14 C 0.19 7.46 5.21 86.38 0.45 7.91 16 15 C -0.04 -1.60 0.86 -52.93 -0.05 -1.64 16 16 C -0.48 -24.51 9.19 25.60 0.24 -24.28 16 17 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 18 C 0.03 1.50 5.47 84.66 0.46 1.97 16 19 N -0.94 -56.12 13.96 21.45 0.30 -55.82 16 20 Si 0.93 43.35 24.72 68.60 1.70 45.05 16 21 H -0.27 -11.79 7.08 99.48 0.70 -11.09 16 22 H -0.24 -10.76 6.05 99.48 0.60 -10.16 16 23 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 24 C -0.15 -5.21 9.96 30.62 0.30 -4.91 16 25 C -0.19 -7.32 7.55 30.62 0.23 -7.09 16 26 C -0.06 -1.01 1.30 -51.65 -0.07 -1.07 16 27 C -0.14 -2.30 8.00 71.98 0.58 -1.73 16 28 C -0.10 -1.86 7.92 71.98 0.57 -1.29 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 1.92 7.65 -2.39 -0.02 1.91 16 35 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.38 5.25 7.33 -74.06 -0.54 4.71 16 37 H 0.07 1.66 7.26 -2.38 -0.02 1.65 16 38 H 0.07 1.73 7.34 -2.38 -0.02 1.71 16 39 H 0.41 7.73 7.06 -92.71 -0.65 7.07 16 40 H 0.41 13.10 8.36 -92.71 -0.78 12.32 16 41 H 0.03 1.42 6.92 -2.38 -0.02 1.41 16 42 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 43 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 45 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.08 3.19 7.09 -2.38 -0.02 3.18 16 48 H 0.06 1.05 8.06 -2.39 -0.02 1.03 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 0.98 7.14 -2.39 -0.02 0.97 16 51 H 0.05 1.05 7.18 -2.39 -0.02 1.03 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 1.11 7.84 -2.39 -0.02 1.09 16 Total: -1.00 -67.86 414.93 -1.58 -69.43 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -1.16 Total: 39.82 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.11 Total: -2.68 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.89 Total: -104.16 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -3.33 Total: -47.46 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.70 Total: 45.05 kcal Total: -67.86 -1.58 -69.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431116112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.618 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds