Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42891 * 109.47734 * 2 1 4 4 C 1.42903 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.84798 * 21.69577 * 4 3 2 6 6 C 1.53777 * 113.61640 * 250.49544 * 4 3 2 7 7 C 1.53772 * 87.08113 * 219.93614 * 6 4 3 8 8 O 1.42902 * 113.61410 * 140.06760 * 7 6 4 9 9 C 1.53004 * 113.61547 * 270.88409 * 7 6 4 10 10 N 1.46499 * 109.47297 * 285.49636 * 9 7 6 11 11 C 1.34773 * 120.00364 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99752 * 4.67516 * 11 10 9 13 13 N 1.34772 * 120.00168 * 184.68452 * 11 10 9 14 14 C 1.46500 * 120.00081 * 184.72892 * 13 11 10 15 15 C 1.52998 * 109.47378 * 184.70116 * 14 13 11 16 16 C 1.50704 * 115.54679 * 294.78497 * 15 14 13 17 17 H 1.07999 * 120.00178 * 121.87231 * 16 15 14 18 18 C 1.37881 * 120.00001 * 301.59911 * 16 15 14 19 19 N 1.31521 * 119.99793 * 172.89719 * 18 16 15 20 20 Si 1.86793 * 120.00177 * 352.89509 * 18 16 15 21 21 H 1.48490 * 109.47216 * 94.26236 * 20 18 16 22 22 H 1.48497 * 109.47092 * 214.26621 * 20 18 16 23 23 H 1.48504 * 109.47042 * 334.26135 * 20 18 16 24 24 C 1.52997 * 117.50086 * 80.45513 * 15 14 13 25 25 C 1.52995 * 117.50255 * 149.12050 * 15 14 13 26 26 C 1.53777 * 113.68844 * 152.95971 * 4 3 2 27 27 C 1.53005 * 113.61818 * 25.44576 * 26 4 3 28 28 C 1.53004 * 113.61493 * 254.54134 * 26 4 3 29 29 H 1.08997 * 109.47363 * 59.99403 * 1 2 3 30 30 H 1.08994 * 109.47759 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46847 * 300.00122 * 1 2 3 32 32 H 1.09007 * 109.46569 * 239.99810 * 2 1 3 33 33 H 1.09004 * 109.47027 * 120.00755 * 2 1 3 34 34 H 1.09003 * 113.61111 * 105.38353 * 6 4 3 35 35 H 1.09000 * 113.61622 * 334.48943 * 6 4 3 36 36 H 0.96694 * 114.00210 * 80.86482 * 8 7 6 37 37 H 1.08999 * 109.47250 * 165.49909 * 9 7 6 38 38 H 1.08995 * 109.46973 * 45.49683 * 9 7 6 39 39 H 0.97004 * 119.99998 * 0.02562 * 10 9 7 40 40 H 0.96998 * 120.00461 * 4.71473 * 13 11 10 41 41 H 1.09000 * 109.47642 * 64.69222 * 14 13 11 42 42 H 1.09001 * 109.46769 * 304.69745 * 14 13 11 43 43 H 0.96995 * 119.99905 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.50073 * 214.99906 * 24 15 14 45 45 H 1.08995 * 117.49883 * 0.02998 * 24 15 14 46 46 H 1.09001 * 117.50056 * 359.97091 * 25 15 14 47 47 H 1.09003 * 117.50223 * 144.97416 * 25 15 14 48 48 H 1.09000 * 109.47268 * 157.48932 * 27 26 4 49 49 H 1.08991 * 109.47208 * 277.49794 * 27 26 4 50 50 H 1.09007 * 109.46320 * 37.49894 * 27 26 4 51 51 H 1.08991 * 109.47370 * 322.50548 * 28 26 4 52 52 H 1.09005 * 109.46969 * 82.51049 * 28 26 4 53 53 H 1.09003 * 109.46846 * 202.50469 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.9267 0.5628 -0.3704 6 6 4.0075 1.9777 1.3289 7 6 4.9931 2.8057 0.4877 8 8 5.2233 4.1184 1.0032 9 6 6.2884 2.0629 0.1539 10 7 7.1367 2.0003 1.3467 11 6 8.3358 1.3877 1.2895 12 8 8.7510 0.9620 0.2289 13 7 9.0746 1.2468 2.4078 14 6 10.4211 0.6749 2.3291 15 6 10.9920 0.5182 3.7398 16 6 11.2326 1.8029 4.4901 17 1 10.7485 1.9720 5.4405 18 6 12.0752 2.7600 3.9656 19 7 12.1777 3.9354 4.5467 20 14 13.0712 2.3874 2.4300 21 1 12.3341 2.8670 1.2335 22 1 14.3839 3.0767 2.5120 23 1 13.2874 0.9220 2.3237 24 6 10.5472 -0.7007 4.5506 25 6 11.9674 -0.6352 3.9832 26 6 3.9482 2.7589 -0.6396 27 6 2.9413 3.9099 -0.5901 28 6 4.5550 2.5578 -2.0297 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 4.4874 1.2036 1.9277 35 1 3.3063 2.5839 1.9024 36 1 5.8616 4.1497 1.7289 37 1 6.8162 2.5916 -0.6398 38 1 6.0524 1.0518 -0.1775 39 1 6.8350 2.3991 2.1779 40 1 8.7150 1.5242 3.2649 41 1 11.0637 1.3368 1.7485 42 1 10.3736 -0.3010 1.8459 43 1 12.7707 4.6087 4.1781 44 1 10.4286 -0.5734 5.6266 45 1 9.8482 -1.3912 4.0788 46 1 12.2021 -1.2826 3.1383 47 1 12.7833 -0.4647 4.6856 48 1 3.4700 4.8592 -0.6758 49 1 2.2358 3.8111 -1.4150 50 1 2.4008 3.8792 0.3560 51 1 5.1024 1.6157 -2.0544 52 1 3.7587 2.5351 -2.7738 53 1 5.2359 3.3796 -2.2512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431116113.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -105.636331 kcal Electronic energy + Delta-G solvation = -31043.682812 eV Core-core repulsion = 26916.139818 eV Total energy + Delta-G solvation = -4127.542994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05016 -40.82903 -38.82770 -38.28219 -36.06778 -35.30731 -34.93407 -34.28145 -32.04469 -31.39679 -29.55082 -28.45289 -27.57818 -26.44336 -24.20346 -23.52288 -23.41336 -23.13983 -21.88638 -21.11450 -19.74374 -19.41451 -18.66096 -17.90040 -17.29998 -17.14733 -17.06733 -16.59698 -16.51269 -16.21984 -15.79945 -15.52773 -15.15544 -15.11050 -14.88271 -14.80877 -14.68037 -14.17229 -14.04935 -13.89412 -13.69238 -13.37962 -13.34642 -13.18729 -13.01338 -12.99114 -12.84795 -12.61462 -12.46684 -12.16399 -12.16316 -12.07018 -11.83345 -11.62535 -11.53571 -11.45861 -11.27073 -11.03831 -10.78134 -10.71084 -10.38955 -10.34334 -10.30871 -9.69087 -8.32290 -6.33716 1.30554 1.37871 1.46671 1.65359 2.13884 2.33016 2.59822 2.91821 3.11913 3.24323 3.26798 3.41747 3.45781 3.57559 3.73537 4.01318 4.02670 4.18091 4.22477 4.29684 4.31569 4.36809 4.48114 4.50188 4.52660 4.53544 4.60078 4.65856 4.78165 4.80266 4.81657 4.88008 4.93455 4.94431 5.03137 5.05987 5.07468 5.08095 5.11427 5.26325 5.28388 5.32121 5.42947 5.48638 5.51800 5.60330 5.69102 5.99008 6.30278 6.31510 6.64660 6.71953 7.10447 7.33586 7.56555 8.81851 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002545 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.963840 B =10999.090252 C =11617.759816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.380 6.380 4 C 0.075 3.925 5 H 0.099 0.901 6 C -0.173 4.173 7 C 0.107 3.893 8 O -0.549 6.549 9 C 0.138 3.862 10 N -0.734 5.734 11 C 0.700 3.300 12 O -0.639 6.639 13 N -0.716 5.716 14 C 0.178 3.822 15 C -0.041 4.041 16 C -0.473 4.473 17 H 0.048 0.952 18 C 0.036 3.964 19 N -0.936 5.936 20 Si 0.918 3.082 21 H -0.291 1.291 22 H -0.298 1.298 23 H -0.230 1.230 24 C -0.153 4.153 25 C -0.186 4.186 26 C -0.058 4.058 27 C -0.103 4.103 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.385 0.615 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.408 0.592 40 H 0.410 0.590 41 H 0.026 0.974 42 H 0.060 0.940 43 H 0.264 0.736 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 -7.421 -9.191 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.299 6.299 4 C 0.017 3.983 5 H 0.116 0.884 6 C -0.210 4.210 7 C 0.066 3.934 8 O -0.356 6.356 9 C 0.013 3.987 10 N -0.392 5.392 11 C 0.400 3.600 12 O -0.521 6.521 13 N -0.370 5.370 14 C 0.053 3.947 15 C -0.042 4.042 16 C -0.511 4.511 17 H 0.066 0.934 18 C -0.163 4.163 19 N -0.575 5.575 20 Si 0.745 3.255 21 H -0.219 1.219 22 H -0.226 1.226 23 H -0.152 1.152 24 C -0.190 4.190 25 C -0.224 4.224 26 C -0.059 4.059 27 C -0.160 4.160 28 C -0.202 4.202 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.246 0.754 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.091 0.909 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.266 -7.329 -10.596 25.725 hybrid contribution 1.289 0.456 0.696 1.535 sum -20.977 -6.872 -9.900 24.192 Atomic orbital electron populations 1.21746 0.92933 1.03210 1.02691 1.22703 0.96331 0.83232 1.00674 1.87927 1.19972 1.27396 1.94581 1.23576 0.81727 0.97213 0.95820 0.88363 1.24135 0.98665 1.00275 0.97974 1.22522 0.91393 0.83063 0.96466 1.86545 1.66440 1.27136 1.55500 1.21538 0.89191 1.00863 0.87108 1.44791 1.17832 1.61528 1.14999 1.16078 0.80914 0.79123 0.83894 1.90851 1.73370 1.57695 1.30227 1.44886 1.16477 1.66755 1.08861 1.20752 0.81529 0.96187 0.96211 1.19442 1.02117 0.89987 0.92687 1.20374 1.26483 0.98848 1.05349 0.93377 1.25511 0.97323 0.94351 0.99074 1.70002 1.39229 1.05501 1.42812 0.86245 0.77879 0.81073 0.80262 1.21872 1.22570 1.15209 1.22817 0.96937 0.99896 0.99319 1.23115 0.93577 1.02581 1.03128 1.22243 0.93777 0.95949 0.93886 1.21160 0.96922 0.95859 1.02075 1.21856 1.01172 1.02190 0.94943 0.92163 0.89496 0.92370 0.92582 0.92979 0.90007 0.88392 0.76552 0.91925 0.90307 0.75615 0.75435 0.95554 0.92157 0.92681 0.89541 0.88238 0.89034 0.89914 0.92719 0.91845 0.92680 0.91811 0.90879 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.63 6.51 71.98 0.47 1.09 16 3 O -0.38 -6.77 9.45 -148.98 -1.41 -8.18 16 4 C 0.07 1.26 3.35 31.12 0.10 1.37 16 5 H 0.10 1.49 7.17 -2.39 -0.02 1.47 16 6 C -0.17 -2.95 6.98 31.12 0.22 -2.74 16 7 C 0.11 2.06 1.30 -10.27 -0.01 2.04 16 8 O -0.55 -11.57 12.50 -148.98 -1.86 -13.43 16 9 C 0.14 3.15 3.93 86.38 0.34 3.49 16 10 N -0.73 -18.62 5.33 -478.54 -2.55 -21.17 16 11 C 0.70 24.75 8.55 179.06 1.53 26.28 16 12 O -0.64 -27.51 16.33 -4.00 -0.07 -27.57 16 13 N -0.72 -25.89 5.48 -478.54 -2.62 -28.51 16 14 C 0.18 7.29 5.08 86.38 0.44 7.73 16 15 C -0.04 -1.71 0.85 -52.93 -0.04 -1.75 16 16 C -0.47 -24.22 9.19 25.60 0.24 -23.99 16 17 H 0.05 2.71 8.06 -2.91 -0.02 2.68 16 18 C 0.04 2.00 5.46 84.65 0.46 2.46 16 19 N -0.94 -55.47 13.96 21.45 0.30 -55.18 16 20 Si 0.92 44.20 24.69 68.60 1.69 45.89 16 21 H -0.29 -14.59 6.95 99.48 0.69 -13.89 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 23 H -0.23 -10.05 6.13 99.48 0.61 -9.44 16 24 C -0.15 -5.23 9.96 30.62 0.30 -4.92 16 25 C -0.19 -6.89 8.71 30.62 0.27 -6.62 16 26 C -0.06 -1.05 1.30 -51.65 -0.07 -1.12 16 27 C -0.10 -1.96 7.92 71.98 0.57 -1.39 16 28 C -0.14 -2.47 8.15 71.98 0.59 -1.88 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.10 1.79 7.65 -2.39 -0.02 1.77 16 36 H 0.38 6.54 7.81 -74.06 -0.58 5.96 16 37 H 0.06 1.68 7.78 -2.39 -0.02 1.66 16 38 H 0.08 1.76 6.87 -2.39 -0.02 1.74 16 39 H 0.41 8.14 7.53 -92.70 -0.70 7.44 16 40 H 0.41 13.59 8.36 -92.71 -0.78 12.81 16 41 H 0.03 1.23 4.24 -2.39 -0.01 1.22 16 42 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.05 1.12 7.84 -2.39 -0.02 1.10 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.05 1.11 7.19 -2.38 -0.02 1.09 16 51 H 0.06 1.05 6.94 -2.39 -0.02 1.03 16 52 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 53 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.17 415.05 -1.62 -69.79 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -1.24 Total: 39.18 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.14 Total: -0.82 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -4.88 Total: -104.86 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -3.34 Total: -49.19 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.69 Total: 45.89 kcal Total: -68.17 -1.62 -69.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431116113.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.849 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds