Wall clock time and date at job start Sat Apr 11 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.47080 * 2 1 4 4 C 1.42905 * 114.00079 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.92668 * 18.65933 * 4 3 2 6 6 C 1.53883 * 113.63838 * 247.31888 * 4 3 2 7 7 C 1.53882 * 87.18276 * 220.48984 * 6 4 3 8 8 H 1.08995 * 113.64326 * 139.51063 * 7 6 4 9 9 N 1.46507 * 113.64224 * 270.50224 * 7 6 4 10 10 C 1.34780 * 119.99496 * 252.31990 * 9 7 6 11 11 O 1.21581 * 120.00324 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99508 * 179.97438 * 10 9 7 13 13 C 1.46504 * 119.99752 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46900 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47280 * 299.99762 * 14 13 12 16 16 C 1.52997 * 109.47408 * 60.00323 * 14 13 12 17 17 C 1.50701 * 109.46928 * 180.02562 * 14 13 12 18 18 H 1.08003 * 120.00053 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99930 * 180.02562 * 17 14 13 20 20 N 1.31510 * 119.99928 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99759 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47375 * 60.00166 * 21 19 17 23 23 H 1.48507 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47194 * 299.99577 * 21 19 17 25 25 C 1.53194 * 113.64261 * 149.99442 * 4 3 2 26 26 C 1.53852 * 114.62158 * 255.69656 * 25 4 3 27 27 C 1.55437 * 102.05129 * 151.41435 * 26 25 4 28 28 C 1.54996 * 101.00962 * 326.32753 * 27 26 25 29 29 O 1.42625 * 115.39969 * 22.52152 * 25 4 3 30 30 H 1.09002 * 109.46614 * 60.00745 * 1 2 3 31 31 H 1.08997 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47456 * 300.01037 * 1 2 3 33 33 H 1.08989 * 109.47185 * 239.99347 * 2 1 3 34 34 H 1.09002 * 109.46614 * 119.99255 * 2 1 3 35 35 H 1.08997 * 113.59999 * 335.06595 * 6 4 3 36 36 H 1.09004 * 113.59727 * 105.83799 * 6 4 3 37 37 H 0.96992 * 120.00434 * 72.31453 * 9 7 6 38 38 H 0.96997 * 120.00441 * 0.02562 * 12 10 9 39 39 H 1.08993 * 109.47122 * 300.00169 * 13 12 10 40 40 H 1.09000 * 109.46963 * 60.00273 * 13 12 10 41 41 H 1.09001 * 109.46656 * 60.00194 * 15 14 13 42 42 H 1.09001 * 109.47112 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.47566 * 300.00296 * 15 14 13 44 44 H 1.09006 * 109.46832 * 59.99418 * 16 14 13 45 45 H 1.09001 * 109.47517 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.46912 * 300.00041 * 16 14 13 47 47 H 0.97001 * 119.99669 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.91214 * 269.59918 * 26 25 4 49 49 H 1.08998 * 110.91332 * 33.22158 * 26 25 4 50 50 H 1.08991 * 111.11506 * 84.26386 * 27 26 25 51 51 H 1.09002 * 111.10704 * 208.35536 * 27 26 25 52 52 H 1.08998 * 110.30992 * 277.22104 * 28 27 26 53 53 H 1.09000 * 110.30327 * 155.07036 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9295 0.5454 -0.3203 6 6 4.0025 2.0509 1.3014 7 6 4.9838 2.8441 0.4205 8 1 5.1433 3.8684 0.7570 9 7 6.2345 2.1320 0.1463 10 6 7.3789 2.5278 0.7381 11 8 7.3734 3.4760 1.4992 12 7 8.5294 1.8725 0.4862 13 6 9.7734 2.3030 1.1291 14 6 10.9210 1.3979 0.6767 15 6 10.6164 -0.0483 1.0725 16 6 11.0741 1.4894 -0.8429 17 6 12.2006 1.8404 1.3384 18 1 12.1959 2.6832 2.0138 19 6 13.3775 1.1699 1.0809 20 7 13.3833 0.1440 0.2581 21 14 14.9638 1.7189 1.9006 22 1 14.8155 1.6296 3.3755 23 1 16.0779 0.8410 1.4606 24 1 15.2592 3.1226 1.5168 25 6 3.9477 2.7200 -0.7012 26 6 4.5429 2.4767 -2.0989 27 6 4.2714 3.8331 -2.8078 28 6 2.9255 4.2429 -2.1573 29 8 3.0150 3.7951 -0.7933 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8898 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 3.2957 2.6798 1.8426 36 1 4.4868 1.3123 1.9403 37 1 6.2390 1.3758 -0.4611 38 1 8.5339 1.1163 -0.1212 39 1 9.9902 3.3334 0.8475 40 1 9.6646 2.2374 2.2117 41 1 9.6908 -0.3686 0.5942 42 1 11.4337 -0.6932 0.7498 43 1 10.5074 -0.1135 2.1551 44 1 11.2911 2.5197 -1.1248 45 1 11.8919 0.8449 -1.1652 46 1 10.1484 1.1691 -1.3212 47 1 14.2113 -0.3279 0.0772 48 1 5.6127 2.2774 -2.0368 49 1 4.0255 1.6622 -2.6057 50 1 5.0534 4.5578 -2.5818 51 1 4.1631 3.6987 -3.8841 52 1 2.0952 3.7504 -2.6634 53 1 2.8024 5.3253 -2.1927 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458668981.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:02 Heat of formation + Delta-G solvation = -115.601298 kcal Electronic energy + Delta-G solvation = -31165.638760 eV Core-core repulsion = 27037.663653 eV Total energy + Delta-G solvation = -4127.975107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17767 -40.68143 -38.70053 -38.25708 -37.05189 -35.03197 -33.94897 -33.06074 -32.44088 -31.58644 -28.68711 -27.53156 -27.46794 -26.84190 -25.27665 -23.98165 -23.71073 -22.64922 -22.04533 -20.64978 -20.27649 -19.78976 -17.98270 -17.71527 -17.60157 -17.41081 -16.68515 -16.60051 -16.43739 -16.35033 -16.04645 -15.29584 -15.25634 -14.78726 -14.68611 -14.54725 -14.37615 -14.02059 -13.93300 -13.82006 -13.70807 -13.17812 -13.09140 -13.07093 -12.92422 -12.70908 -12.65327 -12.61039 -12.24542 -12.22584 -12.13846 -12.12102 -11.94336 -11.67268 -11.54391 -11.45697 -11.37474 -11.14126 -10.69104 -10.64051 -10.39785 -10.34656 -10.15521 -9.68373 -8.00790 -6.15840 1.45076 1.46159 1.51877 1.59454 2.14476 2.46647 2.61064 2.82532 3.22947 3.28533 3.37333 3.47227 3.63135 3.75391 3.89736 4.03867 4.08176 4.22622 4.33035 4.37308 4.42175 4.48704 4.53469 4.55832 4.71562 4.74396 4.75766 4.81948 4.87851 4.89550 4.91653 4.95352 5.02544 5.05760 5.06586 5.08894 5.13000 5.20776 5.23067 5.29699 5.40112 5.46260 5.63240 5.69302 5.70286 6.00841 6.03821 6.18595 6.24522 6.39175 6.46022 6.88088 7.13458 7.51545 7.61419 8.97838 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.002279 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.241480 B =12283.173057 C =12753.886112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.072 3.928 5 H 0.119 0.881 6 C -0.163 4.163 7 C 0.136 3.864 8 H 0.083 0.917 9 N -0.708 5.708 10 C 0.702 3.298 11 O -0.638 6.638 12 N -0.722 5.722 13 C 0.168 3.832 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.528 4.528 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.943 3.057 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.278 1.278 25 C 0.092 3.908 26 C -0.145 4.145 27 C -0.151 4.151 28 C 0.044 3.956 29 O -0.364 6.364 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.407 0.593 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.260 0.740 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.068 0.932 51 H 0.107 0.893 52 H 0.074 0.926 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.249 -2.514 -8.980 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.013 3.987 5 H 0.137 0.863 6 C -0.202 4.202 7 C 0.029 3.971 8 H 0.101 0.899 9 N -0.365 5.365 10 C 0.402 3.598 11 O -0.520 6.520 12 N -0.377 5.377 13 C 0.043 3.957 14 C 0.052 3.948 15 C -0.178 4.178 16 C -0.177 4.177 17 C -0.567 4.567 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.203 1.203 25 C 0.051 3.949 26 C -0.182 4.182 27 C -0.189 4.189 28 C -0.032 4.032 29 O -0.282 6.282 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.120 0.880 50 H 0.086 0.914 51 H 0.125 0.875 52 H 0.092 0.908 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.347 -1.551 -8.210 25.741 hybrid contribution 1.432 -0.325 0.201 1.483 sum -22.915 -1.876 -8.008 24.346 Atomic orbital electron populations 1.21744 0.93152 1.03189 1.02510 1.22762 0.96334 0.83278 1.00870 1.88043 1.19887 1.27375 1.94429 1.24171 0.82118 0.97267 0.95104 0.86348 1.23918 0.98003 1.00397 0.97911 1.21603 0.82177 0.96761 0.96576 0.89911 1.44462 1.05199 1.36297 1.50577 1.16095 0.81009 0.82133 0.80593 1.90877 1.86298 1.32350 1.42435 1.45153 1.06453 1.35631 1.50472 1.21133 0.82080 0.97410 0.95050 1.18353 0.90734 0.92117 0.93622 1.21665 0.99469 0.98778 0.97862 1.21661 1.00152 0.99238 0.96694 1.21242 0.93614 1.14791 1.27054 0.93841 1.25422 1.01012 0.95061 0.95590 1.69891 1.27440 1.20547 1.35783 0.85854 0.80097 0.78116 0.78946 1.20364 1.20812 1.20347 1.23330 0.88670 0.87706 0.95241 1.23098 1.02805 0.99431 0.92876 1.23262 0.97006 0.96522 1.02062 1.23679 0.97815 1.00540 0.81149 1.88337 1.60964 1.50063 1.28861 0.92239 0.89277 0.92777 0.91941 0.93008 0.89281 0.90520 0.75047 0.75628 0.94652 0.94707 0.94245 0.91901 0.96445 0.96412 0.91912 0.94206 0.93039 0.89003 0.87999 0.91357 0.87483 0.90805 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.04 0.61 6.50 71.98 0.47 1.08 16 3 O -0.38 -7.66 10.02 -135.62 -1.36 -9.02 16 4 C 0.07 1.31 3.76 30.96 0.12 1.43 16 5 H 0.12 1.53 7.86 -2.39 -0.02 1.51 16 6 C -0.16 -3.70 7.71 31.19 0.24 -3.46 16 7 C 0.14 3.38 4.08 45.36 0.19 3.57 16 8 H 0.08 2.64 7.46 -2.39 -0.02 2.62 16 9 N -0.71 -16.85 4.40 -456.05 -2.01 -18.85 16 10 C 0.70 23.87 8.57 179.05 1.53 25.40 16 11 O -0.64 -28.07 15.94 -3.97 -0.06 -28.13 16 12 N -0.72 -24.12 4.96 -478.54 -2.38 -26.49 16 13 C 0.17 7.10 4.50 86.38 0.39 7.49 16 14 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 15 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 16 C -0.12 -5.15 8.08 71.98 0.58 -4.56 16 17 C -0.53 -27.73 8.01 25.60 0.21 -27.52 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 19 C 0.03 1.51 5.15 84.66 0.44 1.95 16 20 N -0.90 -47.18 9.35 21.45 0.20 -46.98 16 21 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 C 0.09 1.85 1.40 -10.37 -0.01 1.83 16 26 C -0.14 -2.09 6.06 31.72 0.19 -1.90 16 27 C -0.15 -2.14 7.16 32.12 0.23 -1.91 16 28 C 0.04 0.73 7.79 72.67 0.57 1.29 16 29 O -0.36 -8.63 10.77 -135.62 -1.46 -10.09 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.41 6.79 7.47 -92.71 -0.69 6.10 16 38 H 0.41 11.28 6.18 -92.71 -0.57 10.71 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 42 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 46 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 47 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 48 H 0.09 1.30 6.15 -2.39 -0.01 1.28 16 49 H 0.10 1.07 8.10 -2.39 -0.02 1.06 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.72 411.20 1.02 -65.69 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.36 Total: 28.05 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.42 Total: 1.40 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -4.18 Total: -92.33 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -2.88 Total: -47.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -66.72 1.02 -65.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668981.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.907 kcal (2) G-P(sol) polarization free energy of solvation -66.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds