Wall clock time and date at job start Sat Apr 11 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47048 * 2 1 4 4 C 1.42902 * 113.99791 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.86743 * 20.33914 * 4 3 2 6 6 C 1.53880 * 113.64558 * 249.05405 * 4 3 2 7 7 C 1.54070 * 87.11849 * 220.52239 * 6 4 3 8 8 H 1.09001 * 113.55904 * 270.41913 * 7 6 4 9 9 N 1.46492 * 113.78000 * 139.46834 * 7 6 4 10 10 C 1.34776 * 120.00262 * 175.17181 * 9 7 6 11 11 O 1.21591 * 119.99939 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00265 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47022 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47168 * 299.99725 * 14 13 12 16 16 C 1.52994 * 109.47296 * 59.99920 * 14 13 12 17 17 C 1.50707 * 109.47113 * 180.02562 * 14 13 12 18 18 H 1.07992 * 119.99897 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99474 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00722 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 119.99547 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47158 * 59.99921 * 21 19 17 23 23 H 1.48501 * 109.47074 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47202 * 299.99867 * 21 19 17 25 25 C 1.53198 * 113.63991 * 151.61004 * 4 3 2 26 26 C 1.53852 * 114.62178 * 23.54780 * 25 4 3 27 27 C 1.55435 * 102.04982 * 208.54620 * 26 25 4 28 28 C 1.54999 * 101.01099 * 33.67429 * 27 26 25 29 29 O 1.42627 * 115.41534 * 256.71176 * 25 4 3 30 30 H 1.09007 * 109.47155 * 59.99872 * 1 2 3 31 31 H 1.09005 * 109.47032 * 300.00272 * 1 2 3 32 32 H 1.08993 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46676 * 119.99982 * 2 1 3 34 34 H 1.08997 * 109.47314 * 239.99713 * 2 1 3 35 35 H 1.09010 * 113.59609 * 335.06399 * 6 4 3 36 36 H 1.08996 * 113.59885 * 105.91546 * 6 4 3 37 37 H 0.96998 * 120.00016 * 355.16795 * 9 7 6 38 38 H 0.96998 * 120.00014 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47558 * 299.99963 * 13 12 10 40 40 H 1.08998 * 109.47350 * 60.00108 * 13 12 10 41 41 H 1.09001 * 109.46720 * 59.99820 * 15 14 13 42 42 H 1.08999 * 109.47295 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47198 * 300.00010 * 15 14 13 44 44 H 1.09000 * 109.47684 * 60.00121 * 16 14 13 45 45 H 1.08999 * 109.47393 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47396 * 300.00130 * 16 14 13 47 47 H 0.96998 * 120.00376 * 179.97438 * 20 19 17 48 48 H 1.09000 * 110.91489 * 326.73688 * 26 25 4 49 49 H 1.09006 * 110.91376 * 90.35914 * 26 25 4 50 50 H 1.09000 * 111.11437 * 275.73664 * 27 26 25 51 51 H 1.09004 * 111.11118 * 151.60625 * 27 26 25 52 52 H 1.09006 * 110.29716 * 204.94633 * 28 27 26 53 53 H 1.08997 * 110.38727 * 82.83904 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9276 0.5547 -0.3481 6 6 4.0058 2.0113 1.3172 7 6 4.9849 2.8317 0.4557 8 1 5.9149 2.3079 0.2348 9 7 5.2019 4.1955 0.9445 10 6 6.1084 4.9908 0.3428 11 8 6.7465 4.5762 -0.6056 12 7 6.3076 6.2458 0.7922 13 6 7.2934 7.1100 0.1384 14 6 7.3229 8.4702 0.8383 15 6 5.9397 9.1183 0.7520 16 6 7.7062 8.2798 2.3072 17 6 8.3366 9.3595 0.1653 18 1 8.9033 8.9913 -0.6769 19 6 8.5403 10.6433 0.6251 20 7 7.8498 11.0921 1.6505 21 14 9.7962 11.7459 -0.2095 22 1 9.4233 11.9303 -1.6350 23 1 9.8240 13.0665 0.4691 24 1 11.1392 11.1178 -0.1264 25 6 3.9461 2.7392 -0.6667 26 6 2.9340 3.8975 -0.6994 27 6 3.3692 4.6729 -1.9742 28 6 3.8560 3.5101 -2.8762 29 8 4.4781 2.5732 -1.9796 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.3002 2.6237 1.8789 36 1 4.4927 1.2541 1.9316 37 1 4.6931 4.5261 1.7013 38 1 5.7984 6.5766 1.5485 39 1 8.2791 6.6486 0.2002 40 1 7.0206 7.2454 -0.9081 41 1 5.2062 8.4752 1.2384 42 1 5.9606 10.0871 1.2510 43 1 5.6667 9.2540 -0.2945 44 1 8.6917 7.8182 2.3688 45 1 7.7268 9.2488 2.8059 46 1 6.9727 7.6367 2.7937 47 1 7.9934 11.9951 1.9742 48 1 1.9158 3.5218 -0.8010 49 1 3.0297 4.5230 0.1882 50 1 4.1815 5.3657 -1.7543 51 1 2.5239 5.1924 -2.4256 52 1 4.5804 3.8744 -3.6047 53 1 3.0115 3.0442 -3.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458668982.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:07 Heat of formation + Delta-G solvation = -119.553051 kcal Electronic energy + Delta-G solvation = -31662.390709 eV Core-core repulsion = 27534.244241 eV Total energy + Delta-G solvation = -4128.146468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11721 -40.53955 -38.72119 -38.20954 -36.99940 -34.96952 -34.05112 -33.00134 -32.47968 -31.59489 -28.48214 -27.54123 -27.47863 -26.85839 -24.94775 -24.08498 -23.69288 -22.87381 -21.92204 -20.59566 -20.15709 -19.44435 -18.12290 -17.96815 -17.74212 -17.15372 -16.75842 -16.60144 -16.41809 -16.29971 -16.01627 -15.43438 -15.23778 -14.76974 -14.62491 -14.45873 -14.41284 -14.06537 -13.96288 -13.54764 -13.23713 -13.18467 -13.08509 -13.05402 -12.84518 -12.67237 -12.61737 -12.51698 -12.23785 -12.22512 -12.19893 -12.12514 -12.05080 -11.66800 -11.60955 -11.46160 -11.28857 -11.10490 -10.95272 -10.69303 -10.42500 -10.37783 -10.04692 -9.55341 -8.01035 -6.16307 1.44412 1.45377 1.51947 1.76648 2.25106 2.46140 2.58162 3.08113 3.22348 3.31821 3.41967 3.49157 3.66259 3.69312 3.85121 4.02489 4.14524 4.24064 4.32664 4.38084 4.44573 4.46666 4.55583 4.55897 4.71387 4.73243 4.79207 4.81844 4.83840 4.87379 4.96045 5.00724 5.02870 5.08225 5.08322 5.09352 5.13557 5.22279 5.24130 5.32822 5.41168 5.57140 5.67089 5.68470 5.69466 6.03058 6.14599 6.17476 6.24099 6.32032 6.45543 6.87538 7.22263 7.51025 7.72468 8.97594 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.002386 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.739010 B =11731.992751 C =11994.698987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.379 6.379 4 C 0.072 3.928 5 H 0.100 0.900 6 C -0.134 4.134 7 C 0.140 3.860 8 H 0.089 0.911 9 N -0.718 5.718 10 C 0.697 3.303 11 O -0.631 6.631 12 N -0.726 5.726 13 C 0.171 3.829 14 C 0.053 3.947 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.528 4.528 18 H 0.042 0.958 19 C 0.028 3.972 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.278 1.278 25 C 0.065 3.935 26 C -0.109 4.109 27 C -0.151 4.151 28 C 0.052 3.948 29 O -0.385 6.385 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.411 0.589 38 H 0.404 0.596 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.260 0.740 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.048 0.952 51 H 0.098 0.902 52 H 0.070 0.930 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -20.784 1.509 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.298 6.298 4 C 0.013 3.987 5 H 0.118 0.882 6 C -0.172 4.172 7 C 0.033 3.967 8 H 0.107 0.893 9 N -0.374 5.374 10 C 0.397 3.603 11 O -0.512 6.512 12 N -0.382 5.382 13 C 0.047 3.953 14 C 0.052 3.948 15 C -0.176 4.176 16 C -0.176 4.176 17 C -0.567 4.567 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.770 3.230 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.203 1.203 25 C 0.023 3.977 26 C -0.147 4.147 27 C -0.189 4.189 28 C -0.025 4.025 29 O -0.304 6.304 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.117 0.883 52 H 0.089 0.911 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.371 -20.963 0.709 26.608 hybrid contribution 0.810 1.181 -0.179 1.443 sum -15.561 -19.782 0.530 25.175 Atomic orbital electron populations 1.21754 0.92927 1.03247 1.02679 1.22722 0.96236 0.83006 1.00829 1.87897 1.19536 1.27785 1.94541 1.23676 0.81964 0.97600 0.95498 0.88217 1.23585 0.97227 0.99847 0.96513 1.22357 0.97666 0.81953 0.94683 0.89297 1.44777 1.42464 1.13522 1.36656 1.16192 0.80593 0.81196 0.82288 1.90900 1.53217 1.75421 1.31671 1.45183 1.44059 1.12049 1.36901 1.21051 0.89174 0.90206 0.94899 1.18349 0.94192 0.89242 0.93033 1.21641 0.95728 1.01737 0.98448 1.21649 0.97477 1.00804 0.97717 1.21231 1.21786 0.98345 1.15304 0.93929 1.25436 0.97436 0.98735 0.95540 1.69893 1.41195 1.17299 1.25277 0.85844 0.80028 0.78323 0.78762 1.20347 1.20741 1.20344 1.24288 0.93824 0.96053 0.83487 1.22524 0.99009 0.94591 0.98562 1.23194 1.01326 0.97858 0.96530 1.23423 0.97315 0.88972 0.92748 1.88318 1.64649 1.58509 1.18893 0.92668 0.91908 0.89442 0.91919 0.93288 0.86808 0.87249 0.75147 0.75911 0.95024 0.95042 0.94400 0.91912 0.96507 0.96495 0.91910 0.94366 0.93027 0.88550 0.89485 0.93359 0.88318 0.91135 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.59 6.50 71.98 0.47 1.06 16 3 O -0.38 -6.45 8.94 -148.98 -1.33 -7.78 16 4 C 0.07 1.27 4.09 30.96 0.13 1.40 16 5 H 0.10 1.69 7.88 -2.39 -0.02 1.67 16 6 C -0.13 -1.92 7.44 31.25 0.23 -1.68 16 7 C 0.14 3.25 3.73 45.42 0.17 3.42 16 8 H 0.09 2.50 7.99 -2.39 -0.02 2.48 16 9 N -0.72 -17.54 3.98 -455.75 -1.81 -19.35 16 10 C 0.70 24.36 8.44 179.05 1.51 25.87 16 11 O -0.63 -28.21 16.25 -4.00 -0.07 -28.27 16 12 N -0.73 -25.30 4.96 -478.53 -2.37 -27.68 16 13 C 0.17 7.48 4.50 86.38 0.39 7.86 16 14 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 15 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 16 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 17 C -0.53 -28.20 8.01 25.60 0.21 -28.00 16 18 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 19 C 0.03 1.50 5.15 84.65 0.44 1.94 16 20 N -0.90 -47.88 9.35 21.45 0.20 -47.67 16 21 Si 0.94 42.95 29.54 68.60 2.03 44.98 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 C 0.07 1.54 1.61 -10.37 -0.02 1.52 16 26 C -0.11 -2.37 5.70 31.72 0.18 -2.19 16 27 C -0.15 -3.80 7.16 32.12 0.23 -3.57 16 28 C 0.05 1.35 7.79 72.67 0.57 1.92 16 29 O -0.38 -11.66 11.13 -148.98 -1.66 -13.32 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 1.34 8.11 -2.38 -0.02 1.32 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.41 7.24 8.51 -92.71 -0.79 6.45 16 38 H 0.40 11.99 6.18 -92.71 -0.57 11.41 16 39 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 42 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 46 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 47 H 0.26 13.40 8.31 -92.71 -0.77 12.62 16 48 H 0.10 1.93 7.03 -2.39 -0.02 1.91 16 49 H 0.09 1.76 6.83 -2.38 -0.02 1.74 16 50 H 0.05 1.53 8.02 -2.39 -0.02 1.51 16 51 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 53 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.35 410.86 0.90 -66.45 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.46 Total: 30.73 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.37 Total: 1.92 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.99 Total: -94.70 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -3.06 Total: -49.37 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.35 0.90 -66.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668982.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.104 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds