Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46672 * 2 1 4 4 C 1.42899 * 113.99910 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.87261 * 18.71963 * 4 3 2 6 6 C 1.53886 * 113.72288 * 247.36762 * 4 3 2 7 7 C 1.53884 * 87.18123 * 270.48435 * 6 4 3 8 8 H 1.09002 * 113.64294 * 89.50222 * 7 6 4 9 9 N 1.46499 * 113.72131 * 220.47972 * 7 6 4 10 10 C 1.34773 * 120.00276 * 253.97343 * 9 7 6 11 11 O 1.21585 * 119.99857 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00089 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00084 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47272 * 299.99975 * 14 13 12 16 16 C 1.53001 * 109.47182 * 60.00221 * 14 13 12 17 17 C 1.50701 * 109.47386 * 180.02562 * 14 13 12 18 18 H 1.08007 * 119.99867 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00200 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00096 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00113 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47416 * 119.99894 * 21 19 17 24 24 H 1.48497 * 109.47128 * 240.00141 * 21 19 17 25 25 C 1.53188 * 113.64328 * 150.00351 * 4 3 2 26 26 C 1.53857 * 114.62774 * 333.40599 * 25 4 3 27 27 C 1.55436 * 102.04762 * 208.55458 * 26 25 4 28 28 C 1.54996 * 101.01592 * 33.67344 * 27 26 25 29 29 O 1.42626 * 115.40467 * 206.57443 * 25 4 3 30 30 H 1.09007 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47310 * 299.99988 * 1 2 3 32 32 H 1.09000 * 109.47263 * 59.99845 * 1 2 3 33 33 H 1.08996 * 109.46936 * 240.00167 * 2 1 3 34 34 H 1.08997 * 109.46833 * 119.99899 * 2 1 3 35 35 H 1.09001 * 113.60153 * 155.90632 * 6 4 3 36 36 H 1.09004 * 113.59617 * 25.05764 * 6 4 3 37 37 H 0.97003 * 119.99470 * 73.97715 * 9 7 6 38 38 H 0.97003 * 119.99656 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47316 * 300.00222 * 13 12 10 40 40 H 1.09002 * 109.47204 * 59.99915 * 13 12 10 41 41 H 1.09004 * 109.46485 * 59.99955 * 15 14 13 42 42 H 1.08995 * 109.47089 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.46839 * 300.00404 * 15 14 13 44 44 H 1.08996 * 109.47040 * 60.00055 * 16 14 13 45 45 H 1.09005 * 109.47195 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47009 * 299.99655 * 16 14 13 47 47 H 0.97001 * 120.00482 * 180.02562 * 20 19 17 48 48 H 1.09006 * 110.91541 * 326.74099 * 26 25 4 49 49 H 1.08994 * 110.91354 * 90.36141 * 26 25 4 50 50 H 1.09000 * 111.11038 * 275.73647 * 27 26 25 51 51 H 1.09003 * 111.11182 * 151.61702 * 27 26 25 52 52 H 1.08998 * 110.30210 * 204.94359 * 28 27 26 53 53 H 1.08995 * 110.29735 * 82.79466 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9282 0.5455 -0.3233 6 6 4.0057 2.0494 1.2996 7 6 3.8530 3.4357 0.6493 8 1 2.8838 3.8999 0.8318 9 7 4.9757 4.3384 0.9156 10 6 4.8291 5.3582 1.7844 11 8 3.7652 5.5288 2.3476 12 7 5.8619 6.1890 2.0289 13 6 5.7023 7.2978 2.9729 14 6 7.0136 8.0805 3.0666 15 6 8.1280 7.1522 3.5539 16 6 7.3772 8.6335 1.6871 17 6 6.8497 9.2208 4.0381 18 1 5.9049 9.3719 4.5391 19 6 7.9062 10.0706 4.2883 20 7 9.0572 9.8858 3.6796 21 14 7.7029 11.4845 5.4921 22 1 6.3223 11.4742 6.0390 23 1 8.6761 11.3324 6.6034 24 1 7.9486 12.7704 4.7913 25 6 3.9469 2.7204 -0.7022 26 6 3.0109 3.2784 -1.7883 27 6 4.0122 3.9696 -2.7557 28 6 5.2407 3.0331 -2.6291 29 8 5.2595 2.6210 -1.2511 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.0417 1.7666 1.4862 36 1 3.3628 1.9013 2.1674 37 1 5.8246 4.2021 0.4664 38 1 6.7106 6.0530 1.5792 39 1 4.9088 7.9593 2.6256 40 1 5.4429 6.9039 3.9556 41 1 8.2467 6.3272 2.8514 42 1 9.0622 7.7098 3.6202 43 1 7.8689 6.7583 4.5366 44 1 6.5833 9.2948 1.3400 45 1 8.3116 9.1908 1.7538 46 1 7.4960 7.8085 0.9847 47 1 9.8007 10.4834 3.8558 48 1 2.4758 2.4733 -2.2921 49 1 2.3140 4.0027 -1.3668 50 1 4.2510 4.9783 -2.4186 51 1 3.6292 3.9791 -3.7762 52 1 6.1549 3.5733 -2.8749 53 1 5.1250 2.1674 -3.2812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458668983.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -120.186304 kcal Electronic energy + Delta-G solvation = -31190.382745 eV Core-core repulsion = 27062.208817 eV Total energy + Delta-G solvation = -4128.173928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09084 -40.67555 -38.86576 -38.22589 -36.73585 -35.00775 -34.07818 -33.11547 -32.49163 -31.54887 -28.62788 -27.55138 -27.50100 -26.91541 -25.09372 -24.10041 -23.52219 -22.71411 -21.84133 -20.74710 -20.53412 -19.48532 -18.20719 -17.77854 -17.71137 -17.06693 -16.63162 -16.55302 -16.46923 -16.35623 -15.94835 -15.33517 -15.20463 -14.73996 -14.69912 -14.59261 -14.36649 -14.20617 -13.98244 -13.69767 -13.65071 -13.19434 -13.15065 -13.09574 -12.76147 -12.70867 -12.69430 -12.56256 -12.35630 -12.23794 -12.15035 -12.13117 -11.96728 -11.64453 -11.49501 -11.46471 -11.35440 -11.13537 -10.71331 -10.67726 -10.40376 -10.37603 -10.16166 -9.60054 -8.01361 -6.16726 1.41846 1.45713 1.55407 1.79372 2.13031 2.24125 2.47164 2.96721 3.22078 3.37746 3.41138 3.49406 3.67912 3.77649 3.92465 4.07371 4.17019 4.21635 4.29783 4.36514 4.41428 4.44372 4.52784 4.54558 4.71825 4.77494 4.79025 4.82725 4.90440 4.93910 4.95266 5.00491 5.04651 5.06332 5.07261 5.07425 5.13082 5.21347 5.22830 5.30330 5.39735 5.53462 5.64453 5.68416 5.68499 5.93911 6.11551 6.16008 6.23076 6.30823 6.44932 6.87402 7.18693 7.50728 7.65912 8.97879 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002316 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.393814 B =12086.745713 C =12795.761879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.376 6.376 4 C 0.076 3.924 5 H 0.103 0.897 6 C -0.167 4.167 7 C 0.144 3.856 8 H 0.097 0.903 9 N -0.716 5.716 10 C 0.696 3.304 11 O -0.642 6.642 12 N -0.725 5.725 13 C 0.169 3.831 14 C 0.051 3.949 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.526 4.526 18 H 0.044 0.956 19 C 0.027 3.973 20 N -0.899 5.899 21 Si 0.946 3.054 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.091 3.909 26 C -0.128 4.128 27 C -0.155 4.155 28 C 0.046 3.954 29 O -0.361 6.361 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.410 0.590 38 H 0.404 0.596 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.260 0.740 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.104 0.896 52 H 0.100 0.900 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -21.950 -16.206 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.295 6.295 4 C 0.017 3.983 5 H 0.121 0.879 6 C -0.206 4.206 7 C 0.037 3.963 8 H 0.115 0.885 9 N -0.371 5.371 10 C 0.396 3.604 11 O -0.525 6.525 12 N -0.381 5.381 13 C 0.044 3.956 14 C 0.051 3.949 15 C -0.177 4.177 16 C -0.176 4.176 17 C -0.565 4.565 18 H 0.062 0.938 19 C -0.173 4.173 20 N -0.538 5.538 21 Si 0.773 3.227 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.207 1.207 25 C 0.049 3.951 26 C -0.166 4.166 27 C -0.192 4.192 28 C -0.030 4.030 29 O -0.279 6.279 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.241 0.759 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.122 0.878 52 H 0.118 0.882 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.043 -21.603 -15.598 28.476 hybrid contribution 0.634 0.909 0.618 1.269 sum -9.409 -20.694 -14.981 27.225 Atomic orbital electron populations 1.21772 0.92971 1.03390 1.02639 1.22779 0.96165 0.82505 1.01175 1.87882 1.18827 1.28353 1.94442 1.23017 0.82140 0.98148 0.94987 0.87940 1.23981 1.02314 0.95932 0.98354 1.22739 0.90241 0.88277 0.95041 0.88468 1.44775 1.16605 1.29604 1.46166 1.16249 0.83807 0.80053 0.80253 1.90846 1.28561 1.76587 1.56496 1.45201 1.14089 1.30909 1.47856 1.21111 0.98759 0.85812 0.89906 1.18368 0.89866 0.92537 0.94155 1.21657 1.01469 0.97062 0.97506 1.21650 1.01382 0.98899 0.95708 1.21283 0.97690 1.12508 1.24980 0.93812 1.25457 0.95075 0.99383 0.97337 1.69913 1.02453 1.38408 1.43016 0.85693 0.77849 0.79859 0.79312 1.20090 1.20705 1.20656 1.23218 0.84461 0.94273 0.93114 1.22816 0.97611 1.00743 0.95417 1.23307 0.95336 0.99218 1.01357 1.23721 0.99598 0.97962 0.81698 1.88247 1.25856 1.87193 1.26637 0.89051 0.92859 0.91991 0.91667 0.92735 0.88024 0.91290 0.75305 0.75914 0.94754 0.94818 0.94589 0.91805 0.96400 0.96340 0.91832 0.94557 0.93029 0.88765 0.90983 0.91524 0.87791 0.88196 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.64 6.50 71.98 0.47 1.11 16 3 O -0.38 -7.12 9.46 -148.98 -1.41 -8.53 16 4 C 0.08 1.39 4.10 30.96 0.13 1.52 16 5 H 0.10 1.50 7.87 -2.38 -0.02 1.48 16 6 C -0.17 -3.76 7.72 31.19 0.24 -3.52 16 7 C 0.14 3.76 3.70 45.36 0.17 3.93 16 8 H 0.10 3.10 7.28 -2.39 -0.02 3.09 16 9 N -0.72 -20.40 5.34 -456.07 -2.44 -22.84 16 10 C 0.70 26.21 8.57 179.06 1.53 27.74 16 11 O -0.64 -29.80 15.96 -3.98 -0.06 -29.86 16 12 N -0.73 -26.93 4.96 -478.56 -2.37 -29.30 16 13 C 0.17 7.57 4.50 86.38 0.39 7.96 16 14 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 15 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 16 C -0.12 -5.38 8.08 71.98 0.58 -4.79 16 17 C -0.53 -28.41 8.01 25.60 0.21 -28.20 16 18 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 19 C 0.03 1.45 5.15 84.65 0.44 1.88 16 20 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 21 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.09 1.78 1.41 -10.38 -0.01 1.77 16 26 C -0.13 -2.21 5.78 31.72 0.18 -2.03 16 27 C -0.15 -2.18 7.16 32.12 0.23 -1.95 16 28 C 0.05 0.60 7.79 72.66 0.57 1.17 16 29 O -0.36 -6.67 10.10 -148.98 -1.50 -8.17 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.41 9.90 7.85 -92.71 -0.73 9.17 16 38 H 0.40 13.07 6.18 -92.71 -0.57 12.50 16 39 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 42 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 47 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 48 H 0.09 1.38 7.94 -2.38 -0.02 1.36 16 49 H 0.07 1.47 7.78 -2.39 -0.02 1.46 16 50 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.51 412.31 0.45 -65.06 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.40 Total: 33.36 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.41 Total: 3.21 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -4.61 Total: -100.35 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.98 Total: -46.56 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.51 0.45 -65.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668983.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.122 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds