Wall clock time and date at job start Sat Apr 11 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47123 * 2 1 4 4 C 1.37103 * 120.00107 * 262.97689 * 3 2 1 5 5 H 1.08002 * 119.99988 * 142.21363 * 4 3 2 6 6 C 1.38949 * 120.00180 * 322.21478 * 4 3 2 7 7 N 1.31413 * 120.00077 * 157.13527 * 6 4 3 8 8 Si 1.86806 * 119.99684 * 337.13536 * 6 4 3 9 9 H 1.48502 * 109.46924 * 95.20539 * 8 6 4 10 10 H 1.48498 * 109.46807 * 215.20299 * 8 6 4 11 11 H 1.48496 * 109.47115 * 335.20349 * 8 6 4 12 12 C 1.34781 * 120.00010 * 82.97874 * 3 2 1 13 13 O 1.21294 * 119.99641 * 180.02562 * 12 3 2 14 14 C 1.50695 * 119.99913 * 359.97438 * 12 3 2 15 15 C 1.52995 * 109.47023 * 180.02562 * 14 12 3 16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 12 17 17 H 1.08998 * 110.88913 * 57.42594 * 16 15 14 18 18 C 1.55157 * 111.03976 * 181.33556 * 16 15 14 19 19 C 1.54334 * 103.02266 * 153.39184 * 18 16 15 20 20 N 1.47024 * 107.26617 * 338.13888 * 19 18 16 21 21 C 1.34773 * 125.64715 * 178.84777 * 20 19 18 22 22 O 1.21507 * 119.99833 * 179.69203 * 21 20 19 23 23 O 1.34631 * 120.00109 * 359.42001 * 21 20 19 24 24 C 1.45198 * 117.00368 * 180.27424 * 23 21 20 25 25 C 1.53002 * 109.47029 * 59.99401 * 24 23 21 26 26 C 1.52995 * 109.47587 * 179.97438 * 24 23 21 27 27 C 1.53004 * 109.47013 * 300.00051 * 24 23 21 28 28 C 1.47424 * 108.70205 * 358.58576 * 20 19 18 29 29 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47313 * 300.00080 * 1 2 3 31 31 H 1.09007 * 109.47352 * 60.00008 * 1 2 3 32 32 H 1.09003 * 109.47079 * 240.00655 * 2 1 3 33 33 H 1.08993 * 109.47420 * 119.99812 * 2 1 3 34 34 H 0.96994 * 119.99552 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46551 * 60.00307 * 14 12 3 36 36 H 1.08997 * 109.47458 * 300.00737 * 14 12 3 37 37 H 1.08995 * 109.47274 * 60.00586 * 15 14 12 38 38 H 1.09002 * 109.47250 * 300.00186 * 15 14 12 39 39 H 1.09003 * 110.71711 * 271.95312 * 18 16 15 40 40 H 1.09001 * 110.72146 * 35.04110 * 18 16 15 41 41 H 1.08999 * 109.98661 * 218.66106 * 19 18 16 42 42 H 1.08998 * 109.77781 * 97.49633 * 19 18 16 43 43 H 1.08997 * 109.46995 * 60.00650 * 25 24 23 44 44 H 1.09003 * 109.47070 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.47448 * 300.00308 * 25 24 23 46 46 H 1.08995 * 109.47056 * 59.99842 * 26 24 23 47 47 H 1.09003 * 109.47272 * 179.97438 * 26 24 23 48 48 H 1.08997 * 109.47099 * 299.99755 * 26 24 23 49 49 H 1.09003 * 109.47228 * 59.99589 * 27 24 23 50 50 H 1.09003 * 109.47288 * 179.97438 * 27 24 23 51 51 H 1.09001 * 109.46544 * 299.99849 * 27 24 23 52 52 H 1.08996 * 110.36996 * 143.19196 * 28 20 19 53 53 H 1.09006 * 110.36736 * 265.41106 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9792 -1.1784 5 1 2.1621 3.0229 -1.3458 6 6 3.0390 1.2424 -2.1574 7 7 2.9964 1.6320 -3.4117 8 14 3.9806 -0.3020 -1.6904 9 1 3.1111 -1.4899 -1.8858 10 1 5.1865 -0.4247 -2.5482 11 1 4.3925 -0.2189 -0.2662 12 6 2.1084 2.0641 1.1585 13 8 2.5123 3.2079 1.1583 14 6 1.7063 1.4071 2.4537 15 6 1.9032 2.3920 3.6078 16 6 1.4955 1.7247 4.9229 17 1 2.0686 0.8127 5.0899 18 6 1.6495 2.7047 6.1159 19 6 0.6152 2.1789 7.1336 20 7 -0.3760 1.3945 6.3827 21 6 -1.4324 0.7482 6.9145 22 8 -2.1932 0.1326 6.1944 23 8 -1.6416 0.7803 8.2440 24 6 -2.7954 0.0568 8.7475 25 6 -2.6655 -1.4245 8.3873 26 6 -2.8678 0.2069 10.2683 27 6 -4.0685 0.6251 8.1172 28 6 -0.0265 1.4372 4.9512 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.4536 1.1174 -4.0951 35 1 2.3233 0.5240 2.6199 36 1 0.6579 1.1133 2.4020 37 1 1.2860 3.2748 3.4414 38 1 2.9515 2.6861 3.6596 39 1 2.6578 2.6561 6.5271 40 1 1.4072 3.7231 5.8122 41 1 0.1254 3.0150 7.6327 42 1 1.1106 1.5444 7.8685 43 1 -1.7586 -1.8294 8.8363 44 1 -3.5319 -1.9676 8.7649 45 1 -2.6137 -1.5319 7.3039 46 1 -2.9602 1.2621 10.5253 47 1 -3.7343 -0.3359 10.6462 48 1 -1.9609 -0.1983 10.7170 49 1 -4.0167 0.5178 7.0337 50 1 -4.9347 0.0817 8.4948 51 1 -4.1610 1.6804 8.3738 52 1 -0.2401 0.4780 4.4797 53 1 -0.5744 2.2356 4.4505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494065459.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:26 Heat of formation + Delta-G solvation = -136.411860 kcal Electronic energy + Delta-G solvation = -30837.222654 eV Core-core repulsion = 26708.345133 eV Total energy + Delta-G solvation = -4128.877521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86674 -40.74305 -39.75341 -37.68559 -37.05351 -35.39097 -34.63569 -34.19345 -31.69459 -31.27583 -29.64144 -28.35312 -28.27530 -27.37737 -25.70199 -24.45200 -23.58185 -22.58590 -21.19739 -20.51925 -20.23056 -18.97445 -18.78825 -17.90817 -17.62834 -17.45422 -17.29534 -16.74411 -16.11309 -16.05629 -15.63986 -15.39520 -15.03183 -14.88712 -14.68800 -14.39810 -14.35721 -14.18316 -13.98533 -13.94430 -13.53578 -13.34243 -13.29710 -13.17283 -13.02475 -12.88610 -12.85660 -12.84176 -12.67983 -12.47013 -12.44202 -12.26697 -12.16790 -11.97390 -11.85293 -11.60020 -11.56602 -11.41589 -11.37864 -11.10136 -11.04144 -10.31092 -9.77618 -9.68441 -8.50547 -6.11139 1.07383 1.19848 1.32071 1.44611 1.73922 2.00882 2.18732 2.72407 2.89546 2.99543 3.53505 3.60827 3.77117 3.80060 3.82411 3.96273 4.00215 4.09260 4.24704 4.29374 4.31844 4.43779 4.46457 4.53074 4.56259 4.61735 4.62757 4.69826 4.73864 4.76400 4.77556 4.85403 4.87817 4.89430 4.93395 4.98520 5.02228 5.06514 5.11210 5.15111 5.26845 5.29378 5.33757 5.36772 5.39717 5.46772 5.49050 5.57612 6.06235 6.42400 6.59859 6.98430 7.25338 7.36081 7.93565 8.67105 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.002275 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.619516 B =12304.011389 C =12982.857576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.078 3.922 3 N -0.482 5.482 4 C -0.331 4.331 5 H 0.039 0.961 6 C 0.009 3.991 7 N -0.912 5.912 8 Si 0.948 3.052 9 H -0.241 1.241 10 H -0.290 1.290 11 H -0.255 1.255 12 C 0.456 3.544 13 O -0.618 6.618 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.086 4.086 17 H 0.104 0.896 18 C -0.122 4.122 19 C 0.106 3.894 20 N -0.607 5.607 21 C 0.659 3.341 22 O -0.594 6.594 23 O -0.365 6.365 24 C 0.123 3.877 25 C -0.179 4.179 26 C -0.134 4.134 27 C -0.180 4.180 28 C 0.124 3.876 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.279 0.721 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.060 0.940 52 H 0.078 0.922 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -8.477 29.909 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.044 4.044 3 N -0.204 5.204 4 C -0.459 4.459 5 H 0.057 0.943 6 C -0.193 4.193 7 N -0.550 5.550 8 Si 0.771 3.229 9 H -0.166 1.166 10 H -0.217 1.217 11 H -0.179 1.179 12 C 0.247 3.753 13 O -0.503 6.503 14 C -0.169 4.169 15 C -0.119 4.119 16 C -0.106 4.106 17 H 0.122 0.878 18 C -0.159 4.159 19 C -0.016 4.016 20 N -0.348 5.348 21 C 0.415 3.585 22 O -0.486 6.486 23 O -0.279 6.279 24 C 0.087 3.913 25 C -0.236 4.236 26 C -0.191 4.191 27 C -0.237 4.237 28 C 0.003 3.997 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.120 0.880 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.110 0.890 51 H 0.079 0.921 52 H 0.097 0.903 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.205 -8.195 29.593 32.057 hybrid contribution 0.335 0.006 -1.094 1.144 sum -8.870 -8.190 28.500 30.951 Atomic orbital electron populations 1.22098 0.94356 1.03220 1.01842 1.22058 0.96393 0.83261 1.02682 1.43987 1.57720 1.13215 1.05440 1.18601 1.38475 0.96450 0.92410 0.94288 1.26189 0.96601 1.02430 0.94090 1.69898 1.41381 1.42698 1.01052 0.85837 0.78543 0.79113 0.79421 1.16582 1.21692 1.17853 1.21498 0.80373 0.87203 0.86235 1.90515 1.51410 1.20818 1.87573 1.21779 1.04065 1.00360 0.90733 1.21136 1.02361 0.97146 0.91221 1.22327 0.93577 1.00174 0.94473 0.87821 1.22735 1.00048 0.99214 0.93936 1.22194 0.89169 0.95244 0.95009 1.47317 1.25722 1.52252 1.09488 1.17710 0.80780 0.78553 0.81455 1.90898 1.47834 1.47803 1.62046 1.86311 1.49744 1.70699 1.21183 1.22431 0.82140 0.91108 0.95594 1.22466 1.03530 0.94410 1.03223 1.21869 1.04235 1.03843 0.89144 1.22476 0.97262 1.01609 1.02382 1.22402 0.95879 1.02514 0.78916 0.88914 0.91572 0.94553 0.92146 0.88112 0.91184 0.87290 0.87971 0.92470 0.91316 0.87465 0.90191 0.90642 0.89971 0.91863 0.89093 0.92187 0.91249 0.87969 0.91073 0.92274 0.89033 0.92089 0.90317 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 10.11 71.98 0.73 -4.22 16 2 C 0.08 2.90 4.46 86.38 0.39 3.28 16 3 N -0.48 -23.17 2.18 -635.54 -1.39 -24.56 16 4 C -0.33 -19.72 9.35 84.04 0.79 -18.93 16 5 H 0.04 2.74 7.92 -2.91 -0.02 2.72 16 6 C 0.01 0.49 5.24 84.93 0.45 0.93 16 7 N -0.91 -55.16 13.96 21.66 0.30 -54.86 16 8 Si 0.95 42.02 25.12 68.60 1.72 43.75 16 9 H -0.24 -9.34 6.67 99.48 0.66 -8.67 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.46 20.62 7.57 87.65 0.66 21.28 16 13 O -0.62 -33.89 15.85 -3.07 -0.05 -33.94 16 14 C -0.13 -3.80 4.16 29.84 0.12 -3.68 16 15 C -0.08 -2.04 4.02 30.59 0.12 -1.92 16 16 C -0.09 -1.54 3.07 -9.40 -0.03 -1.57 16 17 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 18 C -0.12 -1.70 6.42 31.79 0.20 -1.50 16 19 C 0.11 1.59 6.90 86.73 0.60 2.19 16 20 N -0.61 -12.92 3.33 -942.08 -3.13 -16.06 16 21 C 0.66 16.50 7.93 129.79 1.03 17.53 16 22 O -0.59 -17.85 12.14 19.82 0.24 -17.61 16 23 O -0.36 -7.77 9.49 -55.40 -0.53 -8.29 16 24 C 0.12 2.05 1.13 -10.79 -0.01 2.04 16 25 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 26 C -0.13 -1.31 8.85 71.98 0.64 -0.68 16 27 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 28 C 0.12 2.60 5.56 86.86 0.48 3.09 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 1.88 6.38 -2.39 -0.02 1.87 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 2.40 3.72 -2.39 -0.01 2.39 16 33 H 0.10 2.89 6.74 -2.39 -0.02 2.87 16 34 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.11 2.63 7.42 -2.38 -0.02 2.61 16 36 H 0.10 2.62 5.66 -2.39 -0.01 2.60 16 37 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 38 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.19 8.04 -2.39 -0.02 1.17 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 1.73 7.96 -2.39 -0.02 1.71 16 53 H 0.07 1.50 8.01 -2.38 -0.02 1.48 16 Total: -1.00 -80.45 408.38 5.38 -75.08 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.84 Total: 23.47 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.37 Total: 13.01 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -4.22 Total: -95.47 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.33 Total: -59.84 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.72 Total: 43.75 kcal Total: -80.45 5.38 -75.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494065459.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.336 kcal (2) G-P(sol) polarization free energy of solvation -80.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds