Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.46942 * 2 1 4 4 C 1.42904 * 113.99972 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.52019 * 29.87156 * 4 3 2 6 6 C 1.53092 * 109.57140 * 269.71410 * 4 3 2 7 7 O 1.42895 * 109.41576 * 297.67029 * 6 4 3 8 8 C 1.42902 * 114.10026 * 298.84304 * 7 6 4 9 9 C 1.53089 * 109.41530 * 61.15991 * 8 7 6 10 10 C 1.53178 * 109.52338 * 149.99600 * 4 3 2 11 11 H 1.08999 * 109.54522 * 182.94031 * 10 4 3 12 12 N 1.46501 * 109.54543 * 303.12587 * 10 4 3 13 13 C 1.34773 * 119.99960 * 204.99877 * 12 10 4 14 14 O 1.21592 * 119.99974 * 5.07565 * 13 12 10 15 15 N 1.34781 * 120.00175 * 185.07131 * 13 12 10 16 16 C 1.46922 * 120.63092 * 174.96324 * 15 13 12 17 17 C 1.53193 * 108.77382 * 233.63195 * 16 15 13 18 18 C 1.53034 * 109.31198 * 305.36679 * 17 16 15 19 19 C 1.53003 * 109.45961 * 181.38790 * 18 17 16 20 20 C 1.50697 * 109.47175 * 174.97134 * 19 18 17 21 21 H 1.08002 * 120.00281 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99725 * 179.72435 * 20 19 18 23 23 N 1.31515 * 120.00262 * 0.27408 * 22 20 19 24 24 Si 1.86806 * 119.99802 * 180.27838 * 22 20 19 25 25 H 1.48497 * 109.47195 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47441 * 119.99854 * 24 22 20 27 27 H 1.48500 * 109.47026 * 239.99984 * 24 22 20 28 28 C 1.53032 * 109.52883 * 61.37163 * 18 17 16 29 29 C 1.46923 * 120.62776 * 354.98620 * 15 13 12 30 30 H 1.09004 * 109.47611 * 299.99661 * 1 2 3 31 31 H 1.08995 * 109.47652 * 60.00351 * 1 2 3 32 32 H 1.09005 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47463 * 239.99600 * 2 1 3 34 34 H 1.09000 * 109.47286 * 119.99404 * 2 1 3 35 35 H 1.08998 * 109.48167 * 57.66016 * 6 4 3 36 36 H 1.09002 * 109.47405 * 177.68666 * 6 4 3 37 37 H 1.09004 * 109.48506 * 181.13912 * 8 7 6 38 38 H 1.09000 * 109.48208 * 301.16347 * 8 7 6 39 39 H 1.09000 * 109.53062 * 182.48780 * 9 8 7 40 40 H 1.09003 * 109.52721 * 62.29455 * 9 8 7 41 41 H 0.96998 * 119.99723 * 24.99513 * 12 10 4 42 42 H 1.09004 * 109.58574 * 113.84637 * 16 15 13 43 43 H 1.09001 * 109.58478 * 353.42104 * 16 15 13 44 44 H 1.09001 * 109.49668 * 185.41378 * 17 16 15 45 45 H 1.08999 * 109.52419 * 65.33759 * 17 16 15 46 46 H 1.09001 * 109.45977 * 301.35345 * 18 17 16 47 47 H 1.08999 * 109.47288 * 54.97006 * 19 18 17 48 48 H 1.08999 * 109.46854 * 294.97044 * 19 18 17 49 49 H 0.97002 * 119.99973 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.49850 * 58.58095 * 28 18 17 51 51 H 1.09002 * 109.49871 * 178.67234 * 28 18 17 52 52 H 1.08998 * 109.58579 * 246.15615 * 29 15 13 53 53 H 1.09007 * 109.58879 * 6.43825 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8640 0.6009 -0.5126 6 6 3.9421 1.5076 1.4417 7 8 3.4186 2.6666 2.0933 8 6 3.8093 3.9017 1.4901 9 6 3.2927 3.9505 0.0498 10 6 3.8421 2.7470 -0.7225 11 1 4.9294 2.8075 -0.7690 12 7 3.2927 2.7441 -2.0806 13 6 3.8904 3.4638 -3.0508 14 8 4.9361 4.0410 -2.8231 15 7 3.3290 3.5437 -4.2736 16 6 3.9083 4.4114 -5.3080 17 6 2.8150 5.3446 -5.8377 18 6 1.6234 4.5099 -6.3125 19 6 0.5434 5.4366 -6.8742 20 6 -0.5757 4.6104 -7.4539 21 1 -0.5222 3.5321 -7.4242 22 6 -1.6708 5.2311 -8.0166 23 7 -1.7362 6.5441 -8.0522 24 14 -3.0616 4.2069 -8.7281 25 1 -2.7477 2.7647 -8.5654 26 1 -4.3246 4.5227 -8.0138 27 1 -3.2179 4.5192 -10.1715 28 6 1.0527 3.7169 -5.1346 29 6 2.1259 2.7650 -4.5972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.6157 0.6134 1.9726 36 1 5.0312 1.5523 1.4398 37 1 3.3873 4.7323 2.0559 38 1 4.8967 3.9779 1.4891 39 1 3.6271 4.8723 -0.4263 40 1 2.2032 3.9153 0.0522 41 1 2.4989 2.2242 -2.2815 42 1 4.2939 3.8001 -6.1239 43 1 4.7168 5.0028 -4.8781 44 1 3.2065 5.9271 -6.6717 45 1 2.4940 6.0178 -5.0428 46 1 1.9504 3.8199 -7.0904 47 1 0.9733 6.0645 -7.6546 48 1 0.1534 6.0666 -6.0747 49 1 -2.5068 6.9808 -8.4478 50 1 0.7485 4.4051 -4.3460 51 1 0.1896 3.1407 -5.4681 52 1 2.3661 2.0194 -5.3551 53 1 1.7597 2.2679 -3.6988 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571637878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -153.483559 kcal Electronic energy + Delta-G solvation = -31506.835776 eV Core-core repulsion = 27377.217970 eV Total energy + Delta-G solvation = -4129.617805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74520 -40.62369 -38.81604 -38.17260 -36.11505 -35.69551 -34.07090 -32.75653 -32.30372 -31.67013 -30.60732 -29.69613 -26.61778 -25.47169 -24.53435 -24.18967 -23.71031 -23.31021 -21.52949 -21.32696 -20.44737 -19.21101 -18.39915 -17.91290 -17.70370 -17.21586 -16.77536 -16.61776 -16.51564 -16.30687 -15.75707 -15.45803 -15.38215 -15.14576 -15.02679 -14.68072 -14.54476 -14.38840 -14.10594 -13.94583 -13.86909 -13.43363 -13.30649 -13.05384 -12.98244 -12.74480 -12.72986 -12.52451 -12.37853 -12.30317 -12.18208 -12.13616 -11.81781 -11.73356 -11.66578 -11.41423 -11.25157 -11.01100 -10.97431 -10.83542 -10.52314 -10.20248 -10.16484 -9.46126 -8.15643 -6.25173 1.41511 1.42315 1.54539 1.59466 2.10914 2.43331 2.56534 2.81145 3.04955 3.18332 3.53656 3.75186 3.81315 3.90224 4.00611 4.08090 4.09054 4.19806 4.21241 4.23297 4.31304 4.39549 4.41261 4.48006 4.52115 4.53560 4.56016 4.67210 4.71384 4.79444 4.81699 4.89705 4.89940 4.95152 4.97815 5.08131 5.08999 5.19044 5.31139 5.32818 5.32892 5.38560 5.48834 5.55476 5.60044 5.82056 5.90326 5.96925 6.10752 6.29849 6.36047 6.91882 6.92547 7.43703 7.51286 8.96608 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002760 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.861871 B =10142.877085 C =11431.696404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.387 6.387 4 C 0.054 3.946 5 H 0.095 0.905 6 C 0.041 3.959 7 O -0.389 6.389 8 C 0.068 3.932 9 C -0.159 4.159 10 C 0.166 3.834 11 H 0.095 0.905 12 N -0.729 5.729 13 C 0.705 3.295 14 O -0.631 6.631 15 N -0.625 5.625 16 C 0.138 3.862 17 C -0.122 4.122 18 C -0.071 4.071 19 C 0.032 3.968 20 C -0.524 4.524 21 H 0.068 0.932 22 C -0.005 4.005 23 N -0.938 5.938 24 Si 0.960 3.040 25 H -0.256 1.256 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.111 4.111 29 C 0.120 3.880 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.065 0.935 47 H -0.014 1.014 48 H -0.018 1.018 49 H 0.260 0.740 50 H 0.040 0.960 51 H 0.076 0.924 52 H 0.086 0.914 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.602 -16.330 18.976 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.307 6.307 4 C -0.005 4.005 5 H 0.113 0.887 6 C -0.036 4.036 7 O -0.307 6.307 8 C -0.010 4.010 9 C -0.198 4.198 10 C 0.061 3.939 11 H 0.113 0.887 12 N -0.386 5.386 13 C 0.407 3.593 14 O -0.513 6.513 15 N -0.361 5.361 16 C 0.015 3.985 17 C -0.161 4.161 18 C -0.090 4.090 19 C -0.005 4.005 20 C -0.562 4.562 21 H 0.087 0.913 22 C -0.202 4.202 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.179 1.179 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.150 4.150 29 C -0.003 4.003 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.245 0.755 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.005 0.995 48 H 0.000 1.000 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.094 0.906 52 H 0.104 0.896 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.992 -15.650 19.246 27.553 hybrid contribution -1.225 0.101 -1.072 1.631 sum 10.767 -15.549 18.174 26.230 Atomic orbital electron populations 1.21753 0.93652 1.03101 1.02392 1.22713 0.95800 0.82907 1.01116 1.88003 1.19792 1.27832 1.95044 1.23066 0.83017 0.97499 0.96937 0.88735 1.23230 0.98991 0.89674 0.91721 1.87942 1.74635 1.14229 1.53903 1.22595 0.99539 0.86989 0.91840 1.22478 1.01885 0.98463 0.96946 1.20986 0.98613 0.94550 0.79792 0.88745 1.45172 1.32833 1.52224 1.08362 1.15975 0.82951 0.79719 0.80663 1.90844 1.25057 1.53264 1.82169 1.47373 1.29901 1.47503 1.11301 1.21436 0.95217 0.92194 0.89615 1.21933 0.96014 0.97910 1.00205 1.21014 0.94335 0.96933 0.96700 1.19023 0.93358 0.94272 0.93827 1.21699 1.03771 0.93733 1.36988 0.91342 1.25985 1.01429 0.95931 0.96850 1.70125 1.31054 1.09955 1.46816 0.85463 0.78702 0.79559 0.77728 1.17912 1.20931 1.20936 1.21759 0.98015 0.98190 0.97015 1.21774 0.83861 0.93348 1.01284 0.92759 0.92730 0.89378 0.92177 0.92067 0.86802 0.90232 0.87842 0.91722 0.92223 0.91548 0.75472 0.90089 0.90134 0.90852 0.93898 0.91622 0.99542 0.99972 0.93101 0.94065 0.90572 0.89561 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.62 6.47 71.98 0.47 1.09 16 3 O -0.39 -6.81 8.79 -141.93 -1.25 -8.06 16 4 C 0.05 0.80 2.59 30.68 0.08 0.88 16 5 H 0.09 1.05 7.79 -2.39 -0.02 1.03 16 6 C 0.04 0.54 6.49 72.01 0.47 1.01 16 7 O -0.39 -7.41 10.70 -141.93 -1.52 -8.93 16 8 C 0.07 1.20 6.84 72.01 0.49 1.69 16 9 C -0.16 -3.49 5.56 30.69 0.17 -3.32 16 10 C 0.17 3.38 2.37 45.11 0.11 3.49 16 11 H 0.09 2.04 7.51 -2.39 -0.02 2.03 16 12 N -0.73 -16.88 4.96 -457.22 -2.27 -19.15 16 13 C 0.71 20.94 8.27 179.05 1.48 22.42 16 14 O -0.63 -22.71 15.41 -4.00 -0.06 -22.78 16 15 N -0.62 -17.75 2.97 -836.90 -2.49 -20.24 16 16 C 0.14 4.05 6.42 86.36 0.55 4.61 16 17 C -0.12 -4.18 5.36 30.67 0.16 -4.01 16 18 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 19 C 0.03 1.66 4.45 29.85 0.13 1.79 16 20 C -0.52 -28.44 8.39 25.60 0.21 -28.23 16 21 H 0.07 3.48 7.06 -2.91 -0.02 3.45 16 22 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 23 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 24 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 C -0.11 -3.75 5.19 30.67 0.16 -3.59 16 29 C 0.12 3.01 6.43 86.36 0.56 3.56 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.06 0.58 7.86 -2.39 -0.02 0.56 16 35 H 0.11 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.67 7.83 -2.39 -0.02 1.65 16 41 H 0.41 8.35 5.55 -92.71 -0.51 7.83 16 42 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.08 2.49 7.03 -2.39 -0.02 2.47 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 50 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.08 2.68 6.91 -2.39 -0.02 2.67 16 52 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 53 H 0.09 1.86 5.56 -2.38 -0.01 1.84 16 Total: -1.00 -71.64 409.14 1.32 -70.32 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.36 Total: 22.74 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.22 Total: -2.43 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -4.47 Total: -96.28 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -2.83 Total: -39.76 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.64 1.32 -70.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571637878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.160 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds